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Term 1, Biochem Lect #29
The Pyruvate DH Complex
51
Medical
Graduate
09/21/2009

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Term
The name, location and role of pyruvate's carrier protein.
Definition
Pyruvate Translocase is a symporterin the inner mitochondrial membrane. It fxns to transport 1 pyruvate molecule and H+ ion into the mitochondrial matrix
Term
PKU results from an accumulation of this molecule
Definition
This disorder results from an accumulation from Phenylpyruvate
Term
Phenylypyruvate is an inhibitor of this molecule
Definition
It is an inhibitor of Pyruvate Translocase
Term
Consequences of PKU
Definition
no pyrvate transported into mitochondrial matrix --> Insufficient levels of acetyl-CoA --> deficiency in ATP --> mental retardation
Term
Two inhibitors of Pyruvate translocase
Definition
Phenylpyruvate and α-ketoisocaproate
Term
Cause of Maple Syrup Urine Disease
Definition
Defect in metabolism of branched-chained amino acids
Term
Typical concentration range of Phenylpyruvate in the blood of children suffering from PKU
Definition
[0.1 - 0.5mM]
Term
Typical concentration range of branched chain AAs of children w/ Maple Syrup Urine Disease
Definition
(2 - 4mM)
Term
The Pyruvate DH complex catalyzes this rxn
Definition

It oxidizes pyruvate to acetyl-CoA:


pyruvate + NAD+ + CoA-SH --> acetly-CoA + CO2 + NADH + H+

 

 

Term
Two characteristics of the rxn catalyzed by the Pyruvate DH complex
Definition

The rxn catalyzed is:

1. an oxidative decarboxylation

2. irreversible

Term
Three important subunts of the Pyruvate DH Complex
Definition

Three important subunits f this complex are:

E1 - The PDH component

E2 - The Dihydrolipoyl Transacetylase component

E3 - The Dihydrolipoyl DH component

Term
The prosthetic group on the Pyruvate DH comonent (E1)
Definition
Thiamine Pyrophosphatase (TPP)
Term
Source of mammalian thiamine
Definition
Dietary Vitamin B1 is used to synthesize this molecule in mammals
Term
Fxn of the Pyruvate DH component (E1)
Definition
This part of the complex oxidatively decarboxylates pyruvate to the enzyme-bound hydroxyethyl group
Term
Fxn of Dihydolipoyl Transacetylase (E2)
Definition

It-

1) oxidatively decarboxylates the enzyme-bound

hydroxyethyl group to acetate

 

2) transfers the acetyl group to CoE-A

Term
Dihydolipoyl Transacetylase (E2) uses this molecule as a prothetic group
Definition
This subunit of the PDH complex uses lipoic acid as a prothetic group
Term
In E2 of the PDH complex, lipoic acid is covantly connected to this amino acid to form this molcule
Definition
It forms an amide bond with lysine to form lipoamide
Term
General fxn of the lipoamide arm in E2 of the PDH complex
Definition
It enables the transfer of molecules beween active sites of subunits
Term
Fxn of Dihydrolipoyl DH (E3)
Definition
This subunit catalyzes the re-oxidation of lipoamide through the reduction of NAD+
Term
The prosthetic group of Dihydrolipoyl DH (E3)
Definition
Its prosthetic group is FAD
Term
Two molecular features of the PDH component (E1)
Definition
It is a 30 subunit complex, each with a TPP group  attached to it
Term
Two molecular features of the Dihydrolipoyl Transacetylase component (E2)
Definition
It is composed of 60 polypeptide chains, each with a lipoic acid prosthetic group
Term
Two molecular features of the Dihydrolipoyl Dehydrogenase component (E3)
Definition
It consists of 6 identical dimers, each with a FAD prosthetic group
Term
Two general mechanisms to control the PDH complex
Definition

