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Unity of Life
Biology - Unity of Life
307
Biology
Undergraduate 1
11/22/2009

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Cards

Term
Energy
Definition
The capacity to do work
Term
3 forms of energy
Definition

1. Potential

2. Kinetic

3. Chemical

Term
Potential Energy
Definition

Capacity to cause change because of where an object is located or how its parts are arranged.

Example: chemical bonds hold atoms in certain arrangements

Term
Kinetic Energy
Definition

Energy of motion

Example: muscles that help you bounce

Each conversion, a bit of energy is converted to thermal energy (heat)

Term
Chemical Energy
Definition
Energy stored in the bones
Term
1st law of thermodynamics
Definition

*total amount of energy in the universe remains constant

 

* Energy can undergo conversions from one form to another, but it cannot be created or destroyed

Term

2nd law of thermodynamics

Definition

*No energy conversion is ever 100% efficient

 

*The total amount of energy is flowing from high-energy forms to forms lower in energy

 

*Whenever energy is transformed to another form, some is converted to heat

Term

ATP

(Adenosine Triphosphate)

Definition

*Main energy carriers on cells

 

 

*nitrogenous base, sugar (ribose) & 3 phosphate groups

 

* Endergonic reaction - cell "spends"

* Exergonic reaction - cell "earns"

Term

ADP

(Adenosine diphosphate)

Definition

*formed when ATP gives up phosphate group

 

*nitrogenous base, sugar (ribose) & 2 phosphate groups

Term

AMP

(Adenosine Monophosphate)

Definition

*found in RNA

 

*Nitrogenous base, sugar (ribose) and one phosphate group

Term
Endergonic reaction
Definition

*energy in (energy input required)

 

*cells "spend" ATP (ATP delivers energy to this reaction)

 

*cells store energy by way of this reaction

 

*non-spontaneous process that takes place with outside intervention - low energy to high energy

Term
Exergonic Reaction
Definition

*Energy out (energy released)

 

*Cells "earn" ATP (ATP accepts energy released by this reaction)

 

*Ends with net release of energy

 

*Spontaneous process that takes place with NO outside intervention - high energy to low energy

Term
Chemical Equilibrium
Definition
the rate of opposing reactions is equal
Term
Metabolism
Definition
All the enzyme-mediated chemical reactions by which cells acquire and use energy as they construct, remodel & breakdown organic molecules
Term
Metabolic Pathway
Definition
enzyme-mediated sequences of reactions in cells
Term

1) Biosynthetic (anabolic) - endergonic

Example: photosynthesis

 

2) Degradative (catabolic) - exergonic

Example: aerobic respiration

Definition
Types of metabolic pathways
Term

Anabolic pathway

(Biosynthetic)

Definition

*Endergonic -- photosynthesis

 

*synthesis of larger molecules from smaller ones

From small organic molecules

to

Molecules of life

 

*reductive process that requires energy

Term

Catabolic Pathway

(Degradative)

Definition

*exergonic -- aerobic respiration

 

*breakdown of larger molecules into smaller ones

From nutrients (carbs, fats, proteins)

to

breakdown products (CO2 and H2O)

 

*An oxidative process that releases energy

Term
Amphibolic Pathway
Definition
pathways that serve both catabolism and anabolism
Term
Activation Energy
Definition

*minimum amount of energy that will get chemical reaction going

 

*enzymes make energy barriers smaller

Term
Transition State
Definition

*"dynamic bottleneck" or critical point of no return where potentially reacting species convert to products or return to reactants

 

*Stable reactants must surmount a free-energy barrier to be converted to a product

 

*This is the barrier

Term
Active Site
Definition

*pockets or crevices where substrates bind & where reactions proceed

 

*All or part of substrate "fits" this

 

*Complementary in shape, size, polarity & charge

Term
Catalase
Definition
Antioxidant that helps neutralize free radicals
Term
How Catalase Works
Definition

-hydrogen peroxide enters cavity in catalase (iron molecule)

-A hydrogen is attached to amino acid histidine & oxygen binds to iron

-this binding destabilizes peroxide bonds, which breaks

-H2O forms

-later reaction, another hydrogen peroxide will pull oxygen from iron & then catalase can work again

Term
Cofactor
Definition

Atoms or molecules other than proteins that associate with enzymes and are necessary for their function

 

Metal ions - copper, iron, zinc, calcium & magnesium

 

Cosubstrates - are only transiently associated with enzyme NAD+ and NADP+

 

Prosthetic groups - are permanently associated with the enzyme

Term
Coenzymes
Definition

organic cofactors

NAD, NADP & FAD

 

Accepts electrons & hydrogen ions

Transfers them within cell

 

Derived from vitamins

Term

pH

Salinity

Temperature

Hormones

Coenzymes & Cofactors

Allosteric regulators

Definition
Enzymatic reactions are control by:
Term
Concentration Gradient
Definition

Difference in number per unit volume of molecules (or ions) of a substance between two adjacent regions

 

In the absence of other forces, a substance moves from a region where it is more concentrated to one where its less concentrated

 

"down" the gradient

 

Term

Steeper concentration gradient

 higher temperatures

 size of molecule diffusing

 Electrical or pressure gradients

Definition
What affects the rate of diffusion through a semipermable membrane?
Term
Allosteric Activation
Definition
If substrate different shape than active site - will go into vacate binding site and change shape to match substrate
Term
Allosteric Inhibition
Definition
If substrate matches active site but needs to turn off -- it will go into vacant binding site and change active site so doesn't match substrate
Term
Feedback Inhibition
Definition

Control mechanism

 

an activity causes a condition to change, then the change itself stops the activity

 

A cellular change, caused by a specific activity, shuts down the activity that brought it about

