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Various Midterm Questions
practice midterms
92
Biology
Undergraduate 1
03/08/2011

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Term

Which of the following does not form part of the thin filaments of a muscle cell?

Actin

Troponin

Tropomyosin

Myosin

Calcium-binding site

Definition
myosin, it is in the thick filaments
Term

Put the following in order

a) polyadenylation

b) tRNA alignment with mRNA

c) RNA polymerase

d) Ribosome movement to the next codon

E) amino acid chain elongation

Definition

C RNA polymerase comes first

A

B

D

E

Term
If one strand of DNA has the sequence 5'-ATTGCA-3' what would the other strand's sequence be?
Definition
3'-TAACGT-5'
Term
What composes a nucleotide?
Definition
a nitrogen base, a phosphate group and a five-carbon sugar
Term
What is the primer is required to initiate the synthesis of a new DNA strand?
Definition
an enzyme called primase
Term
RNA polymerase attaches to sites on DNA called ____.
Definition
promoters
Term
Which bands are dark and which bands are light?
Definition

A-bands are dArk

I-bands are lIght

Term
how many codons are there in the genetic code?
Definition
64
Term
What three things have to happen to RNA transcripts before they leave the nucleus?
Definition

1) addition of methionine (AUG codon)- to start the sequence

2) polyadenylation -- the addition of poly-A tail-stop sequence

3) removal of introns - junk DNA- by spliceosomes 

Term
The enzyme responsible for DNA synthesis in both replication and repair is called ___.
Definition
DNA polymerase III
Term
During DNA replication which enzyme joins Okazaki fragments together?
Definition
DNA ligase
Term
The primary level of DNA packaging is often referred to as the "beadsonastring" structure, which consists of the DNA being wrapped around 7 basic proteins known as ____, in a structure called the _____.
Definition
histones, nucleosome
Term
The region at the end of the chromosome that tends to get shorter with each successive round of cell division is called the _____.
Definition
telomere
Term
The outer nuclear membrane is continuous with the membrane of the ____ ____. In some places the inner and outer nuclear membranes are joined together creating nuclear ____, which allow the movement of large molecules across the nuclear envelope.
Definition
endoplasmic reticulum, pores
Term
Genes contain regions of non-coding DNA called ____, which are removed from RNA transcripts by the _____.
Definition
introns, spliceosomes
Term
The start codon is always ___, which codes for the amino acid ____.
Definition
methionine
Term
During DNA replication, the two strands of the double helix are forced apart by the enzyme____
Definition
helicase
Term
A sample of normal double-stranded DNA was found to have a guanine content of 18%. What is the expected proportion of adenine?
Definition

32%

 

A=T

C=G

A%+T%+C%+G% =100% 

so adenine and guanine would only make up 50%

Term
If cytosine makes up 38% of the nucleotides in a sample of DNA, what percent of the nucleotides in this sample will be thymine?
Definition
12%
Term
What would happen to a eukaryotic cell lacking telomerase?
Definition
it would be unable to replicate
Term
What nitrogen bases are purines? What ones are pyrimadines?
Definition

purines - adenine and guanine (wider)

pyrimadines - cytosine and thymine (narrower)

Term
What makes up a nucleotide?
Definition
Nitrogen base, a phosphate group and a 5-carbon sugar
Term
What is the structural difference between RNA and DNA?
Definition
DNA has a deoxyribose sugar and RNA has a ribose sugar
Term
In striated muscle, myosin is an _____-stimulated ATPase.
Definition
actin
Term
The protein, ____ is found between adjacent doublets in the eukaryotic cilium, and is involved in ciliary movement
Definition
nexin
Term
The interaction of ____ and ____ in striated muscle cells is controlled by the protein troponin.
Definition

myosin and the actin filament.

 

When the muscle cell is stimulated to contract by an action potential, calcium channelsopen in the myoplasmic membrane and release calcium into the myoplasm. Some of this calcium attaches to troponin which causes it to change shape, exposing binding sites for myosin (active sites) on the actin filaments

Term
The primary level of DNA packaging involves the double helix being wrapped around a collection of small, basic proteins called, ____, to create a structure called the____.
Definition
histones, nucleosomes
Term
Axonemes are found in ____ and are composed of parallel _____ in a 9+2 arrangement. At the base of the axoneme is the ___ ___, which differs from the axoneme by having no ___ ____. 
Definition

cilium or flagellum, 

microtubules

basal body

I DONT KNOW maybe dynein heads....

