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UCO Dr.Countaway Exam 1 Flash Cards
UCO Dr.Countaway Cell Biology MW 3-4:15 Exam 1 Flash Cards
154
Biology
Undergraduate 2
09/19/2012

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Term
What is the function of Compartmentalization in membranes?
Definition
Membran compartmentalization allows specialized activities to proceed without external interference and enables cellular activities to be regulated independently of one another.
Term

How does being a scaffold for biochemical activities apply to membranes?

 

Definition
Membranes provide framework within which components can be ordered for effective interaction. With out this all reactions would be left to chance.
Term
What is the significance of a selctively permeable barrier in membrane structure and function?
Definition
Membranes prevent the unrestricted exchange of molecules from one side to the other. They also Provide means of communication between compartments they seperate. Ultimately they control what comes in and what goes out of the cell
Term
What is the significance of the membranes ability to transport solutes?
Definition
The membrane contains machinery for physically transporting substances from one side of the membrane to the other often from an area of low concentration to one that is much higher. The plasma membrane is also able to transport Ions which establishes an ion gradient across itself.
Term
What is the function of intercellular interaction of membranes?
Definition
Allows cells to recognize and signal one another, to adhere when appropriate, and exchange materials and information.
Term
What is the plasma membranes role in responding to external signals?
Definition
Membranes posses Receptors that combine with specific molecules having a complementary structure.
Term
What is the most fundemental examples of the membranes role in Energy Transduction?
Definition
Photosynthesis when light is absorbed by membrane bound pigments and in the transfer of chemical energy from carbohydrates and fats to ATP.
Term
What is the Fluid Mosaic Model?
Definition
Model presenting membranes as dynamic structures in which both lipids and associated proteins are mobile and capable of moving within the membrane to engage in interactions with other membrane molecules.
Term

All membrane lipids are amphipathic.

What does this mean?

Definition
They contain both hydrophobic and hydrophilic regions.
Term
What are the three main types of membrane lipids?
Definition
Phosphoglycerides, Sphingolipids, And Cholesterol
Term
What is the structure and function of Phosphoglycerides?
Definition

A glycerol backbone esterbonded to two fatty acid chains and a hydrophilic head group.

Are amphipathic in character

Term
What is the structure of Sphingolipids?
Definition

Sphingosine linked to a fatty acid chain by it amino group. can have different molecules linked to the terminal alchohol to give different functions

 

Term
What is cholesterol?
Definition
molecule that makes up to 50% of plasma membranes in animals.
Term
What can lipid composition influence?
Definition
The physical state of the membrane and influence the activity of particular membrane proteins.
Term
What are the three classes of membrane proteins?
Definition

Integral Proteins

Peripheral Proteins

Lipid-anchored Proteins

 

Term
What is the structure and function of integral proteins?
Definition

Proteins embedded in the plasma membrane with a cytolic domain, a transmembrane domain and an extracellular domain and are amphipathic.

 

Act as receptor that bind certain specific substances at the membrane surface, As transporters involved in the movement of ions and solutes across the membrane, or as agents that transfer electrons during the processes of photosythesis and cellular respiration.

Term
What is the structure and function of Peripheral membrane proteins?
Definition

Proteins linked to the plasma membrane by weak electrostatic bonds.

 

On the outside provide mechanical support for the membrane and function as an anchor for integral membrane proteins.

On the inside they function as enzymes, specialized coats, or factors that transmit transmembrane signals.

Term
What are GPI-anchored proteins?
Definition
Peripheral membrane proteins that are anchored to the membrane via linkage to a glycosylphosphatidylinositol molecule of the bilayer
Term
What is membrane fluidity's significance to function??
Definition
The fluidity provides a compromise for the need of a barrier and to be able to exchange materials, move lipids and proteins,and allows for the insertion of lipids and proteins in the membrane.
Term
What are the factors that influence fluidity of the plasma membrane?
Definition
Temperature and the ratio of saturated and unsaturated fatty acids
Term
Describe the movement of lipids in the Plasma Membrane?
Definition
Since membranes are fluid they can move laterally on the same leaflet with considerable ease. Flip-floping to the other side is more restricted because they must pass through the internal hydrophobic sheet of the membrane however cells posses certain enzymes to accomplish this task. The physical state is also a key factor in how lipids move in the plasma membrane
Term
Describe the types of movement of proteins in the Plasma membrane?
Definition

Som move randomly throughout the plasma membrane.