Term
Secondary (2nd Level) Structure
Definition

Structure Level

 

Coiling/folding of amino acid chain (polypeptide)

Term
Homologous Chromosomes
Definition
2 chromosomes (pair) that are the same size and shape
Term
Germ Cells
Definition
Specialized cells in ovaries & testes of animals
Term
Hot Spot
Definition
Region in proto-oncogene where mutation most likely to occur
Term
Oncogene
Definition

name of mutated proto-oncogene

 

P53 oncogene inhibits production of normal tumor suppressor protein

 

Result = unregulated cell growth not halted & results in cancerous growth

 

Activates cell division

Term
Proto-oncogene
Definition

means it codes for a protein that regulates cell growth

 

Specifically it codes for a tumor suppressor protein which protects from tumor growth

Term
Micropipetter
Definition
Delicate instrument which allows you to measure precise volumes of liquids & transfer those liquids from one container to another
Term
Family Pedigree
Definition
Tool to use in order to track the occurence of genes & their expression from one generation to another
Term

1. DNA cannot leave the nucleus

 

2. Ribosomes are located outside the nucleus

Definition
2 reasons why eukaroytic cells make proteins using mRNA rather than making proteins directly from DNA
Term
Quaternary (4th Level) Structure
Definition

Structure Level

 

2 or more polypeptide chains (amino acids chains) form protein

Term
Li-Fraumeni Syndrome
Definition

Result from mutation of gene P53 on Chromosome 17

 

Mutated gene leads to a predisposition toward certain types of cancers

 

Example of proto-oncogene

Term
They twist the shape, negative & positive charges attract & bend to bond
Definition
How do ionized R Groups affect the shape of a protein?
Term
Polypeptide
Definition
Amino Acid Chain
Term
Teritary (3rd Level) Structure
Definition

Structure Level

 

Further folds amino chain to 3-D shape

 

negatively charged R group pull toward positively charged R group and pushes aways from negatively charged R group

 

hydrophilic - polar, charged - moves to outside

hydrophobic - nonpolar - moves to inside

Term
Autosomal recessive Disorders
Definition

Albinism

 

Tay Sachs

 

Cystic Fibrosis

 

Sickle-Celled Anemia

Term
Autosomal Dominant Disorders
Definition

Huntington's Disease - in Chromosome 4, HH or Hh will get the disease - lose muscle control, convulsions, nervous degeneration causing death

 

Polydactyly - Extra toes & finger

Term
Details of Pedigree
Definition

Roman Numerals = generations

Squares = males

Circles = females

Shaded/darken = condition that is being studied

Unshaded = individuals that have the dominant phenotype and at least on dominant allele.

Symbols with lines = carriers

Term
Autosomal Dominant
Definition

A dominant condition is transmitted in unbroken descent from each generation to the next.

 

Most matings will be the form Mm x mm (Heterozygous or Homozygous) recessive

 

50% for each child to receive mutated gene & be affected

Term
Autosomal Recessive
Definition

recessive trait that will only manifest itself when homozygous

 

Severe conditions: unlikely to live so most matings bw two heterozygous carriers

 

1/4 chance each child will be affected

Term
Coefficient of inbreeding
Definition

the chance that both maternal and paternal alleles at one locus are identical by descent

 

or

 

The proportion of all individual's genes that are homozygous bc of identity by common descent

Term
Dominant Trait
Definition

every individual who carries the dominant allele manifests the trait & has at least one affected parent

 

trait appears in each generation (easy to identify)

Term
Autosomal Dominant Trait
Definition

appears equally in males & females

 

Both sexes transmit the trait to their offspring

 

Does not skip generations

 

unaffected persons do not transmit the trait

 

Affected persons have at least one affected parent

Term
Recessive Trait
Definition

appears only when a person inherits 2 alleles

 

Appear to skip generations

 

2 affected individuals are offspring of relatives

Term
Autosomal Recessive Trait
Definition

Appears in both sexes with equal frequency

 

Trait tends to skip generation

 

Affected offspring usually born to unaffected parents

 

Appears more frequently among children of consanguine marriages

Term
Membrane Proteins
Definition

Adhesion

 

Communication

 

Receptor

 

Recognition

Term
Plasma Membrane Structure & Assembly
Definition

Phospholipid bilayer is a fluid matrix

 

Bilayer is two-dimensional solvent

 

Lipids & proteins can undergo rotational and lateral movement

 

are asymmetric

Term

Phospholipids

 

Proteins

 

Glycolipids

 

Sterols

Definition

Plasma membrane is a mosaic of:

 

Term
Diffusion
Definition

Net movement of like molecules or ions down a concentration gradient

 

Although molecules collide randomly, the net movement is away from the place with the most collisions (down gradient)

Term
Non-mediated Transport
Definition

transport occurs through simple diffusion where the rate of diffusion depends on the concentration gradient and the substances solubility in the membrane's nonpolar core

 

water, O2 and steroids diffuse readily

Term

Passive transport

 

Active Transport

 

 

Definition
What are 2 caterogies of mediated transport?
Term
Active Transport
Definition

Membrane crossing mechanism (Mediated Transport)

 

Tranporter protein must be activated - ATP gives up phosphate to activate transporter

(think of transporter as locked gate and ATP is the key)

 

Needs additonal energy input

Term
Passive Transport
Definition

Membrane crossing mechanism (mediated transport)

 

Doesn't require additional energy input

 

Flows down the concentration gradient (high to low)

 

Allows solutes to move both directions

Term

Endocytosis

 

Exocytosis

Definition
What are the 2 bulk transporters?
Term
Endocytosis
Definition

Membrane Crossing Mechanism (Bulk Transport)