 

[image]

Term
During contraction of skeletal muscle, the ____ band shortens.
Definition
The I band, because the Z bands are pulled together
Term
What joins together Okazaki fragments?
Definition
DNA ligase
Term
What synthesizes/elongates DNA?
Definition
DNA polymerase
Term
What separates the DNA strands from each other?
Definition
helicase
Term
What removes the primer?
Definition
DNA polymerase
Term
what enzyme makes the primer sequence?
Definition
Primase
Term
What keeps there strands of DNA apart?
Definition
single-stranded binding proteins
Term
State 3 differences between Cardiac and skeletal muscle.
Definition

Cardiac

-have 1 nucleus per cell

-they are branched

-have no intercalated discs

 

Skeletal

-are multinucleated 

-1 fibre... not branched

-has intercalated discs

Term
What is the role of calcium in skeletal muscle contraction?
Definition
to bind with troponin, causing the actin filament to be exposed
Term
Centrioles and basal bodies are examples of ____ ____ of the cytoskeleton.
Definition
organizing centers
Term
The accessory proteins ____ and _____ are associated with the Z-line in striated muscle cells.
Definition
desmin and alpha-actinin 
Term
In skeletal muscle, where are calcium ions stored?
Definition
in the sarcoplasmic reticulum
Term
The cytoskeleton is organized from a region near the ____ called the ____
Definition
nucleus, centrosome
Term
intermediate cytoskeletal filaments are made up of ____ proteins, whereas actin and microtubules are made of _____ proteins.
Definition
fibrous, globular
Term
The thin filaments in skeletal muscle are stiffened by the protein _____.
Definition
tropomyosin
Term
Thick filaments are made mostly of the protein ____, whereas the thin filaments are mostly____. 
Definition
myosin, actin
Term
In smooth muscle, myosin must be ____ before it can interact with actin. This is accomplished by the enzyme myosin ___-___ _____, which itself needs to be activated, this time by the protein ______ which is bound to ____ ions. 
Definition
activated, myosin light-chain kinase (MLCK), calmodulin, Ca++
Term
What is the role of calcium in skeletal muscle contraction?
Definition
to bind with troponin, causing the actin filament to be exposed
Term
Centrioles and basal bodies are examples of ____ ____ of the cytoskeleton.
Definition
organizing centers
Term
The accessory proteins ____ and ____ are associated with the Z-line in striated muscle cells. 
Definition
actinin and desmin
Term
In skeletal muscle, Calcium ions are store in the ____ ____
Definition
sarcoplasmic reticulum 
Term
The cytoskeleton is organized from a region near the ____ called the ____.
Definition
nucleus, centrosome
Term
The thin filaments in skeletal muscle are stiffened by the protein ____.
Definition
tropomyosin
Term
intermediate cytoskeletal filaments are made up of _____ proteins, whereas actin and microtubules are made of ____ proteins.
Definition
filamentous, globular
Term
Thick filaments in myofibrils are composed mainly of the protein _____, whereas the thin filaments are mostly ____.
Definition
myosin, actin.
Term

1. Neurotransmitters are released from presynaptic axon terminals into the synaptic cleft by which mechanism?

 

Definition
exocytosis
Term
The 5' end has a ____ group.
Definition
phosphate
Term
Synthesis of a new DNA strand usually begins with ____.
Definition
an RNA primer
Term
DNA replication is what type of conservative?
Definition
semiconservative 
Term
In a nucleosome, DNA is wrapped around___.
Definition
histone proteins
Term
What are the purines?
Definition
adenine and guanine
Term
where are neurotransmitter receptors located?
Definition
on the postsynaptic membrane
Term
severing of the axon of a neuron would most probably cause what?
Definition
it would stop the neuron from sending information 
Term

-Each deoxyribonucleic acid molecule is composed of a long chain of _____.

- Genes are composed of ______.

-DNA is composed of chemical building blocks called _______.

Definition

nucleotides.

deoxyribonucleic acid

nucleotides. 