Some are immobilized.

Some move in a particular path.

 

Term
What determines the mobility of proteins?
Definition
The membrane skeleton, proteins surronded by other proteins, and membrane barriers.
Term
What are the regional variations in plasma membranes of cells?
Definition

Protein composition and mobility

 

Term
What is diffusion?
Definition
A spontaneous process in which a substance moves from a region of higher concentration to a region of lower concentration,eventually eliminating the concentration difference between the two regions.
Term
What are the conditions that need to be met before a nonelectrolyte can diffuse passively through the plasma membrane?
Definition
The substance must be at a higher concentration on one side of the membrane and the membrane must be permeable to the substance.
Term
What properties of a solute allow it to permeate the membrane?
Definition

The solute can pass through the lipid bilayer

 The solute can traverse an aqueous pore that spans the membrane.

Term
What is osmosis?
Definition
The diffusion of water from a region of lower solute concentration to a region of higher solute concentration.
Term
What does being hypertonic mean?
Definition
Having the compartment of higher concentration
Term
What does being Hypotonic mean?
Definition
Having the compartment with Lower solute concentration.
Term
What does being isotonic mean?
Definition
The internal solute concentration equals the external solute concentration.
Term
What happens when a cell is placed in a Hypotonic solution and why does it happen?
Definition

The cell fills with water.

Because the interior of the cell has a higher concentration of solute than the outside water will rush in to try and dilute the solute inside the cell to the same as the outside.

 

Term
What happens when you place a cell into a hypertonic solution and why does that happen?
Definition

The cell loses water.

Because the outside concentration is lower than that of the cell so the water will rush out of the cell to try and equalize the concentrations.

 

Term
What happens to a cell in an isotonic solution?
Definition

The cell neither gains nor loses water.

Because solute concentration are the same so water does not need to move in or out of the cell to equalize the concentrations.

Term
How do plant cell differ from animal cells in terms of the environment they are usually in?
Definition
They are generally in a hypertonic compared to their fluid environment. Animal cells are generally isotonic.
Term
What is turgor pressure?
Definition
Pressure within a cell that is hypertonic.
Term
What is plasmolysis?
Definition

When a plant cell is placed inside a Hypertonic medium, its volume shrinks as the plasma membrane pulls away from the surronding cell wall.

This is responsible for the wilting of plants and flowers

Term
What are ion channels?
Definition
Openings in the membrane that are permeable to specific ions.
Term
The diffusion of ions through a channel is always which direction?
Definition

from a state of higher energy to one of lower energy

 

Term
What are voltage-gated channels?
Definition
Channels whose confirmational state depends on the difference in ionic charge on the two sides of the membrane.
Term
What are ligand gated channels?
Definition
Channels whose confirmational state depends on the binding of specific molecule
Term
What are mechano-gated channels?
Definition
Channels whose confirmational state depends on mechanical forces that are applied to the membrane.
Term
What is a facilitative transporter?
Definition

a membrane spaning protein that selectively binds to a substance to be brought into the cell.

Part of facilitated diffusion.

Term
What is facilitated diffusion?
Definition
Process by which the diffusion rate of a substance is increased through interaction with a substance-specific membrane protein.
Term
What is active transport?
Definition
The energy-requiring process in which a substance binds to a specific membrane protein, changing its confirmation to allow passage of the substance through the membrane against the electrochemical gradient for that substance.
Term
What is the electrochemical gradient?
Definition
The overall difference in electrical charge and in solute concentration that determines the ability of an electrolyte to diffuse between two compartments.
Term
What is Membrane Potential?
Definition
The electrical potential across a membrane
Term
What are Active transporter often referred to as?
Definition
Pumps
Term
What do Ion pumps create?
Definition
Creates electrochemical gradients and a membrane potential
Term
What are some processes in which proton pumps are important?
Definition
ATP synthesis, Lysosome function, And sugar transport in plants
Term
What is an example of a defective pump?
Definition
Cystic fibrosis
Term
What is essential for an active transporter or carrier mediated transporter to function?
Definition
The ability to experience a temporary confirmational change
Term
What is high affinity?
Definition
A high tendency to bind to certain ions even when they are present at low levels
Term
What active transporter that move ions called?
Definition
Ion pumps.
Term
What three gradients do ion pumps create?
Definition

A concentration grandient.

