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Organic Chemstry
The Chemistry of Life
128
Biology
9th Grade
09/16/2011

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Term
Carbohydrates (C,H,O)
Definition
Monosaccharides (simple sugars) - glucose, galactose, fructose
saccarides (2 sugars) - sucrose, lactose
Polysaccarides (many) - starch - plant food
glycogen - animal food
cellulose - plant cell walls,
paper, fiber
chitin - shells of insects,
strong and flexible
Term
Lipids
Definition
fatty acidsTriglycerides (3 fatty acids and a glycerol), Glycerol, phosphate groups (Phospholipids)
Term
Proteins
Definition
Amino acids - joined by peptide bonds - hair,muscle,
skin
Carboxyl, amino group and R group
Term
Nucleic Acids
Definition
DNA - deoxyribose, phosphate, base
(AT, GC)
RNA - Ribose, Phosphate, Base (GC, AU
Term
Carbohydrates
Definition
Compound composed of Carbon, hydrogen and oxygen
Term
Polysaccharides
Definition
larger molecules made by linking individual Carbs
ex. Starch (100's of glucose molecules linked together) and glycogen
Term
Lipid
Definition
-compound that contains carbon and hydrogen and a smaller amount of oxygen
-lipids store energy
- serve as hormones
-build cell membranes
Term
saturated fat
Definition
all the bonds between the carbon atoms are single bonds
Term
unsaturated fat
Definition
one double bond between its carbon atoms
Term
Protein
Definition
compound that consists of smaller molecules called amino acids
Term
Peptide bond
Definition
connects to amino acids
Term
Polypeptide
Definition
hundreds of amino acids are linked together to form a polypeptide (a large molecule)
Term
Enzyme
Definition
chemical substance that speeds up the rated of a chemical reaction ORGANIC CATALYST
Term
Chemistry
Definition
The study of substances and the rules that govern their behavior
Term
Matter
Definition
anything that occupies space and has mass
Term
Elements
Definition
pure substances that cannot be further broken down
Term
Atom
Definition
smallest unit of an element
Term
Atom
Definition
center of the atom is a nucleus composed of neutrons and protons
Term
neutrons
Definition
no charge
Term
protons
Definition
positively charged
Term
electrons
Definition
constantly circle the nucleus and have a negative charge
Term
Ion
Definition
an atom that is charged (unequal number of protons and neutrons)
Term
Ionic bond
Definition
attraction between oppositely charged ions
Term
covalent bond
Definition
sharing of electrons
Term
water molecule
Definition
2 hydrogen atoms bonded to and oxygen atom
Term
compound
Definition
substance made of 2 or more elements (like a compound word that is made of 2 words)
Term
molecule
Definition
when atoms bond, a molecule is formed
Term
molecular formulas
Definition
express the number and type of atoms in a compound
Term
structural formulas
Definition
show where the atoms are actually located and the arrangement of the chemical bonds
Term
chemical change
Definition
takes place when the atoms of a substance bond with 2 atoms or compounds
Term
physical change
Definition
altering the state of something or its appearance without electron sharing or giving (ice changed to water)
Term
Mixture
Definition
formed when 2 substances are combined without chemical bonding (ex. water and sand)
Term
Why is an understanding of chemistry important for an understanding of biology?
Definition
you must understand chemistry (the study of substances and the rules that govern their behavior) to understand biology bc biologists are studying the very processes of life in which changes in matter must take place.
Term
Define 2 components of the physical world
Definition
matter (anything that occupies space and has mass)
energy (the ability to do work or cause change)
Term
What elements are essential to life? What are their chemical symbols?
Definition
Hydrogen (H), Lithium (Li), Sodium (Na), Potassium (K), Rubidium (Rb)
Term
Describe an atom. What is the significance of its electron configuration?
Definition
- the smallest unit of an element
- the electron configuration determines the type of atom
Term
Name and describe two primary types of chemical bonding
Definition
Ionic - attraction between oppositely charged ions
Covalent - sharing of electrons
Term
Define and compare the following: atom, ion, molecule, compound, mixture
Definition
Term
What things can a scientist determine (a) by studying a molecular formula of a compound and (b) by studying a structural formula of a compound?
Definition
(a) number and type of atoms
(b) Where the atoms are actually located and the arrangement of the chemical bonds
Term
Energy
Definition
the ability to do work or to cause change
Term
Kinetic energy
Definition
energy of motion (ex. falling, heat, light and electricity)
Term
Potential energy
Definition
stored energy
Term
thermodynamics
Definition
man's statements of how energy changes occur
Term
entropy
Definition
increase in randomness and loss of usable energy
Term
activation energy
Definition
the energy necessary to start a reaction
Term
catalyst
Definition
substances that affect
Term
Name, describe and give examples or two basic forms of energy
Definition
Kinetic - energy of motion
Potential - stored energy
Term
First Law of thermodynamics
Definition
In any process, energy is neither created no destroyed. Energy can change from one form to the other, but there is always as much at the end as there was at the beginning
Term
Second Law of thermodynamics
Definition
Whenever energy is used (changed from one form to the other), some of it is rendered unusable (some of the energy radiates out of the object, usually as heat or light.
