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The Cell
The cell, proteins, carbs, and lipids
92
Biology
Undergraduate 2
01/19/2011

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Term
Eukaryotic
Definition
A member of the domain Eukarya; an organism cells contain a nucleus, numerous membrane-bound organelles, and an extensive cytoskeleton. May be unicellular or multicellular.
Term
Cytoskeleton
Definition

 Stabilizing structure, which provides rigidity and flexibility; made-up of protein fibers; they are dynamic; enables a cell to change shape quickly

Term

prokaryote

Definition
A member of the domain Bacteria or Archaea; a unicellular organism lacking a nucleus and containing relatively few organelles or cytoskeletal components
Term
cytosol
Definition
The fluid portion of the cytoplasm
Term
nucleus
Definition
(1) The center of an atom, containing protons and neutrons. (2) in eukaryotic cells, the large organelle containing the chromosomes and surrounded by a double membrane. (3) A discrete clump of neutron cell bodies in the brain, usually sharing a distinct function.
Term
chromosome
Definition
Gene-carrying structure of a single long molecule of DNA and associated proteins. Most prokaryotic cells contain a single, circular chromosome; eukaryotic cells contain multiple noncircular (linear) chromosomes located in the nucleus
Term
plasmid
Definition
A small, usually circular, supercoiled DNA molecule independent of the cell's main chromosome(s) in prokaryotes and some eukaryotes.
Term
mitochondrion
Definition
A eukaryotic organelle that is bounded by a double membrane and is the site of aerobic respiration.
Term
chloroplast
Definition
A chlorophyll-containing organelle, bounded by a double membrane, in which photosynthesis occurs; found in plants and photosynthetic protists. Also the location of amino acid, fatty acid purine, and pyrimidine synthesis
Term
endomembrane system
Definition
A system of organelles in eukaryotic cells that performs most protein and lipid syntesis. Includes the endoplasmic reticulum (ER), Golgi apparatus, and lysosomes.
Term
endoplasmic reticulum
Definition
A network of interconnected membranous sacs and tubules found inside eukaryotic cells. 
Term
Golgi apparatus
Definition
A eukaryotic organelle, consisting of stacks of flattened membranous sacs (cisternae) that functions in processing and sorting proteins and lipids destined to be secreted or directed to other organelles
Term
lysosome
Definition
A small organelle in an animal cell containing acids and enzymes that catalyze hydrolysis reactions and can digest large molecules
Term
cytoskeleton
Definition
In eukaryotic cells, a network of protein fibers in the cytoplasm that are involved in cell shape, support, locomotion, and transport of materials within the cell. Prokaryotic cells have a similar but much less extensive network of fibers
Term
macromolecule
Definition
Any very large organic molecule, usually made up of smaller molecules proteins, nucleic acids, and polysaccharides
Term
protein
Definition
A macromolecule consisting of one or more polypeptide chains composed of 50 or more amino acids linked together. Each protein has a unique sequence of amino acids and, in its native state, a characteristic three-dimensional shape
Term
monomer
Definition
A small molecule that can covalently bind to other similar molecules to form a larger macromolecule
Term
polymer
Definition
Any long molecule composed of small repeating units (monomers) bonded together. The main biological polymers are proteins, nucleic acids, and polysaccharides.
Term
amino acid
Definition
A small organic molecule with a central carbon atom bonded to an amino group (-NH_2, a carboxyl group -COOH), a hydrogen atom, and a side group. Protein are polymers of 20 common amino acids.
Term
peptide bond
Definition
The covalent bond (C-N) formed by a condensation reaction between between two amino acids; links the residue in peptides and proteins
Term
polypeptide
Definition
A chain of 50 or more amino acids linked together by peptide bonds
Term
primary structure
Definition
The sequence of amino acids in a peptide or protein; also the sequence of nucleotides in a nucleic acid
Term
secondary structure
Definition
In proteins, localized folding of a polypeptide chain into regular structures stabilized by hydrogen bonding between atoms of the backbone. In nucleic acids, elements of structure stabilized by hydrogen bonding and other interactions between complementary bases.
Term
quaternary structure
Definition
The overall three-dimensional shape of a protein containing two or more polypeptide chains (subunits); determined by the number, relative position, and interactions of the subunits.
Term

