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Regulation of Bacterial Gene Transcription
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36
Biology
Undergraduate 2
06/11/2010

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Term
3'-untranslated region (3'-UTR)
Definition
untranslated RNA after coding region
Term
5'-untranslated region (5'-UTR)
Definition
untranslated RNA before coding region, aka 5'-leader
Term
attenuation
Definition
regulation of transcription by binding to attenuator
Term
attenuator
Definition
28 base sequence, when transcribed into RNA, forms hairpin transcription when certain conditions aren't met
Term
autoregulation
Definition
repression of transcription from own promoter in either presence or absence of product
Term
B-galactosidase
Definition
hydrolase enzyme that catalyzes hydrolysis of B-galactosides into monosaccharides, produced by activating lac operon as lacZ gene
Term
cAMP (cyclic AMP)
Definition
produced by adenylate cyclase, part of activator for lac operon
Term
cAMP-CRP complex
Definition
binds to activator site (AS) upstream from lac promoter and activates lac operon transcription, activates more than 100 operons
Term
CAP (catabolite activator protein)
Definition
another name for cAMP receptor protein (CRP)
Term
catabolite repression
Definition
transcription-level inhibition of the lactose enzymes and a variety of other inducible enzymes by glucose (or other readily used carbon sources)
Term
catabolite-sensitive promoter
Definition
sequences that promote transcription of enzymes responsible for catabolism of many other organic molecules, cannot be active if glucose is present
Term
codon
Definition
group of three bases of mRNA nucleotide sequence which protein synthetic machinery reads that specifies an amino acid or termination signal
Term
constitutive enzyme
Definition
synthesized at fixed rates under all growth conditions, usually perform basic cellular "housekeeping" functions
Term
CRP (cAMP receptor protein)
Definition
same thing as CAP
Term
degradosome
Definition
RNA degradation machine: RNase E, polynucletoide phosphorylase, ATP-dependent RNA helicase, and a few other enzymes
Term
gratuitous inducer
Definition
inducers that are not substrates of the activated gene
Term
inducer
Definition
molecule that starts gene expression, disable repressor proteins
Term
inducible enzyme
Definition
their rate of synthesis increases in response to the addition of a small molecule to the medium
Term
merodiploid
Definition
partially diploid, having a second copy of only part of its genome
Term
negative regulation
Definition
repressor turns off the transcription of one or more genes
Term
nitrocellulose filter assay
Definition
study repressor-operator binding: mixture of repressor and radioactive lac DNA passed through nitrocellulose filter; proteins stick to filters and radioactivity retain if filter and lacDNA form complex
Term
open reading frame (OPF)
Definition
segment of mRNA that codes for a polypeptide chain, protein synthetic machinery begins reading the segment at a specific start codon and stops reading it at a specific termination
Term
operator
Definition
DNA site to which a specific repressor protein binds and prevents the initiation of transcription at the adjacent promoter
Term
partial diploid
Definition
merodiploid
Term
polynucleotide phosphorylase
Definition
degrades RNA by adding phosphate groups to phosphodiester bonds to form nucleoside diphosphates. Phosphorolytic cleavage beings at 3'-end and continues 3' to 5'.
Term
positive regulation
Definition
activator activates a promoter
Term
pre-tRNA
Definition
tRNA after cleavage by endonuclease and nucleotide removal by RNase D, generation of 5'P end and 3'OH end (CCA) : 5'P-41 bases-tRNA-2 bases-3'OH
Term
primary transcript
Definition
newly synthesized RNA molecule before it is processed
Term
promoter
Definition
DNA region that facilitates the transcription of a particular gene
Term
promoter upstream element (UP element)
Definition
region upstream of the core promoter that strengthens promoter
Term
pulse-chase experiment
Definition
determines whether a particular RNA molecule or class of RNA molecules is RNA
Term
repressible enzyme
Definition
enzymes that exhibit a decreased rate of synthesis in response to addition of a small molecule in the medium
Term
repressor
Definition
DNA-binding protein that regulates expression of one or more genes by binding to the operator and blocking the attachment of RNA polymerase to promoter
Term
ribonuclease (RNase)
Definition
cleave phosphodiester bonds by adding water 3' to 5'
Term
stringent response
Definition
inhibition of rRNA and tRNA invoked by amino acid starvation that is regulated by synthesis of ppGpp and pppGpp
Term
tRNA nucleotidyl transferase
Definition
adds CCA is added to tRNA that lack CCA-3'-OH termination
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