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Unit 1
Introduction, Taxonomy, Origin of Life, Survey of Monera, Protista, Fungi
82
Biology
Undergraduate 3
07/09/2013

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Term
Taxonomy
Definition
The science of classification
Term
Aristotle
Definition

Created the first taxonomic system

System was flawed

Term
Carolus Linaeus
Definition
  • Father of modern taxonomy 
  • Corrected Aristotle's system of taxonomy 
  • Created binomial nomenclature
  • Used morphological characteristics for classification
  • This is what we use today
Term
Taxa Hierchy
Definition
  • Domain
  • Kingdom
  • Phylum
  • Class
  • Order
  • Family
  • Genus
  • Species
Term
The Five Kingdoms of Life
Definition
  1. Monera
  2. Protista
  3. Fungi
  4. Plantae
  5. Animalia
Term
Monera
Definition
  • Bacteria - P U H
  • Blue-Green Bacteria - P U,C A
Term
Protista
Definition

Protozoa - E U H

Algae - E U,C A

Seaweeds - E M A

Term
Fungi
Definition

Mushrooms - E M H

Yeasts - E U H

Term
Plantae
Definition

Mosses, Liverworts, Ferns, Gymnosperms, Angiosperms

 

E M A

Term
Animalia
Definition

Sponges, Cnideria, Worms, Arthropods, Molluscs, Echinoderms, Chordates

 

E M H

Term
The Domains of life
Definition
Bacteria, Archaea, Eukaryota
Term
Origin of life on Earth
Definition

4.5 BYA - Earth forms

4.0-3.0 BYA - Origin of life

3.5 BYA - Oldest prokaryotic organisms

1.5 BYA - Earliest eukaryotic organisms

0.5 BYA - earliest animals

 

 

Term
Louis Pasteur
Definition

1862

disproves "spontaneous generation"
(tadpoles appearing in puddles)

 

Term
Alexander Oparin
Definition

1920

theorized about the early atmosphere during the time life arose. Early atmosphere consisted of water vapor (H2O), hydrogen (H2), methane (CH4), and ammonia (NH3), but no molecular oxygen (O2). This represented an atmosphere that contained not only the four essential elements in biochemistry (C, N, H, and O2), but was also a "reducing atmosphere" that would favor the formation of more complex molecules (carbohydrates, lipids, proteins, and nucleic acids) necessary to form the first cells.

Term
Stanley Miller
Definition

1953

 

Conducted an expermient that proved Oparin's reducing atmosphere WAS conductive to the formation of carbohydrates, proteins, nucleic acids, and lipids

Term
5 Events Necessary for the Origin of Life on Earth
Definition
  1. Atsmosphere must contain C, H, O2, and N
  2. Large molecules (carbohydrates, lipids, proteins, nucleic acids) must form from smaller compounds in atmosphere and primitive sea
  3. Cell membranes must form from those large molecules
  4. Genetic machinery must be installed to control replication and other cell functions
  5. Eukaryotic cells must form from prokaryotic cells
Term
Proposed Early Cell Membranes
Definition

Coacervates - First cells had lipid- based membranes (proposed by Oparin)

Microspheres - first cells had protein-based membranes (proposed by Sidney Fox)

 

Term
Origin of Cell's Genetic Machinery
Definition

Short strands of RNA most likely served as the first genes capable of replicating themselves. Certain proteins may have served as enzymes catalyzing the replication process, and the relationship between nucleic acids and proteins began. DNA would have formed much later to contain the genetic code, and to complete what we now think of as the "normal" genetic sequence in which DNA is transcribed into RNA, and RNA is then translated into a protein.

Term
Prokaryotic --> Eukaryotic
Definition

Prokaryotic cells preceded eukaryotic cells. The present structure of the eukaryotic cell was formed by enfolding the cell membrane. The mitochondria and the chloroplasts present in cells evolved from a bacteria-like organism (mitochondrion) and an alga-like organism (chloroplast) that invaded early cells and developed a favorable (mutualistic) association.