α-helix

 

Definition
A protein secondary structure in which the polypeptide backbone coils into a spirals shape stabilized by hydrogen bonds between atoms
Term
beta-sheet
Definition
A protein secondary structure in which the polypeptide backbone coils into a spiral shape stabilized by hydrogen bonds between atoms.
Term
hydrophobic interactions
Definition
Not interacting readily with water. Hydrophobic compounds are typically nonpolar compounds that lack charged or electronegative atoms and often contain many C-C and C-H bonds.
Term
denature
Definition
For a macromolecule, loss of its three-dimensional structure and biological activity due to breakage of hydrogen bonds and disulfide bonds, usually caused by treatment with excess heat or extreme pH conditions.
Term
molecular chaperone
Definition
A protein that facilitates the three-dimensional folding of newly synthesized proteins, usually by an ATP-dependent mechanism. 
Term
enzyme
Definition
A protein catalyst used by living organisms to speed up and control biological reactions.
Term
endergonic 
Definition
Referring to a chemical reaction that requires an input of energy to occur and for which the Gibbs free-energy change is 0
Term
exergonic
Definition
Referring to a chemical reaction that can occur spontaneously, releasing heat and/or increasing entropy, and for which the Gibbs free-energy change is 0
Term
activation energy
Definition
The amount of energy required to initiate a chemical; specially, the energy required to reach the transition state
Term
catalyst
Definition
Any substance that increases the rate of a chemical of a chemical reaction without itself undergoing any permanent chemical change.
Term
coenzyme/cofactor
Definition
A small organic molecule that is a required cofactor for an enzyme-catalyzed reaction. Often donation or receives electrons or functional groups during the reaction.
Term
inhibitor
Definition
In ecological succession, the phenomenon in which early-arriving species make conditions less favorable for the establishment of certain later-arriving species. 
Term
competitive inhibitor
Definition
Inhibition of an enzyme's ability to catalyze a chemical reaction via a nonreactant molecule that competes with the substrate(s) for access to the active site.
Term
allosteric inhibitor (regulation)
Definition
Regulation of a protein's function by binding of a regulatory molecule, usually to a specific site distinct from the active site, causing a change in the protein's shape.
Term
carbohydrate
Definition
Any of a class of molecules that contain a carbonyl group, several hydroxyl groups, and several to many carbon-hydrogen bonds.
Term
monosaccharide
Definition
A small carbohydrate, such as glucose, that has the molecular formula (CH2O)n, and cannot be hydrolyzed to form any smaller carbohydrates. Also called simple sugar
Term
disaccharide
Definition
A carbohydrate consisting of two monosaccharides (sugar residues) linked together.
Term
polysaccharide
Definition
A linear or branched polymer consisting of many monosaccharides joined by glycosidic linkages. Carbohydrate polymers with relatively few residues often are called oligosaccharides. 
Term
glycosidic linkage
Definition
The covalent bond formed by a condensation reaction between two sugar monomers; joins the residue of a polysaccharides.
Term
starch
Definition
A mixture of two storage polysaccharides, amylose and amylopectin, both formed from A-glucose monomers. Amylopectin is branched, and amylose is unbranced. The major form of stored carbohydrate in plants.
Term
amylase
Definition
Any enzyme that can break down starch by catalyzing hydrolysis of the glycosidic linkages between the glucose residue.
Term
glycogen
Definition
A highly branched storage polysaccharide composed of A-glucose monomers joined by 1,4-and 1,6-glycosidic linkages. The major form of stored carbohydrate in animals.
Term
cellulose
Definition
The most common form of photosynthesis in which atmospheric CO2 is used to from 3-phosphoglycerate, a three-carbon sugar
Term
chitin
Definition