Term
Describe how heat affects the molecules of a substance.
Definition
It causes the molecules to move faster
Term
According the heat energy involved, what are the two basic types of chemical reactions?
Definition
1. endothermic - those that require or absorb heat
2. exothermic - those that give off heat
Term
List two attributes of a catalyst.
Definition
?
Term
Solution
Definition
a homogeneous mixture of one or more substances within another substance
Term
Solute
Definition
the substance that is dissolved
Term
Solvent
Definition
the substance in which it is dissolved
Term
Concentration
Definition
the concentration of a solution is the ratio of the solute in the solvent
Term
Suspension
Definition
amixture in which the kinetic energy of them molecules is not sufficient to maintain the large solute particles evenly dispersed within the solvent
ex. flour will be suspended in water, initially
Term
Colloid
Definition
A specialized mixture in which the particles of colloid are a size that is between that of the particles in a true solution and that of the particles in a suspension.
Term
Polar
Definition
A molecule with charged poles is said to be a polar molecule
Term
hydrogen bond
Definition
The positive pole of one water molecule attracts the negative pole of another water molecule
Term
Diffusion
Definition
the net movement of molecules form an area of higher concentration of a substance to an area of lower concentration of that substance
Term
Equilibrium
Definition
A state in which there are no longer places of higher and lower concentrations - diffusion stops
Term
Concentration gradient
Definition
the difference between numbers of one type of molecule in two adjacent areas (refer to pg 50)
Term
Diffusion pressure
Definition
Is based on the relative concentrations of the adjacent areas (pg 50)
Term
Permeable
Definition
A barrier that allows passage of all molecules is said to be Permeable
Term
Semi-permeable membrane
Definition
a membrane that allow some molecules to pass through and not others
Term
Osmosis
Definition
diffusion of water molecules through a semipermeable membrane
Term
acid
Definition
a compound that donates hydrogen ions when dissolved in water
Term
Base
Definition
a compound that releases hydroxyl ions when it is dissolved in water
Term
Neutralize
Definition
When an acid and base are put together they neutralize each other, forming a salt and water
Term
pH
Definition
Stands for "potential of hydrogen"
The acidity (amount of hydrogen ions) or the alkalinity (amount of hydroxyl ions) of a solution is usually expressed in terms of this value (pH)
Term
Buffer
Definition
-a substance that will combine with either H+ or OH-
- it keeps the pH within a tolerable range
Term
What are two of the most important physical processes that affect organisms?
Definition
Diffusion and Osmosis
Term
What is the difference between a solute and a solvent?
Definition
The solute is the substance that is dissolved (ex. sugar) and the solvent is the substance in which it is dissolved (ex. water)
Term
Describe diffusion and give two examples of how it occurs in the home
Definition
molecules that move from an area of higher concentration of a substance to an area of lower concentration
ex. if a bottle of perfume is left open, the molecules of the perfume will diffuse and leave the fluid and enter the air
ex.When you drop a drop of food coloring into a glass of water, the color moves out eventually until there is an equilibrium (equal amount of it) in the glass of water. This is diffusion. The color diffuses from the higher area of concentration (where it hit the water) to areas of low concentration (the rest of the water) until the concentrations reach equilibrium.
Term
List two main differences between diffusion and osmosis
Definition
Diffusion is the movement of particles from higher concentration to lower, Osmosis is the movement of water across a membrane. (Not sure about the correct answer to this - refer to pages 49-51)
Term
Where does the energy needed for the movement of molecules in diffusion and osmosis come from?
Definition
Kinetic energy ????
Term
List and compare the characteristics of a solution, a suspensions, and colloid.
Definition
See pg 47
Term
Describe acid and base; also explain what happened when the two are mixed together
Definition
acid donates hydrogen ions (H+) when dissolved in water
base - a compound that releases hydroxyl ion (OH-) when dissolved in water
when mixed together the neutralize each other forming a salt and water
Term
What scale describes the degree of acidity or alkalinity of a substance? What range of values indicates an acidic solution? An alkaline solution? A neutral solution?
Definition
-pH expresses the value of acidity or alkalinity
- range of values that indicate and acidic solution: 0-6
- range of values that indicates alkalinity is 8-14
-neutral is 7
Term
What are the causes and effects of acid rain, and who is acid rain a difficulty problem to solve?
Definition
causes: car exhausts an industrial burning of coal and oil release sulfur and nitrogen which turn into acid rain when mixed with atmospheric water
effects: natural buffers in soils and waters are are used up b/c of too much acid rain, plants die, animals are deformed and die
difficult to solve: b/c of the chemicals needed and used in industry
Term
An atom has all the characteristics of and is the smallest unit of a/an ____________
Definition
ELEMENT
Term
The nucleus of an atom is made up of______________
Definition
Protons and Neutrons
Term
A chemical bond characterized by sharing electrons is called a _______________ bond.