An electrical gradient.

in the case of H a pH gradient.

Term
What are proton pumps?
Definition
pumps that create concentration gradient of H ions
Term
What is membrane trafficking?
Definition
The movement of membrane from one component to another.
Term
What is the lumen
Definition
The interior of the organelle?
Term
What is signigicant about the lumen?
Definition
The solutes,enzymes,and reactions are different from outside the organelle because of the presence of a phospholipid bilayer.
Term
Explain the process of the formation of a vesicle?
Definition
cargo is moved to a specific part of the membrane then that part starts to bud off which breaks off and forms a vesicle
Term
What domains do integral proteins of vesicles have?
Definition
A cystosolic domain, a transmembrane domain, and a luminal domain.
Term
What defines the components of the endomembrane system?
Definition
They exchange membrane and materials.
Term
What is biosynthesis?
Definition
The bulding of molecules
Term
What molecules are built by the endomembrane system?
Definition
Lipids, some proteins, and carbohydrates
Term
What is the  secretory pathway?
Definition
When biosythesis involves material that are going to be released to function outside of the cell
Term
What are the steps of the secretory pathway?
Definition

sythesis in the ER

Processing in the Golgi

And materials shipped to the plasma membrane and released

Term
What is exocytosis?
Definition
The process of a transport vesicle fusing with the plasma membrane.
Term
What are the two forms of the Endoplasmic Reticulum?
Definition
Rough and smooth
Term
Why are the rough and smooth ER given the same name?
Definition
Because the lumen of each seem to be physically continuous.
Term
Why does the Rough ER look different then the Smooth ER?
Definition
Because the rough ER function mainly in protein synthesis so it is studded with ribosomes.
Term
Why does the smooth ER look different than the rough ER?
Definition
because it doesn't bind alot of ribosomes because most of the biosynthesis involves the lumen of the smooth ER
Term
What can vary about the organelles in cells depending on their functions?
Definition
The amount of a particular organelle and the shape
Term
What is the function of the smooth ER?
Definition

Synthesis of Phospholipids

synthesis of steroids and hormones

glucose homeostasis(human specific)

store calcium

 

Term
What is the function of the Rough ER
Definition

protein synthesis

Synthesis and attachment of carbohydrates

Some phospholipid synthesis

Term
What is an oligosaccharide?
Definition
A short polymer of monosaccharides
Term
What must you have for protein sythesis
Definition

Messenger RNA

Transfer RNA w/ amino acids

Ribosomes

Term
What are the two configurations of Ribosomes?
Definition

Floating or free in the cytosol

Or bound to the rough ER

Term
What do free ribosomes do?
Definition
Make all proteins that function in the cytosol, nucleaus, and the mitochondria.
Term
What do bound ribosomes make?
Definition

All the proteins that function in the endomembrane system (in the lumen).

Make the integral proteins of the endomembrane system

All proteins that are to be released to function outside the cell.

Term
What is the biosynthetic pathway?
Definition

Protein made in the ER

modified in the golgi

Sorted and packaged in the golgi

Shipped to endomembrane organelles

Term
How does the cell know what protein a ribosome should make?
Definition
Through messenger RNA
Term
How does all protein synthesis begin?
Definition
Begins on free ribosomes with messenger RNA, Ribosome bind to messenger RNA, Transfer RNA delivers methionine
Term
What do proteins that are meant to be made on bound ribosomes have?
Definition
 A signal sequence
Term
What is a signal sequence?
Definition
A stretch of hydrophobic amino acids That occurs at or near the amino terminus.
Term
What is SRP?
Definition
Signal Recognition Particle?
Term
What is the function of SRP?
Definition

The SRP will bind to the Signal sequence, this puts it in a confirmation to bind to the ribosome that stops the synthesis of proteins.

