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Neurobiology Exam 1
N/A
252
Biology
Undergraduate 3
08/30/2012

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Term
Resting membrane potential 
Definition
-40 to -90 mV
Term
Receptor potentials
Definition
activation of sensory neurons by external stimuli -> action potentials
Term
Synaptic potentials
Definition
activation allows transmission of info from one neuron to another -> action potential
Term
Action potentials
Definition
electrical signals from receptor/synaptic potentials... spikes, impulses
Term
Hyperpolarization
Definition
current makes the membrane potential more negative. nothing happens
Term
Depolarization
Definition
current of opposite polarity delivered. membrane becomes more positive than resting potential... at a certain point (threshold)
Term
threshold potential
Definition
certain level of membrane potential where action potential occurs
Term
passive response
Definition
when only small depolarizing currents or hyperpolarizing current pulses go through. no action potential is created
Term
active transporters
Definition
actively move ions into or out of cells against concentration gradients. ion concentration gradients are established by these
Term
ion channels 
Definition
allow only certain kinds of ions to cross the membrane in direction of their conc gradients. selective permeability is due to these
Term
electrochemical equilibrium
Definition
exact balance between two opposing forces: conc gradient that causes K to move and opposing electrical gradient that tends to stop K from moving across the mmbrane
Term
Nernst equation
Definition

E = (58/z) * log out/in

10/100 -> -58 mV (K) 58 (Na)

Term
Goldman equation
Definition
V = 58log (Pk(Kout) + Pna(Naout) + Pcl(Clout))/(same but inside!)
Term
Resting membrane Na, K, Cl, and Ca concentrations
Definition

(in/out)

Na = 5/140

K = 140/5

Cl = 100/500

Ca = 0.0001/10

Term
Why -60mV resting potential?
Definition
Because of potassium is higher on the inside than out and it wants to flow outward -> negative potential. dependent on K because membrane is only permeable to K at resting... K leak channels
Term
equilibrium potential
Definition
generated across the membrane at electrochemical equilibrium
Term
Phases of an action potential
Definition
rising, overshoot, falling, undershoot
Term
rising phase
Definition
membrane becomes extraordinarily permeable to Na and it rushes in... making the membrane really positive. caused by opening of Na selective channels that are closed at resting state
Term
overshoot phase
Definition
when the action potential becomes the most positive and Na permeability is much greater than potassium
Term
falling phase
Definition
sodium channels close and the membrane potential falls. primarily permeable to K and is more permeable. rapidly repolarizes. membrane hyperpolarizes because K permeability becomes even greater than at res
Term
What determines the voltage?
Definition
Both Na and K are 10 fold altered in concentration--but there's selective leakage of K at resting potential and Na during action potential determines it
Term
Current/voltage clamp method
Definition
controls/clamps membrane potential/voltage at any level desired by experimenter. measures membrane potential w/ microelectrode placed in cell and electronically compares this voltage to the voltage maintained (command voltage). clamp passes current back into the cell through another intracellular electrode. this feedback circuit holds membrane potential at desired level. current needed to maintain voltage equals current flowing out of membrane
Term
Two voltage dependent ion currents
Definition
Early current caused by Na (flow in occurs if potential less positive than Ena and reverses when more positive). late current is a delayed efflux of K producing a sustained otward current
Term
Sodium and potassium blocks
Definition
Tetrodotoxin (TTX) blcoks Na current. Tetraethylammonium ions block K currents
Term
Upon depolarization... conductances
Definition
Fast sodium conductance initially and then slower potassium conductance. K takes longer to activate but depolarization causes Na to decrease and inactivate. K does not inactivate. voltage dependent conductances
Term
membrane conductance
Definition
closely related to membrane permeability and ionic currents change due to this
Term
refractory period
Definition
following action potential, axon experiences brief refractory during which it is resistant to further excitation
Term
conduction velocity
Definition
the measurable rate of transmission of an action potential
Term
saltatory conduction
Definition
myelination of axons allows ions to flow down axon without leaking out and generate action potentials more effectively at the breaks in myelination (nodes). AP jumps from node to node
Term
passive conduction
Definition
passive current flow that occurs in the absence of an action potential. current pulse is not strong enough to depolarize and hit the threshold of the membrane
Term
Astrocytes
Definition
glial cells in the CNS that maintain chemical environment
Term
Oligodendrocytes
Definition
glial cells in the CNS that produce myelin for the axons
Term
Schwann cells
Definition
glial cells in the PNS that wrap axons in myelin
Term
nodes of ranvier
Definition
unmyelinated points on axon where action potentials are generated. sodium channels are only found at these nodes
Term
multiple sclerosis
Definition
disease of CNS resulting from multiple regions of demyelination & inflammation along axonal pathways. signs&symptoms depend on location of affected regions. compromises action potential conductance
Term
Patch clamp electrode
Definition
have a very high resistance seal as opposed to sharp electrode. allows you to see microscopic currents (single channels. macro is for many channels in one region) and the resultant opening/membrane potential plot
Term
4 patch methods
Definition

cell attached = record on the membrane w/ tight contact

whole-cell = membrane break and cytoplasm is same with pipette interior

inside-out = break off piece of membrane with channel on. "air" is cytoplasm domain

outside-out break from both sides of membrane and ends anneal... pipette is inside cell, cytoplasm

Term
States of voltage-gated K & Na channels
Definition

closed -> open -> inactivated

both are closed when hyperpolarized. potential depolarized both open (na first) and then na inactivates during depolarization but k does not

Term
heterologous expression of ion channels
Definition
one of the primary tools for studying ion channel function. after id-ing and cloning channel, insert cDNA or RNA into a cell and can study it
Term
4 voltage gated channels
Definition

selectively permeable to each of the major physiological ions. Na, Ca, K, Cl

Human genes... 10 Na, 10 Ca, 100 K+, ~5 Cl. 