 

Patch of plasma membrane sinks inward and seals back on itself

 

Allows things in

Term
Exocytosis
Definition

Membrane Crossing Mechanism (Bulk Transport)

 

Cytoplasm fuses with plasma membrane so its contents are dumped out

 

Expels things out

Term
Solutes
Definition
Dissolved particles
Term
solvents
Definition
Dissolves the particles
Term
Osmotic Pressure
Definition

Pressure applied to solution to prevent influx of water

 

Also called hydrostatic pressure

Term
Osmosis
Definition

Diffusion of water across a selectively permeable membrane

 

H2O diffuses higher to lower concentration

 

Side with most solutes has lowest water concentration

Term
Dialysis
Definition

Type of diffusion of solutes through membrane (selective diffusion)

 

Allows diffusion of low-molecule-weight solutes (crystalloids)

 

Prevents diffusion of high-molecule-weight solutes (macro-molecules)

 

low-molecular-weight solutes removed by placing pure solvent outside membrane

Term

1. Glucose

 

2. Cl-bicarbonate exchanger

 

Definition
2 examples of Passive Transports
Term

1. Na/K pump (sodium-potassium pump)

 

2. ABC Transporters

Definition
2 examples of active transports
Term
ABC Transporter
Definition

Active Transport

 

ATP-dependent multidrug transporter

 

pumps drugs out of cells

Term
Thylakoid membrane
Definition
Where does the light-dependent reaction occur?
Term

1st stage - light-dependent reaction

 

2nd stage - light-independent reaction

Definition
What are 2 stages of photosynthesis?
Term

Glucose

(Passive Transport)

Definition

Glucose binds to transporter

 

Bound glucose makes protein change shape & closes behind glucose

 

Glucose exposed to inside and detaches from transporter

 

Transporter is vacant and protein regains its shape

Term

Na/K pump

(sodium-potassium pump)

Definition

Active Transport

 

ATP hydrolysis drives Na out and K in

 

Antiport - 3 positive charges exit for every 2 that enter

Term
Osmolarity
Definition
Number of solute particles in volume of liquid
Term
Recombinant DNA technology
Definition

set of techniques for taking one or more genes from one organism and inserting it/them into the genome of another organism.

 

Often referred to as genetic engineering

Term

1 - cut out specific sequence of DNA (gene of interest) from donor organism

 

2 - insert gene of interest into DNA of recipient organism

Definition
What are 2 parts of genetic engineering process?
Term
Restriction enzyme
Definition

enzyme that cuts DNA into small fragments

 

example: PvuII - only cuts mutated DNA

Term
Negative Charge
Definition
What charge do DNA molecules have?
Term
Tumor Suppressor Gene
Definition
Inhibits cell division
Term

1. plasmids - small sort-of-circular pieces of DNA

 

2. viruses

 

(Gene placed inside and recipient organism exposed to them)

Definition
What are 2 ways to insert a gene into another organism's genome?
Term
Enzyme beta-lactamase
Definition

In plasmid, pUC18, gene bla contains DNA code to make this enzyme

 

enzyme makes cells resistant to the antibotic ampicillin

Term
enzyme luciferase
Definition

enzyme found in luminescence gene called lux that is in bacteria named Photobacterium fischeri

enzyme needed for a checmical reaction that produces light

 

normally found in organs of certain plankton, fish and squid (allows them to glow in the dark)

Term

Metabolism, reproduction, growth & cellular organization

 

also: movement, excretion, sensitivity (response to stimulus), respiration & nutrition

 

POTENTIAL to carry out life processes

Definition
4 key characteristics that all living organisms have in common
Term
Producers
Definition

Makes their own food

 

example: plants

Term
Ecosystem
Definition
Community that interacts with its physical and chemical environment through inputs and outputs of materials and energy
Term
Community
Definition

All of the various species living

 

(all populations of all species in specified area)

Term
Biosphere
Definition
All regions of the earth's crust, oceans and atmosphere
Term
Population
Definition
Group of individuals of same kind of organisms or species in specified area
Term

1. Bacteria - single-celled, no nucleus, prokaryotic

 

2. Archaea - single-celled, no nucleus, prokaryotic

 

3. Eukarya - multi-celled, has nucleus, eukaryotic

Definition
What are the 3 domain classications?
Term
Scientific Theory
Definition

When hypothesis has been repeatedly & rigorously tested & supported

 

Successful hypothesis

Term

 

1. observe event

2 make prediction (develop hypothesis)

3. test prediction

4. observe results

5. revise hypothesis

6. repeat as needed

Definition
6 steps of Scientific Method
Term
Hypothesis
Definition

often in form of statement

 often expressed negatively

 sometimes crude attempts to offer possible explaination for observations

 testable predictions

Term
Prokaryotes
Definition

Single-celled organism

 

no nucleus or organelles

 

Achaea & Bacteria

Term
Eukaryotes
Definition

multi-celled organism

 

DNA inside nucleus

 

Plants, animals, protists & fungi

Term
Cells
Definition
Smallest unit of life that can survive and reproduce on its own
Term
Consumers
Definition

Depend on energy stored in tissues of producers

 

humans, animals

Term
Decomposers
Definition
breakdown remains & wastes
Term
Atomic Number
Definition

Number of protons in nucleus of atom of given element

 

# of protons = # of electrons

Term
Electrons
Definition

negative subatomic particle

 

particles that occupy orbitals around atomic nucleus

 

repel each other

Term

Mass Number

(Atomic Weight)

Definition

Represents # of protons & # of neutrons

 

Isotopes: vary in mass#

Term
Energy Shell
Definition
Energy levels of atoms that contain orbitals with electrons
Term
Neutron
Definition
uncharged subatomic particle in the atomic nucleus
Term
Proton
Definition

positively charged subatomic particle in nucleus of all atoms

 