 

Term
What makes up the thin filaments of a muscle cell?
Definition
actin, toponin, tropomyosin, calcium-binding site
Term
What is the correct sequence that occurs during the excitation and contraction of a muscle cell?
Definition

1) An action potential in a motor neuron causes the axon to release acetylcholine.

2) Transverse tubules depolarize the sarcoplasmic reticulum.

3) Calcium is released and binds to the troponin complex.

4) Tropomyosin shifts and unblocks the cross-bridge binding sites

5) The thin filaments are ratcheted across the thick filaments by the heads of the myosin molecules using energy from ATP.

 

Term
What proteins and structures are directly associated with movement in cells or by cells?
Definition

cilia, dynein, actin, flagella

NOT CENTROSOMES

Term
Which cell type interacts with both the humoral and cell-mediated immune pathways?
Definition
Term

Antibodies are _____ proteins.

The structure of antibodies has a ____ region and a ____ region.

Antibodies act as signals to _____.

_____ _____ are responsible for the production of anitbodies.

Definition

immunoglobulin 

constant, variable

phagocytes

Plasma cells

 

Term
In inflammatory response, what prevents dilation of arterioles, increased permeability of blood vessels, increased population of phagocytes in the area and leakage of plasma to the affected area?
Definition
release of histamine
Term

 

Which of the following is a false statement about innate immunity?

 

 

 A)They include inflammatory responses.

 B)They include physical and chemical barriers.

C) They must be primed by the presence of antigen.

D)They may involve the formation of membrane attack complexes.

E)Macrophages and natural killer cells are participants in the process.

Definition

C) They must be primed by the presence of antigen

E)Macrophages and natural killer cells are participants in the process.

Term
What proteins are in both skeletal, cardiac and smooth muscle?
Definition
actin and myosin
Term
What band shrinks when a skeletal muscle fiber contracts?
Definition
I bands shrink
Term
What are four functions of the cytoskeleton?
Definition

-to provide mechanical support to the cell

-To maintain the characteristic shape of the cell

-to hold mitochondria and other organelles in place within the cytosol

-To assist in cell motility by interacting with specialized motor proteins

Term
Name 4 parts of the cytoskeleton.
Definition

microtubules, microfilaments, intermediate filaments and actin. 

 

NOT the nuclear membrane

Term
___ and ____ are present on the surface of T cells where they enhance B cell activity.
Definition
CD4 and CD8
Term

Which of the following are distinct from the others in terms of composition?

Microtubules

Microfibrils

Intermediate filaments

nuclear lamina 

Definition

microfibrils

 

the others are stuff that build up cytoskeleton and nuclear lamina is a class of intermediate filament

Term
Ions can travel directly from the cytoplasm of one animal cell to the cytoplasm of an adjacent cell through ___ ____.
Definition
GAP JUNCTIONS WOOOO
Term
Which action is affected by an antihistamine?
Definition
blood vessel dilation
Term
What are antigens?
Definition
foreign molecules that trigger the generation of antibodies
Term
The inner and outer nuclear membranes are joined at openings called ___ ____. 
Definition
nuclear pores
Term
What are 3 types of damage  that could be caused by exposure to various chemicals, X-rays or UV light.
Definition

depurination

deamination

thymidine cross linking

Term
Protein involved in the cytoskeleton
Definition
actin
Term
Antigen-presenting protein on the surface of macrophages
Definition
MHC II
Term
cell involved in cell-mediated arm of the immune system
Definition
T lymphocyte 
Term
antibody involved in secondary immune response
Definition
IgG
Term
region of an antigen that binds to an antibody
Definition
epitope
Term
antibody involved in primary immune response
Definition
IgM
Term
Cell involved in the humoral arm of the immune system
Definition
B lymphocyte
Term
Antigen-presenting protein on the surface of most cell types
Definition
MHC-I
Term
The triple-stranded protein _____ is a major component of the extra-cellular matrix.
Definition
collagen
Term
DNA replication occurs at many places simultaneously along the chromosome. These are referred to as origins of replication, where the two strands are pulled apart to create replication____, which each have two replication _____, each moving in opposite directions.
Definition
Term
In the nucleus, DNA is organized into densely-packed regions termed _____, where little expression can occur, and less densely-packed regions, termed ____, where expression can occur. 
Definition
heterochromatin, euchromatin
Term
Give two examples of neurotransmitters
Definition
Dopamine, acetylcholine, serotonin 
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