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Respiratory Viruses
Lectura #3 on Inhaled Viruses
92
Biology
12th Grade
07/14/2008

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Term
"the easy way in"
Definition
respiratory tract
Term
Three types of influenza
Definition
Influenza A, B, and C
Term
most dangerous type of influenza
Definition
Influenza A
Term

The "key" influenza uses to unlock the cell.

Definition
hemagglutinin
Term
how many genes does influenza have?
Definition
8
Term

the "key" to the cell of influenza

Definition
hemmaglutinin
Term
how many proteins are there on the surface of the average virus?
Definition
500
Term
how did hemaglutinin get its name?
Definition

literally "blood agglutination"

 

(blood clumping)

 

this is because hemagglutinin can bind to multiple cell's receptors causing clumping

Term

what strategy for cellular entry does influenza use?

(it's strategy 1)

Definition

it's called receptor mediated endocytosis

 

(the whole virus is absorbed into the cell)

Term
how does the virus get into the cell in receptor mediated endocytosis?
Definition
It binds to the receptors on the cell's surface, and then is absorbed into the cell (endocytosed). It is enclosed in a pocket of the cell's membrane (endosome)
Term
endosome
Definition
the pocket of cell membrane a virus is enclosed in when it first enters the cell during receptor mediated endocytosis
Term

how does a virus get its genome out of the endosome?

Definition
normal cell membranes contain "pumps" which usually pump protons out of the cell. However, the endosome has the membrane reversed, and the result is that protons are pumped into the endosome. this creates a lower acidic pH, and once the pH hits around 5, the virus's membrane and the cell membrane fuse into one, releaseing the DNA.
Term

psitive strand viral RNA

 

(in single stranded RNA viruses)

Definition

RNA is ready to translate into proteins inmediatemente

Term

Negative strand RNA

 

single stranded RNA viruses

Definition

The complement copy of the RNA

 

First make the real RNA, then make the proteins.

Term
Influenza- possitive or negative strand?
Definition
negative
Term

what is different about viruses and polymerase?

 

Definition

polymerase is the stuff that replicates the RNA.

 

For possitive strand RNA, they have the encoding for the polymerase, so once protein production takes place the polymerase will follow.

 

In negative strand RNA, the virus has to make that second RNA  strand, so it actually has to carry polymerase with it.

Term
viruses and mRNA
Definition

viruses  rip apart the cell's mRNA and use the snippts to get the production of viral mRNA under way.

 

They contain a "cap" that gets ribosomes working on cellular (or, now, viral) proteins. Once viruses hijack these, the cell can't produce any more protein for itself and it dies (cytolitic viruses)

Term
polymerase
Definition

the blob that creates a new strand of DNA or RNA  based off another DNA or RNA template.

Term
what is the virus's "escape problem?"
Definition
Newly minted viruses have hemaglutinin on their protein coats, which is great for trying to get into a cell, but when trying to get out of the cell, the virus "sticks" to its mother infectee. Also, viruses can get stuck together through hemmaglutinin binding too. The solution? Neuraminidase! That's the razor that viruses use to shave off siliac acid from cell membranes, making it less sticky
Term
Neuraminidase
Definition
The razor used to shave off siliac acid from infected cell membranes. The "escape sword."
Term
What's an advantage of carrying your own polymerase?
Definition
You can infect non-proliferating cells.
Term
Why do we cough?
Definition
Because of the inflammation that triggers the cough reflex. Inflammation is caused by the killing of healthy repiratory cells, whether by the virus or the immune system's own response.
Term
how many influenza virus's does it take to start an infection?
Definition
10
Term
strain A of flu infects.....
Definition
birds, pigs, seals, horses, ferrets........ the list goes on.
Term
strains B and C of influenza infect.....
Definition
mostly just humans.
Term
why does flu make a lot of interferon alarm bells go off?
Definition
Influenza leaves a lot of double-stranded RNA lieing around in the nucleus of an infected cell, and it has a shady looking lipid envelope.
Term
 PKR?
Definition

Protein Kinase

 

 This is the stuff that cells start pumping out after they get an interferon warning. PKR then floats around, and if it finds double stranded RNA (that's replicating viral RNA) then it binds to it, goes on high alert, and starts throwing phosphate molecules onto it.

 

Basically it becomes a waring system for double stranded (replicating viral) RNA.

Term
how does PKR kill both cell and virus?
Definition

PKR targets a cellular protein called eIF2. eIF2 is needed to start the manufacturing of proteins, and when it is shut down, no more proteins can be produced. The result? Niether the cell nor the hopeful virus can reproduce, and both are killed.