It's number defines element

Term
Molecule
Definition
Unit in which 2 or more atoms join together by chemical bonds
Term
Ionic Bond
Definition

Chemical bond

 Strong mutual attraction between ions with opposite charged

 If loses electron - positively charged -- If gains electron - negatively charged

bond in table salt (NaCl)

Term
Hydrogen Bonding
Definition

Molecule held together by polar covalent bond & has no net charge

 

Interaction between covalently bonded hydrogen atom in donor group & a pair of non-covalently electrons on an acceptor group

Term
Covalent Bond
Definition

2 atoms share pair of electrons to fill outermost shell

 

Non-polar - share electrons equally

Polar - don't share electrons equally

Term
Condensation
Definition

2 molecules covalently bond into a larger one

 

forms polymers from subunits

 

enzymes remove -OH from one molecule, H from another and form bond between two molecules (O)

Term

1. Polarity - Partial charged poles

2. Temperature-Stabilizing - Takes alot of heat to break hydrogen bonds

3. Solvent - dissolves many things

4. Cohesion - resists breaking apart (surface tension)

Definition
What are 4 important properties of water?
Term

0 to 14

 

0 = most acidic; highest H+

 

14 = Most basic; lowest H+

 

7 = Neutral

Definition
What is the range of the pH scale?
Term
H+ (hydrogen ion) concentration
Definition
What does the pH scale measure?
Term
Cleavage
Definition
Molecules split into 2 smaller ones as by hydrolysis
Term
Electron Transfer
Definition
One or more electrons are taken from one molecule and are donated to another molecule
Term
Functional Group Transfer
Definition
One molecule gives up functional group entirely and a different molecule immediately accepts it
Term
Hydroxyl
Definition

Functional Group

 

-OH

 

Hydrophilic

 

In sugars and amino acids

Term

1. hydroxyl

2. methyl

3. carbonyl

4. carboxyl

5. amino

6. phosphate

Definition
6 Functional Groups
Term
Carbon Bonding Behavior
Definition

Carbon has 6 electrons

 

1st shell = 2 electrons  2nd shell = 8 electrons

3rd shell = 8 electrons

 

Can form up to 4 covalent bonds

 

Can form chains or rings

Term
Carbonyl
Definition

Functional Group (-COH)   --  hydrophilic

 

In sugars, amino acids & nucleotides

 

Aldehyde - has 1 hydrogen and 1 R group

at end of carbon backbone (glucose)

 

Ketone - No hydrogen, 2 R groups

in middle of carbon backbone (fructose)

Term
Methyl
Definition

Functional Group

 

hydrophobic

 

In fatty acid chains

Term
Rearrangement
Definition
juggling of internal bonds converts one type of organic compound into another
Term
Carboxyl
Definition

functional group

 

In amino acids, fatty acids, carbohydrates

 

highly polar

 

Acts as acid (releases H+)

Term
Monosacchride
Definition

Simplest Carbohydrates

 

Glucose & Fructose (Sweet tasting)

 

Hydrophilic

Term
Carbohydrates
Definition

any molecule of carbon, hydrogen & oxygen

Must have at least 3 carbons

 

Monosaccharides (simplest sugars)

Oligosaccharides (few sugars)

Disaccharides (2 monosacchrides formed)

Polysaccharides (many sugars)

Term
Phosphate
Definition

functional group  -- hydrophilic

 

In nucleotides (ATP, RNA, DNA), many proteins & phospholipids

 

Acidic

Term
Disaccharides
Definition
formed when 2 monosacchrides undergo a dehydration synthesis (formed by condensation reaction)
Term
Polysaccharides
Definition

many sugars

 

straight or branched chains

 

Cellulose - cell wall of plants

starch - storage in plants

glycogen - storage in animals

chitin - hard exoskelton (contain nitrogen)

Term

1. Autosomes

2. Sex Chromosomes

Definition
2 categories of chromosomes
Term
Autosome Chromosome
Definition

non-sex chromosome that are same length, shape and have the same centromere location - carry the same genes for both male and female

Term
Sex Chromosomes
Definition

paired chromosomes that are different size and related to the sex of the organism

 

XX = Female    XY = Male

 

X and Y chromosomes function as homologues during meiosis

Term
Female Sex Determination
Definition

2 copies of X chromosomes (XX)

 

Each X chromosome inherited from each parent

 

Homozygous

Term
Male Sex Determination
Definition

Have 1 X chromosome & 1 Y chromosome

X inherited from mother - Y inherited from father

 

Because 1 X chromosome, any recessive alleles carried will be expressed

 

Hemizygous

Term
Y Chromosome
Definition

Fewer than 2 dozen genes identified  --

Carries 307 genes

 

SRY gene is master gene for sex determination - forms in the testes

 

Band located at top of chromatid

(if band absent, then SRY gene absent and will not be male)

Term
X Chromosomes
Definition

Carries approx. 2000 genes (1336 genes)

 

Most genes with nonsexual traits

 

can be expressed in both males & females

 

Doesn't have SRY gene

(due to absence, forms the ovaries instead of the testes)

Term

- arrested cells are broken apart

-metaphase chromosomes are fixed & stained

-chromosomes are photographed through microscope

-photograph of chromosomes is cut up and arranged to form karyotype diagram

Definition
How is karyotype prepared?
Term
Linkage Group
Definition

A pair or set of genes on a chromosome that tend to be transmitted together

 

Genes on one type of chromosome

Term
Full Linkage
Definition
with no crossovers, half of the gametes have one parental genotype and half have the other
Term
Incomplete Linkage
Definition

unequal ratios of 4 types of gametes

 

most gametes have parental genotypes

 

