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Vocabulary - 2
principles of Biology
42
Biology
Undergraduate 1
09/29/2009

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Term
ion
Definition
an atomic arrangement that has an unequal number of protons and electrons, hence as a whole bears a charge.
Term
electron affinity
Definition
the pulling force that an atom has on another atom's electrons.
Term
polar
Definition
an arrangement where an equal number of opposite charges is distributed unequally, which results in one region of the arrangement being positively charged and a counterbalancing region being negatively charged. (separation of charge)
Term
chemical reaction
Definition
when the arrangement of atoms within molecules emerging from a collision is different than the arrangement entering the collision.
Term
activation energy
Definition
the speed with which certain molecules must collide before they can undergo a chemical reaction.
Term
reduction
Definition
an increase in the number of electrons in close association with an atom. (OIL RIG)
Term
monomer
Definition
the generic name given to small molecules that can be linked together to form large molecules (macromolecules)
Term
polymer
Definition
the generic name given to any molecule formed by linking together many small molecules (linking together many monomers).
Term
primary structure (of a protein)
Definition
a protein's specific sequence of linked amino acids.
Term
tertiary structure (of a protein)
Definition
the aspect of a protein's three-dimensional shape determined by interactions among the variable groups in the same chain with each other and with the surrounding water medium.
Term
enzyme
Definition
any protein that acts as a catalyst for some specific chemical reaction.
Term
permease
Definition
any protein that aids in the movement of a specific type of molecule across a cell membrane.
Term
DNA polymerase
Definition
the enzyme that, in association with an existing single-sided DNA molecule being used as a template to position different deoxyribonucleotides, catalyzes the linking of one deoxyribonucleotide to another (forming DNA)
Term
RNA polymerase
Definition
the enzyme that, in association with DNA being used as a template to position different ribonucleotides, catalyzes the linking of one ribonucleotide to another (forming RNA).
Term
gene
Definition
any segment of a DNA molecule that is transcribed
Term
promoter
Definition
a segment of a two-sided DNA molecule that due to its sequence has the right shape for RNA polymerase to bind to and then initiate transcription. They designate the start of genes.
Term
protein gene
Definition
any segment of DNA that codes for a functional protein (is a protein recipe)
Term
mRNA (messenger RNA)
Definition
the generic name given to the RNA molecule that results from the transcription of a protein gene. (the working copy of the protein recipe)
Term
genetic regulation
Definition
the turning on or off of transcription of any gene within a genome. (The "choosing" of which gene to transcribe)
Term
regulatory protein
Definition
the generic name given to any protein that can bind to DNA (at a regulatory sequence) and influence (either positively or negatively) RNA polymerase's ability to bind to a gene's promoter (and subsequently initiate transcription).
Term
tRNA
Definition
RNA molecules (made up of around 70-90 ribonucleotides) that play the role of translators during RNA translation. Can be loaded with only one type of amino acid and has a unique anticodon.
Term
point mutation
Definition
a change in a cell's DNA sequence due to the substitution of one deoxyribonucleotide with another deoxyribonucleotide having a different nitrogenous base.
Term
deletion mutation
Definition
a change in a cell's DNA sequence due to the loss of one or more of the deoxyribonucleotides
Term
polyunsaturated fatty acid
Definition
any of a group of molecules that consists of an acid (carboxyl) group attached to a long hydrocarbon chain, in which not all of the carbons are covalently bonded to as many hydrogens as possible.
Term
concentration gradient
Definition
a change in concentration across distance (in biology, the term is used mostly to discuss a change in concentration across a membrane)
Term
simple diffusion
Definition
net directional movement of some type of molecule across a membrane, where the movement is powered by the presence of a concentration gradient (movement from high to low), and the molecules cross simply because the membrane is permeable to this type of molecule.
Term
facilitated diffusion
Definition
net directional movement of some type of molecule across a membrane, where the movement is powered by the presence of a concentration gradient (movement from high to low), and the molecules cross the membrane with the aid of a channel protein or a permease.
Term
active transport
Definition
net directional movement of some type of molecule across a membrane, where the movement goes against a concentration gradient so the movement is powered by some usable energy source supplied by the cell, and the molecules cross the membrane with the aid of a permease.
Term
osmosis
Definition
the diffusion of solvent molecules (water molecules) toward regions of higher osmotic concentration (hence regions of lower water concentration)
Term
metabolic pathway
Definition
a step-wise series of chemical reactions (outputs of one become inputs to the next), where each reaction is facilitated by a different enzyme.
Term
biosynthesis
Definition
the use of metabolic pathways to rearrange atoms in molecules available to the cell into biologically useful molecules.
Term
nitrogen fixation
Definition
the process where molecular nitrogen (N2) is reduced to form ammonia (NH3)
Term
autotroph
Definition
a cell able to reduce carbon dioxide (CO2) to a three-carbon sugar (called glyceraldehyde) (can perform the Calvin cycle)
Term
heterotroph
Definition
a cell unable to reduce carbon dioxide (CO2) to a three-carbon sugar, thus, must get their needed supply of simple sugars from autotrophic cells (via barter or theft)
Term
essential nutrient
Definition
any nutrient that must be included in an organism's diet if normal function is to continue
Term
allosteric modulation
Definition
whenever a protein's function (whether it is turned on or off) is controlled by ligand-induced shape changes
Term
energy metabolism
Definition
how cells use an external usable energy source, such as light or a high energy molecule, to make the two needed cellular fuels - ATP and NADPH
Term
higher redox potential
Definition
a molecule (base-group) that in comparison to another molecule does not hold onto certain electrons (or hydrogen atoms) as tightly, so (during a chemical reaction) more readily donates electrons (to this other molecule) than accepts electrons (from this other molecule)
Term
higher phosphorylation potential
Definition
a molecule (base-group) that in comparison to another molecule does not hold onto certain phosphates so tightly, so (during a chemical reaction) more readily donates a phosphate (to this other molecule) than accepts a phosphate (from this other molecule)
Term
NADPH
Definition
the reduced form of NADP+ (NAD+ with an extra phosphate). Used as a hydrogen donor whenever hydrogens are added on to other molecules during biosynthesis.
Term
ATP
Definition
a molecule (an activated ribonucleotide) with both a phosphate to transfer and relatively high phosphorylation potential.
Term
NADH
Definition
the reduced form of NAD+. Used as an initial donor in respiring cells.
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