Term
NS1
Definition
the viral protein that binds to double stranded RNa and prevents PKR from activating.
Term
how does influenza stop PKR from totally shutting down its infection?
Definition
It produces NS1 which binds to its double stranded RNA. Te NS1 produced PKR from functioning at maximum capactiy, to the virus can stay just one step ahead of the immune response.
Term
antibodies and the flu.
Definition
Antibodies can't prevent a flu virus from entering a cell, they just tag it for destruction. However, if a virus enters a cell with some antibodies still clinging on, the antibodies can then interfer with viral reproduction.
Term
Most important player in the immune response during the first flu season:
Definition

killer T cells

 

destroying infected cells and the virus within.

Term
Most important player in the immune response during flu season 2:
Definition
B cells and the antibodies they produce.
Term
acute infections.
Definition
infections like the flu. They can't go into relapsed or chronic states
Term
antigenic drift
Definition
when people are immune to older, outdated forms of the flu, but provide valuable targets for newer mutated flu strains.
Term
where did all types of flu A come from?
Definition

Ducks

 

and other waterfowl.

Term
the "missing link" between bird flues and human flues.
Definition

pigs

 

Pigs can get both human and bird flues, and then they mix up inside the pig, creating new and drastically different strains.

 

 

Term
antigenic shift
Definition

drastic changes to a virus's genome.

 

like in pigs.

Term
the cause of flu symptoms
Definition

the interferon immune response.

 

influenza activates a crap load of interferon, causing the fever, aches and fatigue.

Term
why does flu lead to pnemonia and the like?
Definition
flu kills resting and reproducing epithelial cells. These destroyed cells are eventually replaced, but there is an interval in which the repiratory track is highly vulnerable to infection. Diseases like pnemonia find it all to easy to set up shop.
Term
rhinovirus
Definition
the common cold virus.
Term
rhinovirus genome type
Definition
possitive, single stranded RNA.
Term
polyproteins.
Definition
A single long strand of nucleotides which breaks itself up into smaller strands, forming multiple proteins out of a single chain.
Term
rhinovirus genome replication
Definition
first the viral polymersase has to make complementary copies, and then it makes the actual, possitive copies (vRNA)
Term
vRNA
Definition

the possitive copies of viral genomes

 

(like in rhinoviruses)

Term
cRNA
Definition
the complementary copies of viral RNA
Term
influenza replicates in the
Definition
nucleus
Term
rhinoviruses (and most other human viruses) replicate in the
Definition
cytoplasm.
Term
capsid
Definition
a virus's protein shell.
Term

influenza buds.

 

rhinoviruses.....

Definition
burst
Term

influenza hijacks caps.

 

rhinoviruses.......

Definition

instead carry their own, coded form of a cap.

 

but in addition they also encode for a protein that disrupts the production of cellular caps. The result is the same as that with flue. The cell can't produce and mRNA, and the cell eventually starves.

Term
rhinovirus reproduction is............ hour long.
Definition
8
Term
the structure of a rhinovirus's capsid makes it so that it prefers.....
Definition
cooler temperatures. around 91 degrees. Therefore it won't go to the steamy lungs, but only to the nose and upper respiratory tract.
Term
Influenza's envelope makes it so that........
Definition
it prefers warmer areas, 98 degrees, around the lungs.
Term
Which "river" does influenza take?
Definition

the lower tract. It has to back paddle against the current that brings mucous up from the lungs toward the throat to be swallowed.

Term
Which "river" do rhinoviruses take?
Definition
the "down" river. They have to swim against the current that sweeps mucous down from the nose towards the throat.
Term
why don't rhinoviruses set off as much interferon as flu?
Definition

it interferes with the system that looses the interferon from the cell.

 

Because the virus does't set off much interferon, it has not developed any clever strategies for avoiding interferon.

Term
the _____ immune system cleans up a rhinovirus infection
Definition
innate
Term
the ______ immune system cleans up a flue infection
Definition
adaptive.
Term
why can a rhinovirus infect the same host over and over and over again?
Definition

Because the innate immune system handles rhinovirus infections, the struggle is long over before the adaptive immune system can kick in and produce antibodies. The result? The immune system won't recognize the virus when it hits again and the common cold can reinfect the same host.

Term
why does the rhinovirus want to keep you relatively fit?
Definition
Because if you're too sick you will stay at home, instead of going to school and sneezing a little bit and infecting other students.
Term
why is the rhinovirus the world's most poplular virus?
Definition

Because it can reinfect people over and over again, and because of slight antigenic drifts.

 

However there are no antigenic shifts because humans are its only resevoires.

Term
why are sinus aches part of the common cold?
Definition
because the sneezing a rhinovirus and the immune response causes some of the virus to shoot up into the sinusses, where it causes ear infections and sinus aches.
Term
why are they called "rhino viruses"
Definition

for the Greek word rhinos, or nose.

 

 during the innate immune response, the immune system targets the capilarry filled surface areas of the upper respiratory tract. They rupture, causing swelling and halting viral spread. This inflammation causes the runny nose and can constrict the mucous filled airways.