A structural polysaccharide composed of N-acetylgolucosamine monomers joined end to end by B-1,4-glycosidic linkages. Found in cell walls of fungi and many algae, and in external skeletons of insects and crustaceans.
Term
lipid
Definition
Any organic substance that does not dissolve in water, but dissolves well in nonpolar organic solvents. Lipids include fats, oils, phospholipids, and waxes.
Term
fatty acid
Definition
A lipid consisting of a hydrocarbon chain bonded to a carboxyl group (-COOH) at one end. Used by many organisms to store chemical energy 
Term
saturated
Definition
Referring to fats and fatty acids in which all the carbon-carbon bonds are single bonds. Such fats have relatively high melting points.
Term
unsaturated
Definition
Referring to fats and fatty acids in which at least one carbon-carbon bond is a double bond. Double bonds produce kinks in the fatty acid chains and decreases the compound's melting point
Term
fat (triglyceride)
Definition
A lipid consisting of three fatty acid molecules joined by ester linkages to a glycerol molecule
Term
phospholipid
Definition
A class of lipid having a hydrophilic head (a phosphate group) and a hydrophobic tail (one or more fatty acids). Major components of the plasma membrane and organelle membranes.
Term
amphipathic
Definition
Containing hydrophilic and hydrophobic elements.
Term
steroid
Definition
A class of lipid with a characteristic four-ring structure
Term
lipid bilayer
Definition
The basic structure element of all cellular membranes consisting of a two-layer sheet of phospholipid molecules whose hydrophobic tails are oriented toward the inside and hydrophilic heads, toward the outside.
Term
diffusion
Definition
Spontaneous movement of a substance from a region of high concentration to one of low concentration
Term
concentration gradient
Definition
Difference across space (e.g. across a membrane) in the concentration of a dissolved substance.
Term
membrane potential
Definition
A difference in electric charge across a cell membrane; a form of potential energy. Also called membrane voltage.
Term
electrochemical gradient
Definition
The combined effect of an ion's concentration gradient and electrical (charge) gradient across a membrane that affects the diffusion of ions across the membrane
Term
permeability
Definition
The tendency of a structure, such as a membrane, to allow a given substance to diffuse across it.
Term
selective permeability
Definition
The property of a membrane that allows some substances to diffuse across it much more readily  than other substances
Term
osmosis
Definition
Diffusion of water across a selectively permeable membrane from a region of high water concentration (low solute concentration) to a region of low water concentration (high solute concentration) 
Term
hypertonic
Definition
Comparative term designating a solution that has a greater solute concentration, and therefore a lower water concentration, than another solution.
Term
isotonic
Definition
Comparative term designating a solution that has the same solute concentration and water concentration than another solution
Term
hypotonic
Definition
Term
integral membrane protein
Definition
Term
transmembrane protein
Definition
Term
peripheral membrane protein
Definition
Term
membrane transport protein
Definition
Term
passive transport
Definition
Term
facilitated diffusion
Definition
Term
channel protein
Definition
Term
carrier protein
Definition
Term
active transport
Definition
Term
transporter
Definition
Term
pump
Definition
Term
hormone
Definition
Term
receptor
Definition
Term
intracellular receptor
Definition
Term
membrane receptor 
Definition
Term
respiration
Definition
Term
oxidation-reduction reaction (redox)
Definition
Term
electron carrier
Definition
Term
NAD+/NADH
Definition
Term
ATP
Definition
Term
glycolysis
Definition
Term
Krebs cycle
Definition
Term
electron transport
Definition
Term
electron transport chain
Definition
Term
tertiary structure
Definition
The overall three-dimensional shape of a single polypeptide chain, resulting from multiple interactions among the amino acid side chains and the peptide backbone
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