This tells the ribosome it needs to be on the ER

Term
What is the SRP receptor?
Definition
An integral protein of the ER That binds to the SRP
Term
What is a translocon?
Definition
A gated channel in the ER that in its natural state the channel is block but when SRP binds to the receptor it situates the ribosome ontop of the translocon the SRP goes away,the gate opens and protein synthesis continues and the protein is released into the lumen of the ER
Term
When are the two subunits of the ribosome together?
Definition
Only in the presence of messenger RNA and protein synthesis and is actively ongoing
Term
How are integral proteins made?
Definition
At the time of synthesis the transmembrane domain is established
Term
How do you increase the size of a cell?
Definition
Insert Phospholipids in the bilayer
Term
What is outside the plasma membrane?
Definition
The Lumen of the endomembrane system
Term
How can the phospholipid composition differ From the site of synthesis to the destination?
Definition

When a vesicle leaves the ER the bilayer is already similar to the plasma membrane.

Enzymes in the cytosol switch head groups.

proteins shuttle head groups

Term
Is the vesicle that leaves an organelle different or the same as the organelle in membrane composition?
Definition
Different
Term
What is glycosilation?
Definition
The synthesis and attachment of oligosaccharides.
Term
What are oligosaccharides in the golgi attachted to?
Definition
hydroxyl groups of threonine
Term
What are oligosaccharides in the ER attachted to?
Definition
asparagine
Term
What are Chapperone proteins?
Definition
Proteins that facilitate appropriate folding of proteins
Term
What happens to proteins that are folded wrong?
Definition
They are immediately identified and destroyed then replaced by a functional protein
Term
Where is everything made in the ER going to be shipped and why?
Definition

The Golgi

because everything that comes out of the ER needs to be modified and polished in order to do work,

The molecules made in the ER are not functional yet,

They become functional after modifications by the golgi

Term
Where are derrivatives of the naturally occuring amino acids made?
Definition
Only in the Golgi
Term
What is signigicant about N-linked sugars?
Definition
They are all Identical
Term
Where does the golgi add carbohydrates?
Definition
To serine or threonine
Term
What is GAG synthesis?
Definition

Glycose amino Glycans

Complex polysaccharides that are deposited outside the plasma membrane

Term
What is the golgi comprised of ?
Definition

Physicall seperated compartments called Stacks.

The cis golgi

 

Term
What is the cisternae of the golgi?
Definition
The internal compartments of the golgi
Term
What is significant about the seperation of cisternae?
Definition
They need to be seperated because each cisternae have different enzymes for different jobs
Term
What is the Cis golgi network?
Definition
The end of the golgi that recieves all the products
Term
What is the trans golgi compartment?
Definition
The end of the golgi that sends out the materials
Term
What is the medial golgi compartment?
Definition
The compartment inbetween the cis and trans golgi compartment
Term
Where do vesicles from the golgi get sent to ?
Definition

Back to the ER containing proteins that function in the ER

To the plasma membrane containing proteins that function that will function as part of the plasma membrane or proteins to be secrete

to The lysosomes containg proteins to function in the lysosome

Term
What is signigicant about the shipment of vesicles in the golgi?
Definition
Everything is sorted and the path is set to where that vesicle is going
Term
What coat proteins?
Definition
Cytosolic proteins responsible for selecting the cargo, packaging the cargo, and the delivery of the cargo to it location
Term
What are unique about coat proteins?
Definition
They are unique for the organelle to which they are selecting, packing and shipping cargo to
Term
Why is the plasma membrane apart of the endomembrane system?
Definition
Because membrane and materials get transported from the components of the endomembrane system to the plasma membrane
Term

Where does all protein sythesis begin?

 

Definition
The cytosol
Term
What is the default location of vesicles leaving the golgi?
Definition
The plasma membrane
Term
What are the functions of the integral proteins of transport vesicles?
Definition
The luminal domain will sort the molecules and the cytosolic domain will bind with coat proteins which will cluster the integral proteins into one spot and package them into a single vesicle then carry the vesicle to its final location
Term
What is the function of the Lysosome?
Definition
To be digestive organelles?
Term
What are hydrolayses?
Definition
Enzymes that catalyze hydrolysis reactions. present in lysosomes
Term
What are acid hydrolayses?
Definition
Enzymes in the lysosome that function at a pH of 4.6
Term
Why is the pH of the lysosome different from that of the cytosol?
Definition
because the enzymes in a lysosome only function well at pH 4.6 and don't function well at pH 7 so that is a lysosome were to leak the cell would not be compromised
Term
What is apotosys?
Definition
The self destruction of the cell via lysosomes
Term
Why do cells need a destructive organelle?
Definition