Term
Geological Timeline
Definition

Cenozoic - 6.5 MYA - present

Mesozoic - 248 - 65 MYA 

Paleozoic - 590 - 248 MYA

Pre Cambrian - 4.6 BYA - 590 MYA

Term
Cenozoic Era
Definition
Current Era; dominant animals include mammals, dominant plants include flowering plants; modern man
Term
Mesozoic Era
Definition
Era where the dominant animals were the dinosaurs; dominant plants include conifers
Term
Paleozoic Era
Definition
Era where the dominant animals were amphibeans and fish; first vascular plants
Term
Pre-Cambrian Era
Definition
Era where there were no multicellular creatures; marine creature dominant; origin of prokaryotes and eukaryotes
Term
Viruses
Definition
Acellular aggregates (mass) of nucleic acids (DNA or RNA) and protein
Term
The Tobacco-Mosaic Virus
Definition
This was identified by Iwanowsky in the late 1800's, when he found that they could fit through the smallest filters designed for bacteria.
Term
The Viral Structure
Definition

Genome - consists of either double stranded or single stranded RNA or DNA

Capsid - Protein coat that encompasses this genome

Envelopes - Membraneous structures associated with some capsids.

Term
Host Cells
Definition
This is what a virus requires to replicate. It may be a plant cell, an animal cell, or a bacterium
Term
The two viral life cycles
Definition

Lytic cycle

Lysogenic cycle

Term
The Lytic Cycle
Definition
Viral DNA/RNA is injected into the host cell from a viral capsid, where it directs the synthesis of more of the viral genome and more viral capsids which are assembled inside the host cell. More and more are created until the cell lyses, releasing the viral capsids
Term
The Lysogenic Cycle
Definition
Viral DNA is integrated into a host cell, where it may be carried around for years, replicating into other cells carrying the same spliced DNA. Any of these cells may switch to the Lytic cycle at any time, lysing it, relesing the  newly produced viral capsids.
Term
Restriction Enzymes
Definition
Bacterias method of defense, which breaks the viral DNA
Term

ss RNA Viruses


Definition

A. picomavirus - poliovirus, rhinovirus (cold)

B. togaviruses - rubella, yellow fever, encephalitis


C. rhabdovirus - rabies

 

D. paramyxoviruses - measles, mumps

 

E. orthomyxoviruses – influenza

 

F. ebola

 

 G. retroviruses - AIDS, RNA tumor viruses

Term
ss DNA viruses
Definition
Parvovirus - parvo
Term
ds DNA Viruses
Definition

A. Papilloma Virus - Warts, cervical cancer

B. Herpesvirus - Herpes Simplex I (cold sores), Herpes Simplex II (genital herpes), varicella zoster (Chicken Pox, Shingles), Epsteinn-Barr virus (mono, Burkitt's Lymphoma)

C. Poxvirus- smallpox, cowpox

Term
Reverse Transcriptase
Definition
A enzyme that converts RNA into DNA which is then spliced onto the host DNA on a chromosome. The host cell's DNA polymerase will then transcribe the viral DNA into mRNA which will either be translated into the protein of which the viral coat is composed, or will become a new viral genome.
Term
HIV
Definition
Attacks t-helper cells. Without t-helper cells, B cells can not synthesize antibodies
Term
First Vaccines
Definition
Edward Jenner in 1796 when he found the connection between smallpox and cowpox, the poxvirus genus.
Term
Prions
Definition
Proteins, infectious agents that lack a nuclear genome
Term
Kuru
Definition
Prion. Fast onset, leads to total loss of muscle control. ~100% mortality rate.

New Guineau - 1950's: Locals ate brains of cows, unwrapping the prion proteins, making it infectious.
Term
BSE
Definition

Bovine Spongiform 

"Mad Cow Disease"

Found in England, 1980's

Basically Kuru for cows

Term
Creutzfeld-Jacob disease
Definition
Same symptoms as Kuru
Term
Kingdom Monera
Definition
Prokaryotic organisms such as the bacteria and cyanobacteria
Term
Why Prokaryotic cells still exist
Definition
They are able to thrive in environments that are too extreme (acidic, hot, cold, etc) for eukaryotes to exist.
Term
Two major groups of Monera (Prokaryota)
Definition
Cyanobactera (blue-green bacteria) and True Bacteria
Term
Major Bacterial Shapes
Definition
coccus (spherical), bacillus (rod-shaped), spirochete (spiral)
Term
Common Cocci
Definition
Staphylococcus - Staph infection, food poisoning
Streptococcus - strep infections, scarlet fever
Neisseria Gonnorhea - cause of gonnorhea
Term
Common Bacilli
Definition
Escherichia coli (E. colia) - intestinal bacteria
Lactobacillus - ferments milk sugar
Term
Common spirochetes
Definition
Treponema pallidium - causes syphillus
Term
Diseases caused by bacteria
Definition
pneumonia, typhus, typhoid fever, tuberculosis, leprosy, bubonic plague, tetanus, botulism, gangrene, cholera
Term
Prokaryotic cell structure
Definition
nuclear region, ribosomes (creates protein), cytoplasm, cell/plasma membrane, cell wall (PEPTIDOGLYCAN), capsules or slime layers, flagella, conjugation/sex pilli.