Term
why do rhinoviruses produce fever?
Definition
Because macrophages produce interleukin 1. This little guy raises the temperature past where a rhinovirus can stand (remember, they like temps around 91 degrees).
Term
why are rhinoviruses so much milder than influenza?
Definition

1. They don't activate much interferon, so there's less of an explosive reaction from the immune system.

 

2. Rhinoviruses like cooler temps, so they don't go for the deep tissues in the lungs, just the higher up, respiratatory tract.

Term
Measles comes in through_____ and affects_____
Definition

the respiratory tract

 

the whole body.

Term
rhinitis
Definition
runny nose
Term
the measles genome is.....
Definition
a single stranded negative piece of RNA
Term
measle's entry strategy is....
Definition

to leave its coat at the door.

 

the virus fuses with the cell membrane and injects its genome into the cytoplasm.

Term
measle replication takes place in the ....
Definition
cytoplasm
Term
measles replicates by...
Definition

making short segments of RNA, which encode for seperate proteins each.

 

when it comes time to assembling new genomes for the baby viruses, some of the extra, new viral proteins drift over to the mother genome, and mask the RNA bits that signal for stopping and starting the short RNA segments. The result? A new, full, single strand of RNA complement of mama's RNA. Now just go over it again and you have the original, negative strand of RNA.

Term

measles: bud or burst?

Definition

bud

Term

CD46

Definition
the suspected cellular receptor for measles. Although we're still not sure if it is, it would make sense because CD46 if found in the membranes of most cells in the body.
Term

"silent" measles

Definition
the innate immune system does a pretty good job at keeping a measles infection at bay for the first ten days. As a result, you probably won't know you have measles until ten days later.
Term
when influenza infects a dendritic cell (butler cells) ....
Definition

it doesn't reproduce hardly at all.

Term
when measles infect dendritic (butler) cells....
Definition
measles starts proliferating like wild fire.
Term
why does measles infect the dendritic cells?
Definition

because it can't wait for the butler to flee to the lymph nodes, where it readily infects the activated and hungry macrophages.

 

Once the macrophages are infected, the virus is then carried throughout the entire blood stream, where it can infect more CD46 cells, especially epithelial cells. The virus then has it made throughout the entire body.

Term
why are measle's mutants not a threat?
Definition

it's because the measles protein coat is so specific that almost any mutation will render the virus helpless.

 

Consequently, there is only one strain of measles.

Term
strain
Definition

viruses that have different binding sites for neutralizing antibodies

Term
why are humans the only possible host for measles?
Definition
because only humans have CD46 receptors
Term
Why must measle be relatively new?
Definition

Because it needs an unbroken chain of infection.

 

Because measles is so specific, it can't mutate, therefore there's only one strain. Once a person contracts that one strain, the adaptive immune system documents it, and life long immunity is gained. That means the virus must consistently find new hosts to infect. These new hosts must be in the near vicinity (coughing distance), and large, congested populations did not exist until about 6,000 years ago, so the virus could not have had a population to infect. So it's new.

Term
what's measle's strategy to avoid antibodies?
Definition

To never leave the inside of the cell.

 

The fusion protein which allows the virus to check its coat at the doof is also capable of fusing with multiple cell membranes. The result? Large blobs of fused cells, containing many nuclei and many hijackable organelles. This lets the virus replicate more in one go, before having to exit the cell and risk the run of meeting with antibodies.

Term
What plays the critical role in defending against a measles attack?
Definition
Killer T cells. Because measles will fuse many cells together at a time, and lie in wait, it's up to the killer T cells to scan for all infected cells and destroy them.
Term
why doens't measles release huge ammounts of interferon?
Definition

They're not sure.

 

It's suspected to be like rhinoviruses, stopping the release,but they're really not sure.

Term

what is an advantage of measles attacking dendritic cells?

Definition

Infecting dendric cells causes measles to attack macrophages and the lymph nodes as well. The fewer macrophages, the weaker the immune response. The destroyed dendritic and macrophages are also the leaders, they direct the immune response. Consequently, some times the wrong antibody is produced, or not enough killer T cells are activated.

 

Oh, and there is research to support that measles also can trigger T cells to commit suicide.

Term
Measle's "second hit"
Definition
Measles initially infects the respiratory tract. Then it goes to the lymph nodes and the entire lymphatic system. Then it returns to the respiratory tract, in even larger, more powerful numbers.
Term
the difference between red eyes in measles and in flu
Definition

Flu peeps usually rub their eyes with contaminated hands.

 

Measles just likes to attack the mucous membranes.

Term
in measles.... where does the rash come from?
Definition
cytokines produced by stressed T cells.
Term
Indirect deaths of measles victims.
Definition
Measles causes immunosupression, leaving the body open to additional infection for almost a year.
Term
measles and the brain
Definition

sometimes, measles will infect the brain. Then the immune response causes swelling, which then destroys myelin sheath, resulting in destruction of the nervous system and possible brain damage and death.

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