A smaller number have recombinant genotypes

Term
Homozygous
Definition
having to identical alleles at a locus
Term
Phenotype (Trait)
Definition
The appearance or manifestation of a character
Term
Genotype
Definition
Set of alleles that an individual possesses
Term
Heterozygous
Definition
having 2 different alleles at a locus
Term
Atom
Definition

- fundamental building blocks of all substances, living and nonliving

-smallest particles that retain properties of an element

- made up of subatomic particles

Term
Cellulose
Definition

tough, indigestible, structural material in cell wall of plants

polysaccharide

Term
starch
Definition

polysaccharide

easily digested, storage form in plants

Term
Glycogen
Definition

-sugar storage form in animals

-stored in muscle & liver cells

-when blood sugar decreases the liver cells degrade and release glucose

-looks like a bush

Term
Chitin
Definition

structural material for hard parts of invertebrates

contains nitrogen

Term
Lysosome
Definition

Contains digestive enzymes to help break food down

digests, recycles materials

Term
Golgi Body
Definition

makes, process & packages proteins & lipids

 

Term
Plasmodesma
Definition
communication junction between adjoining cells
Term

1. nuclear envelope

2. nucleoplasm

3. nucleolus

4. chromatin

Definition
What are the four components of the nucleus
Term
nucleolus
Definition
In a nucleus, a roundish mass of material from which RNA & proteins are assembled into ribosomal units
Term
Nucleoplasm
Definition
A semifluid portion of the nucleus enclosed by the nuclear envelope
Term
Nuclear Envelope
Definition
double membrane that encloses the nucleus
Term
Chromatin
Definition
all of the DNA molecules and associated proteins in a nucleus
Term
Plasmodesmata
Definition
Microscopic channels that cover cells enabling transport & communication between them.
Term
Chloroplasts
Definition
use sunlight to create food by photosynthesis
Term
Rough ER
Definition
modifies new polypeptide chains
Term

1. microtubules

2. microfilaments

3. intermediate filament

Definition
What are the three cytoskeleton elements?
Term
Cytoskeleton
Definition
Structually supports, imparts shape to cell, moves cell and its components
Term
Smooth ER
Definition

synthesis of lipids

makes lipids, degrades fats, inactivates toxins

Term
Tight Junction
Definition
seals the cell so nothing can get through
Term
Cytoplasm
Definition
The semi-fluid matrix between a cell's plasma membrane and its nucleus or nucleoid
Term

1. tight junction

2. adhering junction

3. gap junction

Definition
What are 3 cell to cell junctions common in tissues of most animals?
Term
Nucleus
Definition
Keeps DNA and its transcription into RNA away from potentially damaging reactions to cytoplasm
Term
Adhering Junction
Definition
Holds cells together like sheets
Term
Gap Junction
Definition
channel that allows communication between cells
Term
Bacterial Flagellum
Definition

Long, slender cellular structure used for mobility

Eukaryotes - whips side to side

Prokaryotes - rotates like propeller

Term
Pilus
Definition

A protein filament that projects from the surface of some bacterial cells

used to cling to surface or move across surfaces

Term
Mitochondia
Definition

energy powerhouse, produces many ATP by aerobic respiration

makes energy out of food

Term

1. bacterial flagellum

2. plasma membrane

3. pilus

4. DNA in nucleoid region

5. cytoplasm with ribosomes

Definition

What are 5 components of prokaryotic cell?

 

Term
Nucleoid
Definition
The region of prokaryotic cell where the DNA is concentrated
Term
Ribosomes
Definition
protein factory
Term
Saturated Fatty Acids
Definition

-single bonds between carbons

-chains straight so pack tightly

- short chains = softer fats

-long chains = harder fats

Term
Fatty Acids
Definition

-has carboxyl group at end (-COOH)

-saturated and non-saturated fatty acids

Term
Triglycerides
Definition
3 Fatty acid chains attached to glycerol (head)
Term
Details of periodic table
Definition

-symbol of each element is abbreviation of its name

-elements ordered by atomic number

Term
Amino
Definition

Functional group  --  hydrophilic

In amino acids and certain nucleotides

Acts as weak base (accepts H+)

Term
Lipids
Definition

perform 3 biological functions: form bilayer of membrane, store energy and signal between cells

consists of fatty acids, tricyglycerols, glycerophospholipids, sphingolipids, steriods and waxes

Term
Unsaturated Fatty Acids
Definition

-has one or more double bonds

-chains kinked or bend so pack less orderly

-short chains = harder fates

-long chains = softer fats

Term
Triglycerols
Definition

-energy reservoirs in animals

-allows starvation survival up to 3 months

-function to insulate

-Saponification: formation of soap

Term
Glycerophospholipids
Definition

Phospholipids - main component in cell membrane

head is hydrophilic

2 fatty acid tails are hydrophobic

Term
Steroid
Definition

rigid backbone of 4 fused together carbon rings

most common is cholesterol

Term
Transfer RNA
Definition
adapter molecule translates RNA delivered by messenger RNA into specific amino acid sequences
Term
Messenger RNA
Definition
Carries genetic info from genes to ribosomes
Term
RNA
Definition

Nucleotide = ribose

Bases = adenine (A), Uracil (U), Cytosine (C) and Guanine (G)

A=U and C=G

Single stranded - secondary structure

Term
DNA
Definition

contains instructions for growth & development

Nucleotide = deoxyribose

Bases = adenine (A), Thymine (T), Cytosine (C) and Guanine (G)