Many also develop ENDOSPORES- can withstand extreme temperature and pH ranges
Term
Bacterial Motility Mechanisms
Definition
Flagella, spiral filaments (spirochetes) (corkscrews), gliding
Term
Taxis
Chemotaxis
Phototaxis
Definition
Movement oriented towards or away from a stimulus
Positive or negative concentration gradient
Towards or away from light
Term
Explain bacterial genetics
Definition
Bacteria have one major chromosome, as well as many PLASMIDS, which give the bacterium special properties and in many cases can be exchanged with another bacterium via CONJUGATION
Term
Binary Fission
Definition
Bacteria's ASEXUAL reproduction method
Term
Bacteria's Sexual Reproduction Methods
Definition
1) Conjugation - Plasmids transferred directly via sex pillis
2) Transformation - Bacteria literally splices DNA from the surrounding environment, intentionally mutating itself.
3) Transduction - genes transferred via viruses
Term
Bacterial Nutrition
Definition
Cyanobactera - Autotrophic
True Bacteria - Heterotrophic
Term
Bacterial Metabolism
Definition
1) obligate aerobes - use oxygen for cellular respiration
2) facultative anaerobes - will use oxygen, but can also grow in anaerobic environments
3) obligate anaerobes - can not use oxygen
Term
Nitrogen Fixation
Definition
conversion of atmospheric Nitrogen, into Ammonia, in order for it to be useable.
Term
Nitrosomonas
Definition
Converts Ammonia into Nitrite
Term
Denitrification
Definition
Pseudomonas converts Nitrite into atmospheric Nitrogen
Term
Archaebacteria (The "Extromophiles")
Definition
Unique cell membranes to withstand more harsh environments such as marshes and animal guts.
Term
Ricketsia prowasekki
Definition
Pathogenic Bacteria
typhus
Intracellular parasite spread by lice
Term
Salmonella typhi
Definition
Pathogenic Bacteria
typhoid fever
Caused by salmonella
Term
Mycobacterium tuberculosis
Definition
Pathogenic Bacteria
Tuberculosis
Insane coughing. Causes tubicules.
Term
Pneumonia
Definition
Pathogenic Bacteria
Viruses and even fungus also can cause Pneumonia
Term
Mycobacterium lepromatosis
Definition
Pathogenic Bacteria
Leprosy
Less contagious than other bacterial diseases. Tissue necrosis.
Term
Yersinia pestis
Definition
Pathogenic Bacteria
Bubonic Plague
Rats, 50% pop died, swollen lymph nodes called buboes,
Term
Clostridium tetani
Definition
Pathogenic Bacteria
Tetanus
Obligate anaerobe, rigid paralysis, low mortality
Term
Clostridium botulinum
Definition
Pathogenic Bacteria
Botulism
Obligate anaerobe, food poisoning, flaccid paralysis,
Term
Clostridium perfringes
Definition
Pathogenic Bacteria
Gangrene
Obligate anaerobe, found on food, dangerous in sealed food, tissue necrosis
Term
Vibrio cholerae
Definition
Pathogenic Bacteria
Cholera
Very high mortality rate, water born, massive dehydration
Term
Fungi-like Bacteria Examples
Definition
Actinomycetes- Streptomyces, Mycobacterium
Term
Chemoautotrophs
Definition
Examples: Nitrobacter, Nitrosomonas
Common and necessary in soils
Term
Nitrogen-Fixing Bacteria
Definition
Azotobacter, Rhizobium
Term
Cyanobacteria
Definition
Anabaena, Nostoc, Oscillatoria
Term
Endospore-Forming Bacteria
Definition
Bacillus, Clostridium
Term
Enteric Bacteria
Definition
facultative anaerobes inhabiting the intestines
Escherichia, salmonella, vibrio
Good bacteria
Term
Mycoplasma
Definition
Lack cell walls, smallest of all cells, animal pathogens
Walking Pneumonia
Term
Pseodomonas
Definition
Unusual nutrients, relatively harmless, pink buildup in showers
Term
Rickettsias and Chlamydias
Definition
obligate intracellular parasites.
Rickettsias = Rocky Mountain Spotted Fever, Typhus
Chlamydias = Clamedia
Term
Spirochetes
Definition
helical cells
TREPONEMA PALLIDIUM causes Syphilis. Starts superficial, then "corkscrews" its way deeper and into organs.
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