1. Product inhibition

2. Phosphorylation

Term
These products inhibit the PDH COmplex
Definition
NADH and Acetyl-CoA inhibit this enzyme
Term
Location and Roles of PDH Kinase and Phosphatase
Definition
Bound to the PDH complex, they activate (dephosphorylate) and inhibit (phosphorylate) the complex
Term
Number of phosphorylation sites and and the amino acid responsible for providing the site
Definition
There are 60 phosphorylation sites in the PDH complex and they ar provided by serine
Term
Positive allosteric effectors of PDH kinase
Definition
High levels of ATP, NADH and Acety-Coa are positive allosteric effectors  of this enzyme
Term
PDH kinase can also be controlled by looking atthese two ratios
Definition
The ratios of NADH/NAD+and Acetyl-CoA/CoA-SH ratios
Term
Pyruvate DH Phosphatase requires these two metals for activity
Definition
The enzyme requires Mg2+ and Ca2+
Term
Role of ATP and citrate in Pyruvate DH Phosphatase activity
Definition
ATP and citrate can chelate Mg2+ and Ca2+, thus deactivating Pyruvate DH Phosphatase, keeping the PDH complex deactivated/phosphorylated and preventing pyruvate from entering the TCA cycle
Term
Mechanism by which PDH complex activity is stimulated in adipose tissue
Definition
Insulin stimulates PDH phosphorylase activity which activates PDH complex in this tissue
Term
Mechanism by which PDH complex activity is stimulated in cardiac tissue
Definition
Catecholamines activates PDH complex in this tissue
Term
Two metalloid compounds that are inhibitors of the PDH complex
Definition
Mercury and Arenite are inhibitors
Term
Mechanism by which mercury and Arsenite inhibit the PDH complex
Definition
These metalloid compounds react with the reduced lipoamide of Dihydrolipoyl Transacetylase (E2) preventing it from reacting with TPP from E1
Term
Removing the inhibiting metalloid molecules (mercury and Arsenite) from E2 of the PDH complex can be done through this agent
Definition
BAL (2,3-dimercaptopropanol competes with lipoamide for these inhibitor
Term
The fate of the inhibitor/BAL complex
Definition
It is excreted in the urine
Term
The fxnal groupd of BAL (2,3-dimercaptopropanol)
Definition
This agent has sulfydral groups
Term
Cause of Beri-beri disease
Definition
Its cause is a deficiency in thiamine
Term
Symptoms of Dry Beri-beri disease
Definition
Symptoms are abnormal sensation in the limbs, possibly leading to paralysis and muscle atrophy
Term
Symptoms of Wet Beri-beri disease
Definition
CHF with edema are its symptoms due to defective PDH complex
Term
Sx and causes of Wernicke's Encephalopathy
Definition
Sx are neurologocal manifestations (i.e. acute mental disturbances, occular paralysis) and cardiac failure
Term

Three enzymes that use thymine as a prosthetic group

Definition
  1. PDH Complex
  2. α-ketoglutarate DH (TCA cycle)
  3. Transketolase (Pentose Phosphate Pathway)

all use this dietary molecule as a prosthetic group.

Term
Defects in the PDH complex can lead to elevated blood levels of these molecules
Definition
Pyruvate, Lactate, Alanine and α-ketoglutarate are elevated in the blood when this enzyme is defective
Term
Leigh's Disease is a severe form of this condition
Definition
severe Lactic acidosis is called this
Term
This amino acid is a pre-cursor to pyruvate
Definition
Alanine is a pre-cursor to this glycolytic product
Term
The Pyruvate DH Complex and α-ketoglutarate DH catalyze this general type of rxn
Definition
They catalyze oxidative decarboxylations
Term
An X-linked dominant PDH deficiency causes a defect in this subunit
Definition
It causes a defect in the α-subunit of Pyruvate DH component (E1)
Term
Dietary intervention for PDH deficiency
Definition
A ketogenic diet, low carbs & high fats
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