A = T and C = G

Double helix; antiparallel

Term
Plasma Membrane
Definition

-phospholipid bilayer

-carries many proteins that carry out metabolic processes

In both prokaryotic and eukaryotic cells

outer cell membrane that encloses the cytoplasm

Controls what comes in and out of the cell

Term
Microtubules
Definition

cytoskeleton element -- largest element

composed of protein tubulin

arise from microtubule organizing centers (MTOCs)

polar & dynamic

involved in shape, mobility, cell division

form spindle fibers that chromosomes attach to be moved

Term
Cell Wall
Definition
Protects and supports the cell structure
Term
Nucleic Acid
Definition

composed of nucleotides

single-stranded RNA and double-stranded DNA

sugar phosphate backbone

Term
Nucleotide
Definition
five carbon sugar, nitrogenous base and a phosphate group
Term
Proteins
Definition

chain of amino acids linked by peptide bonds

links amino group of one amino acid to carboxyl group of another amino acid

Levels of protein structure

primary (sequence), secondary (structure), tertiary (one chain) and quaterary (multiple chains)

Term
Homeostasis
Definition
sensing & adjusting to change to keep conditions in internal environment within range that favors cell survival
Term
Tissue
Definition
collection of cells that work together
Term
Control Group
Definition
group that allows a standard of comparison for the experimental group
Term
evidence
Definition
Science is based on ...
Term
synthesize proteins
Definition
If a cell lacked ribosome, it would not be able to ....
Term
+2
Definition
Calcium atoms have 2 electrons in outermost shell.  As result, calcium will form ions with a charge of
Term
nature of the R group
Definition
Each amino acid differs from other in the ...
Term

11

A-1-A-2-A-3-A-4-A-5-A-6-A-7-A-8-A-9-A-10-A (11 A (amino acids)

Definition
If polypeptide contains 10 peptide bonds, How many amino acids does it contain?
Term
Enzymes
Definition
speed up metabolic reactions
Term
nucleotide coenzyme
Definition
energy carriers such as NAD and FAD
Term
Glucose
Definition
6 carbon sugar
Term
Central vacuole
Definition
makes cell larger
Term
Stoma
Definition
Where does the light-independent reaction occur?
Term
Phospholipids
Definition
main component of cell membrane
Term
Amino Acid
Definition

contains amino group (NH2) and carboxyl group (-COOH) and hydrogen

one r-group (variable)

20 amino acids in proteins

Term
Autotroph
Definition

organism that makes its own food using carbon from CO2 and energy from light or inorganic substances

Example: plants

Term
Heterotroph
Definition

organisms that obtain carbon from organic compounds assembled by other organism

get energy from eating plants and one another

Example: animals

Term
Pigments
Definition
light absorbing molecules that absorb some wavelengths and transmit others as visible light (colors)
Term

1. Chlorophyll A & B

2. Carotenoids

3. Xanthophylls

4. phycobilins

5. anthocyanins

Definition
What are 5 types of pigments?
Term
Phycobilins
Definition

Pigment that reflects red

In red algae & cyanobacteria

Term
Anthocyanins
Definition
Pigment that reflects red and gives many flowers their color
Term
Carotenoids
Definition

pigment that reflects yellow, orange & red -- Absorbs blue-violet & blue-green

In plants, algae & cyanobacteria

Antioxidant (neutralize oxygen radicals)

Doesn't contain oxygen (only difference from xanthophylls)

Term
Xanthophylls
Definition

Accessory pigment

lutein (yellow) found in plants

yellow, brown, purple or blue

contains oxygen (only difference from carotenoids)

Term
Pigment Structure
Definition

-alternating single & double bonds

-bonds represent shared electrons between carbon atoms

Term
Chlorophyll a & b
Definition
What are the main pigments?
Term

1. carotenoids

2. xanthophylls

3. phycobilins

4. anthocyanins

Definition
What are the 4 accessory pigments?
Term
Chlorophyll b
Definition

pigment that reflects blue-green

in plants, green algae & cyanobacteria

Absorbs violet & red light

Term
Chlorophyll a
Definition

pigment reflects yellow-green

In all plants, algae & cyanobacteria

Absorbs violot & red light

Term
Chlorophyll b
Definition

pigment that reflects blue-green

In plants, green algae & cyanobacteria

Absorbs violet & red light

Term

-stored as triglycerides & broken down to glycerol & fatty acids

-Glycerol converted to PGAL and enters glycolysis

-Fatty acids converted to Acetyl CoA and enters Kreb cycle

Definition
How are dietary fats broken down?
Term

-proteins are broken down to amino acids

-Amino group is removed and forms ammonia which is converted to urine and excreted

-Carbon backbones enters the Kreb cycle or it's preparatory reactions

 

Definition
How are proteins broken down?
Term

1. Diffusion

2. Dialysis

3. Facilitated Diffusion

4. Osmosis

5. Filtration

Definition
What are the 5 types of Passive Transporters?
Term
Facilitated Diffusion
Definition

-Passive transport

 

-Carrier protein in plasma membrane accelerates movement of relatively large molecules from region of higher to region of lower concentration

 

-passive process that requires a protein for movement of a solute across a membrane

Term
Filtration
Definition

-passive transport

 

-hydrostatic pressure pushes water & nutrients across membrane (across walls of small blood vessels)

Example: Kidneys

Term

1. Bulk transport

2. endocytosis

- phagocytosis and pinocytosis

3. exocytosis

4. receptor-mediated endocytosis

Definition
What are 4 types of active transports?
Term

1. Aerobic pathway

 

2. Anaerobic pathway

Definition
What are 2 energy-releasing pathways?
Term
Aerobic Pathway
Definition

- energy-releasing pathway

- evolved later

- requires oxygen

- Starts in cytoplasm with glycolysis and ends in mitrochondria

-Extract energy from glucose

Term

RuBP

Ribulose biphosphate

Definition
In the Calvin Benson cycle, what molecule is regenerated?
Term

1. PGA (phosphoglycerate)

 

2. PGAL (phosphoglyceraldehyde)

Definition
In the Calvin Benson Cycle, what molecules are produced?
Term
Anaerobic Pathway
Definition

-energy-releasing pathway

-evolved first

-doesn't require oxygen

-starts in cytoplasm with glycolysis and ends in cytoplasm

-common among prokaryotes and protists that live where oxygen is absent

Term

Rubisco

 

Found on the stromal surface of the thylakoid membrane

Definition

In the Calvin Benson Cycle, what is the most abundant protein on earth?