Definition
Covalent
Term
The amount of energy required to initiate a chemical reaction is called_________________
Definition
Activation energy
Term
The first law of thermodynamics states that_________________
Definition
energy and matter can be neither created nor destroyed
Term
When only water diffuses through a semipermeable membrane, the process is termed_________________
Definition
Osmosis
Term
Catalysts affect the rate of a reaction by __________
Definition
decreasing the amount of activation energy needed
Term
An aqueous solution that has an excess of hydrogen ions would_______________
Definition
be an acid (have a pH lower than 7)
Term
When mixed together, an acid and a base neutralize each other, forming
Definition
water and a salt
Term
If a bottle of ammonia is spilled in the basement and you begin to smell it upstairs, what process has occurred?
Definition
Diffusion
Term
Chemical retains that release heat are called _________ reactions.
Definition
exothermic
Term
List the three normal states of matter in order of increasing kinetic energy.
Definition
solid, liquid, and gas
Term
In a solution of seawater, is water the solute or the solvent?
Definition
solvent
Term
List four characteristics of water that contribute to it's unique biological importance.
Definition
-polarity of the molecule
-shape of molecule
-specific heat
-the hydrogen bonds between the molecules
Term
Organic chemistry is called the chemistry of _________
Definition
Life
Term
Biosynthesis
Definition
the putting together of substances by living things; it is essential to life
Term
Vitalism
Definition
the theory that life is more than the chemicals which make up living things
Term
Organic compounds
Definition
based on the carbon atom and its unusual bonding characteristics.
Term
carbon backbone
Definition
the chain or ring upon which the remainder of the molecule is built
Term
Enzyme
Definition
proteins that serve as organic catalysts that speed up chemical reactions
Term
Active site
Definition
a part of the surface of the enzyme
Term
Substrate
Definition
the molecule with which the enzyme will bind
Term
Coenzyme
Definition
nonprotein substances that fit into the active site so that it will accept the substrate (ex. vitamins)
Term
what is the difference between organic compounds and inorganic compounds?
Definition
Organic compounds - based on the carbonate atom
Inorganic compounds - come primarily from minerals
Term
List three characteristics of the carbon atom that are important in forming organic compounds.
Definition
-readily form covalent bonds
-the carbon backbone allows for a variety of molecules to be formed
-it also allows for different types of bonds to affect the shape with is very important in organic chem
Term
List the 3 primary functions of organic compounds
Definition
Structural
Enzymatic
Storage
Term
What chemical element is found in all organic compounds?
Definition
Carbon atom
Term
Carbohydrates
Definition
organic compounds that contain carbon, hydrogen and oxygen
Term
Monosaccharides
Definition
basic units of carbohydrates
Term
Why is it accurate to say that enzymes are essential to physical life?
Definition
-they catalyze every reaction within a living organism
-every organic substance that makes up an organism is produced in a chemical retain controlled by enzymes
Term
What substances make up carb? what characteristics do carbs have?
Definition
- carbon, hydrogen and oxygen
-they are organic, store energy and important in structural opponents of organisms
Term
Describe the difference between hydrophobic and hydrophilic molecules.
Definition
phobic- repelled by water
phylic - attracted to water
Term
If a scientist were to assemble a living thing from nonliving parts, would this disprove the Bible?
Definition
No, bc the Bible does not tell us that man will not be able to put together a living thing. Using nonliving parts to assemble a living thing would support the idea God's creation and that it didn't happen by accident.
Term
Self quiz:List the 4 main groups of organic compounds.
Definition
carbs, lipids proteins and nucleic acids
Term
Self quiz: How many pairs of electrons can carbon atoms share with other atoms?
Definition
3
Term
Self quiz: Phospholipids are distinguishable from other lipids by the presence of a/an _______________
Definition
phosphate group
Term
Self quiz: A disaccharide is formed when two sugars combine in a process called ________
Definition
dehydration synthesis
Term
Self quiz:
Definition
Term
Plants normally store energy as starch. Humans store energy as ___________
Definition
fat
Term
Self quiz: A nucleotide is made of all of the following except a sugar, lipid, base or phosphate.
Definition
lipid
Term
Self quiz: RNA is chemically different from DNA b/c RNA contains ______________
Definition
Ribosomes
Term
Self quiz: An unsaturated triglyceride is characterized by
Definition
being liquid at room temperature
Term
Self quiz: DNA produces copies of itself by a process called
Definition
replication
Term
Self quiz: The hydrophobic end of a fatty acid
Definition
is repelled by water.
Term
Self quiz: Phosphorus is an important element in which molecules?
Definition
DNA
Term
Self quiz: In a hydrolysis reaction a ____________ molecule is used
Definition
water
Term
Self quiz:
Definition
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