Damged organelles need to be recycled(autophagy)

to breakdown food brought in and

to defend against foreign cells by eating the cell(phagocytosis)

 

 

Term
What is endocytosis?
Definition
The uptake of specific solute by the cell
Term
Why do cells need endocytosis?
Definition

For food

 

Term
What happens in the bulk phase of endocytosis?
Definition
phase were lots of membrane is brought into the cell to prevent the cell from getting to big and to recycle membrane
Term
What happens in receptor mediated endocytosis?
Definition
The receptors on the outside of the plasma membrane bind to specific molecules then they group together then they bud off and come into the cytosol
Term
What are signaling receptors?
Definition
Receptor brought in by receptor mediated endocytosis that when binded to a molecule it  signals a change then it is brought into the cell cutting of the signal then it is sent to the lysosome to be digested
Term

What are housekeeping receptors?

Are they digested by the lysosome?

Definition
Receptors that are needed all the time to bring in essential supplies. these receptors are not digested and are sent back to the plasma membrane
Term
What is phagocytosis?
Definition
the uptake of whole cells or large food molecules
Term
Why do cells need receptor mediated endocytosis?
Definition
For information and nutrients
Term
What are the functions of the cytoskeleton?
Definition

structure and support of the cell

intercellular transport

movement of the cell

spacial organization

 

Term

What are microtubles?

 

Definition

Protein of the cytoskeleton

composed of alpha and beta tubulin

Term
What are microfilaments?
Definition
protein of the cytoskeleton made from the protein actin
Term
What are intermediate filaments?
Definition

cytoskeletal protein found in few organisms

built from different proteins in different cells

Term
What is the function of microtubles?
Definition

provide the path for the movement of vesicles

structure and organization of organelles

intracellular transport

component of mitotic spindle

component of cillia and flagella

Term
What are the characteristics of microtubles?
Definition

the fattests of the components of the cytoskeletal

look like tubes or pipes

walls assembled alpha(-) beta(+) alpha beta etc.

one row is a protofilament

13 protofilaments make 1 microtuble

have dynamic stability

has polarity alpha end is negatibe

beta is positive

 

Term

What are the two molecular motors for microtubles?

 What direction do they move?

Definition
kinesin(beta+) and dyanine(alpha-)
Term
What is the common characteristic of motor proteins?
Definition

they have the ability to hydrolize ATP

 

Term
How do motor proteins move?
Definition
Has two ends the microtuble binding end and the vesicle binding end. the microtuble binding end goes through a change in confirmation via ATP then releases the Phosphate changing back to the original confirmation which makes it walk down the microtuble.
Term
What is the centrasome?
Definition
A microtuble organizing center
Term
How do microtuble grow out of the centrosome?
Definition
They always grow out of the centrasome with the positive end facing out
Term
What are microtuble organizing centers?
Definition
Structure from which microtubles grow?
Term
What are basal bodies?
Definition
Microtuble organizing center for cilia and flagella
Term
What are the characteristics of microfilaments?
Definition
long flexible rope like fibers built by the protein actin
Term
What are the functions of microfilaments?
Definition

Cell migration

muscle contraction

cytokinesis

cytoplasmic streaming

Term
What are the motor proteins for the microfilaments?
Definition
Myosins
Term
How do actin and myosin facilitate movement?
Definition
mysoin breaks ATP which causes a confirmational change which slides the actin filaments closer together
Term
What membrane protections do bacteria cells have?
Definition

cell walls made of peptidoglycan

and a capsule

Term
What membrane protections do plants have?
Definition
cell walls made of cellulose
Term
What membrane protections do animal cells have?
Definition
the extracellular matrix of collagen
Term
What is the significance of the extracellular matrix
Definition

the structure between the animal cell and the outside world

involved in cell to cell interaction

involved in cells receiving information

it is the gateway for the cell and all its interactions

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