 

Where is it located?

Term

Catalyzes CO2 fixation to RuBP

 

2 catalytic activities are oxygenase & carboxylase

Definition
What is the function of rubisco?
Term
Photorespiration
Definition
process that uses light to produce CO2 by consuming O2
Term

the stomata closes on hot, dry days increasing the oxygen level & lowering the CO2 level.

 

Rubisco attaches RuBP to O2 instead of CO2

 

Forms 1 PGAL instead of 2

 

In C3 plants

Definition
What causes photorespiration?
Term
Malignant
Definition

- neoplasm

 

- cancerous

 

- grow & divide abnormally disrupting surrounding tissues physically & metabolically

Term
Benign
Definition

- neoplasm

 

- noncancerous

 

- grow slowly & retain surface recognition protein that keep them in a home tissue

Term

1. benign

 

2. malignant

Definition
What are 2 types of neoplasms?
Term
Neoplasm
Definition

abnormal masses of cells that lost controls over how they divide and grow

 

benign & malignant

Term
HeLa Cells
Definition

- descendents of tumor cells from a woman named Henrietta Lacks

 

- line of human cancer cells that can be grown in culture

-not all cells can be grown in culture

 

-growing cells in culture allows researchers to investigate processes & test treatments w/o danger to patients

Term

-during transition between prophase I and metaphase I

 

-microtubules from spindle poles attach to kinetochores of chromosomes

Definition
Which stage of meiosis does random alignment occur?
Term
Complete Dominance
Definition

the phenotype of the heterozygotes (Aa) cannot be distinguished from one of the homozygotes (AA)

 

Example: Gerbils

AA = brown; aa = black; Aa = brown

No way can tell is AA or Aa

Term
Incomplete Dominance
Definition

Heterozygote phenotype is somewhere between that of two homozygotes - often described as blending though the alleles themselves don't blend - The phenotype look like the two traits have blended together

 

Example: Snapdragons: If have one red (AA) and one white (aa) - a pink snapdragon will be produced.

The reason is that homozygous red plant produces a lot of pigment and the homozyous white produces no pigment so the heterozygote will produce half as much of the homozygous red

(Note: there is no dominant allele)

 

Ration for F1 generation is 1:2:1 (has the same genotypic and phenotypic ratios)

Term
Co dominance
Definition

phenotype of the heterozygote includes the phenotypes of both homozygotes

 

Example: ABO blood types - A and B are both expressed

Example: have a dark green clover and a light green clover - will produce a clover with both light green and dark green pigment expressed

 

No dominant allele

Term
Karotype
Definition
diagnostic tool that helps analyze an individual's diploid complement of chromosomes
Term

1. Interphase

2. Prophase

3. Metaphase

4. Anaphase

5. Telophase

6. Cytokinasis

Definition
what are 6 stages of Mitosis?
Term
Prophase I
Definition
What stage of Meiosis does Crossing over occur?
Term
Interphase (Mitosis)
Definition

DNA replicated but has not formed the condensed structure of chromosomes.

 

They remain loosely coiled chromatin

Term
Prophase (Mitosis)
Definition

Chromatin condenses into discrete chromosomes

 

spindles form at opposite "poles" of the cell

 

Nuclear envelope breaks down

Term
C3 Plants
Definition

located in moist temperate zones

 

Examples: sunflowers, beans.

Term
C4 Plants
Definition

in subtropical regions

 

CO2 fixed twice in different cells

 

Example: Sugar Cane

Term
CAM Plants
Definition

In very hot climates

 

Carbon fixed twice in same cell

 

Day (stomata closes) & reopens at night

Term

Allows researchers to:

 

1. investigate basic genetic processes

 

2. reconstruct life's evolutionary history

 

3. devise counterattacks against rapidly mutating pathogens

Definition
What is recombinant DNA technology?
Term

enzymes that chop up viral DNA at a specific sequence

 

Number of cuts depend on number of times "target" sequence occurs

Definition
What are restrictive enzymes?
Term
Metaphase (Mitosis)
Definition
The spindle fibers attach themselves to the centromeres of the chromosomes and align the chromosomes at the equatoral plate
Term
Anaphase (Mitosis)
Definition
The spindle fibers shorten and the centromere splits, separated sister chromatids are pulled along behind the centromeres
Term
Telophase (Mitosis)
Definition
The chromosomes reach the poles of the respective spindles
Term
Cytokinasis
Definition
Process of splitting the daughter cells apart.  A furrow forms and the cell is pinched in two.
Term

G1

S

G2

Definition
What are three phases in Interphase Stage of Meiosis?
Term
Duplication Mutation
Definition

DNA sequences are repeated two or more times

 

Can occur through unequal crossovers in Prophase I

Term
Deletion Mutation
Definition

Loss of some part of the chromosome

 

most are lethal or cause serious disorders

Term
Inversion Mutation
Definition

part of the sequence of DNA within the chromosome becomes oriented in the reverse direction with no molecular loss

 

May not affect the carrier's health but can affect fertility

 

Crossovers in inverted region during meiosis may result in deletions or duplications that affect the viability of the forthcoming embryos

Term
Translocation Mutation
Definition

If a chromosome breaks, the broken part may get attached to a different chromosome or different part of the same chromosome

 

Most are reciprocal or balanced - two chromosomes exchange parts

 

Philadelphia Chromosome - Chromosome 9 and 22 change places

-Associated with cancer, chronic leukemia

Term
Gene
Definition
sequences of DNA that encode heritable information about traits
Term
Allele
Definition
Unique molecular form of the same gene
Term
Locus
Definition
specification location of where each gene occurs
Term
Homologous Chromosome
Definition
Chromosomes of a pair that have the same length, shape & assortment of genes that briefly zipper together during meiosis
Term
Somatic Cell
Definition
cell with chromosome number as diploid (2n) and there are 2 of each type of chromosome
Term
Gametes
Definition
mature reproductive cells in animals formed by meiosis of germ cells
Term
Diploid
Definition
chromosome number of human body cells that has 2 of each type of chromosome
Term
Haploid
Definition
the number after meiosis halves the parental chromosome number
Term
Chromatin
Definition
All of the DNA molecules & associated proteins in a nucleus
Term
Chromatid
Definition
2 molecules of DNA that stay attached as one chromosome until late in nuclear division
Term
Chromosome
Definition

a complete molecule of DNA and its attached proteins

 

carries part or all of an organism's genes

 

linear in eukaryotic cells

circular in prokaryotic cells

Term
Through crossing over in Prophase I and random alignment in Metaphase I
Definition
How is variation in traits among offspring brought about?
Term
Monohybrid
Definition
test for dominant or recessive allele at one locus
Term
Di-hybrid
Definition
test for dominant or recessive allele at 2 loci
Term
Testcross
Definition
method of determining genotype
Term
Polyploidy
Definition
organism that carries an extra set of chromosomes
Term
Aneuploidy
Definition
too many or too few copies of a chromosome
Term
Nondisjunction
Definition

one or more chromosomes do not separate during mitosis or meiosis

 

gametes with the wrong number of chromosomes

Term
Alcoholic Fermentation
Definition

Anaerobic pathway that breaks down glucose and forms ethanol and ATP

 

Begins in glycolysis

 

End reactions regenerate NAD+ so glycolysis can continue

 

Net yield: 2 ATP per glucose

Term
Lactic Fermentation
Definition

Anaerobic pathway that breaks down glucose; forms ATP & lactate

 

Starts in glycolysis

 

End reactions regenerate NAD+ to continue glycolysis

 

Net yield: 2 ATP per glucose

Term
Hypotonic
Definition
fluid with lower concentration gradient
Term
Hypertonic
Definition
fluid with higher concentration gradient
Term
Punnett Square
Definition
grid used to calculate the probabilities of genotypes and phenotypes that will occur in offsprings
Term
Genotype ratio for monohybrid
Definition
1:2:1
Term
Sodium Potassium Pump
Definition

Active transporter that pumps 3 sodium ions out across the plasma membrane for every 2 potassium ions pumped in

 

(High concentrations of potassium and low concentrations of sodium)

Term
ABC Transport
Definition

active transport that utilizes energy of ATP hydrolysis to transport various substrates across cellular membrane

 

Pumps out toxin & drugs from the cells

Term

Through the Cori Cycle

 

metabolic pathway in which lactate is produced by anaerobic glycolysis in the muscles move to the liver and is converted to glucose which then returns to the muscles and is converted back to lactate

Definition
How is lactate recycled?
Term
Mendel's Theory of Segregation
Definition

diploid cells have pairs of genes, on pairs of homologous chromosomes.

 

The 2 genes of each pair are separated from each other during meiosis, so end up on different gametes

Term
Mendel's Theory of Independent Assortment
Definition
As meiosis ends, genes on pairs of homologous chromosomes have been sorted out for distribution into one gamete or another, independently of gene pairs on other chromosomes
Term
Genetics of ABO blood types
Definition

three alleles

 

gene that controls ABO type codes for enzyme that dictates structure of a glycolipid on blood cells

 

2 alleles A and B are codominant when paired

 

3rd allele O is recessive to the others

Term
Pleiotrophy
Definition

one gene may influence two or more traits

 

Example: Marfan syndrome - genetic disorder that arises from mutations in fibrillin gene

Term
Multiple Alleles
Definition
locus has more than 2 alternative alleles
Term

Tyrosinase - heat-sensitive enzyme

 

enzyme catalyzes one step in the synthesis of brown/black pigment melanin only in cooler regions (legs, tail, ears)

 

Yarrow plant - genetically identical but grow differently at different elevations

Definition
How does environment influence the phenotype?
Term
Reverse transcriptase
Definition

transcribes the retroviral RNA into a complementary DNA (cDNA) to form a DNA:RNA hybrid

 

DNA synthesis is primed by a host cell tRNA whose 3' end is partially unfolded to base pair with the viral RNA & all RNA tumor viruses contain a reverse transcriptase

Term
3.2 billion nucleotides
Definition
How many nucleotides does the human genome have?
Term

1 - must be able to cut & rejoin DNA at precise location

 

2 - select DNA molecule to serve as carrier (vector)

 

3 - prepare & insert foreign DNA

 

4 - Introduce vector into host organism (process called transformation)

 

5 - Screen for host cells replicating the hybrid DNA

Definition
5 basic steps of molecular cloning
Term
Plasmids
Definition

small circles of DNA with just a few genes

 

Bacteria can usually survive without plasmids

 

Used to carry foreign DNA to host cells & are called cloning vectors

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