K is the most diverse

Term
3 ligand gated channels
Definition
extracellular activated neurotransmitter receptor (Glutamate), activated by intracellular second messengers: calcium-activated K channel, cyclic (cAMP) gated channel
Term
Stretch and heat activated channels
Definition
respond to heat/membrane deformation. ex. TRP receptors
Term
pore
Definition

two membrane-spanning domains of all ion channels form a central pore through which ions can diffuse... one of them contains a protein loop conferring ion selectivity

AA composition of pore loop differs according to which ion the channel conducts

has to fit the ion when it is dehydrated through the middle (where selectivity comes into play)

Term
potassium ion channel
Definition
alpha-4 and beta subunits. 
Term
channelopathies 
Definition
several genetic diseases resulting from small but critical alterations in ion channel genes. in most... produce either myotonia (stiffness) or paralysis
Term
active transporters
Definition
in charge of generating and maintaining ionic conc gradients for particular ions. allow ions to travel against conc gradients
Term
ATPase pumps
Definition
active transporters that acquire energy directly from hydrolysis of ATP
Term
Na/K AtPase pump
Definition
responsible for maintaining conc of Na and K. electrogenic=establishes electrochemical gradient because unevenly distributes... 3 Na removed = 2 K in. uses up 1/3 of brains energy
Term
ion exchangers (Na/H)
Definition
takes ions up gradient while taking another ion down its gradient. Na/H regulates intracellular pH
Term
co-transporters
Definition
transmitter pumps: SerT. transports ions and molecules, one down and the other up the gradient either in same direction (symporter) or in different directions (antiporter)
Term
10^16!
Definition
100 billion neurons in the brain; 1000 synapses each; 100 neurotransmitters
Term
electrical synapses
Definition
permitting direct, passive flow of electrical current from one neuron to another. gap junctions where ions flow through. direct contact! connexins. bi-directional
Term
chemical synapses
Definition
space between neurons = synaptic cleft. synaptic vesicles from presynaptic fuse with membrane and release neurotransmitters that bind to receptors on postsynaptic
Term
electrical synapse in detail
Definition
3.5 nm gap. 0.1 ms delay. connexins that span both membranes connecting the two. tight junctions. bi directional. used in escape circuits for fast transmittion. synchrony, coordinates chemical signals too
Term
chemical synapse in detail
Definition
synaptic vesicles fuse and release neurotransmitter when calcium flows in. synaptic cleft where it goes through. cotransmitters (two in same terminal), 3-5ms delay
Term
Axonal transport
Definition
vesicle components transported by slow axonal transport down to terminal to synthesize transmitters ~1mm/day
Term
small neurotransmitters
Definition
made in the synapse and packaged in 50 nm small clear core fesicles. fast release
Term
peptides (as neurotransmitters)
Definition
made in cell body and travel by fast axonal transport ~400 mm/day along microtubules. packaged in >100nm large dense-core vesicles. slower release and needs more Ca to rush in
Term
quantal release
Definition
examined at NMJ. miniature end plate potentials (MEPPs- occur in absence of stimulation). each MEPP corresponds to a number of vesicles (quanta) and many MEPPS add up to an EPP.  
Term
end plates
Definition
synapses of spinal motor neuron and skeletal muscle cells
Term
end plate potential (EPP)
Definition
when membrane potential in postsynaptic muscle fiber is large enough to induce action potential
Term
vesicle cycle
Definition
one minute. fusion takes 1ms, endocytosis takes 15s and fusion-dock-priming takes 45s. refer to pg. 97 figure 5.9
Term
vesicle release
Definition
synapsin (binds to synaptic vesicles) and may cross-link vesicles to actin filaments in cytoskeleton, keeping them tethered. mobilization of this pool results from phosphorylation of synapsin by kinases... Ca/calmodulin-dependent protein kinase type II (CaMKII). syanpsin dissociates and vesicles are free to go to plasma membrane... dock and then fuse
Term
myasthenias; botilism and tetanus; latrotoxin
Definition
abnormal transmission at neuromuscular synapses that leaad to mucular weakness and fatigueability and due to reduction in neurotransmitter release because of loss of Ca channels. toxins, botulinum and tetanus toxin mess up the docking. latrotoxin causes massive discharge of synaptic vesicles even when Ca is absent
Term
neurexins/neuroligins
Definition
neurexins bind to synaptotagmin (important for exocytosis) in presynaptic--specify synapse formations. neroligins mediate synapse formatioins on the postsynaptic. disorders can arise like autism and schizo. neurexin is like a receptor for neroligin and the two contact and "shake hands" making a connection between the two and produce a synapse
Term
neurotransmitter receptors
Definition
either ionotropic or metabotropic. 
Term
ionotropic receptors
Definition
linked directly to ion channels (aka ligand-gated ion channels). combine transmitter binding and channel functions into one. for small molecule usually and fast!
Term
metabotropic receptors
Definition
eventual movement of ions through a channel depends on one or more metabolic steps. usually require G-proteins. also called G-protein-coupled receptors
Term
endplate current
Definition
the macroscopic current resulting from summed oepning of many channels at the end plate
Term
EPSP
Definition
excitatory post synaptic potentials increase likelihood of action potentials occuring
Term
IPSP
Definition
inhibitory post synaptic potentials decrease likelihood of action potentials from occuring
Term
summation
Definition
allows subthreshold epsps to incluence action potential production. they sum together (in space and time) to go above threshold and cause membrane to depolarize 
Term
neuropeptides
Definition
relatively large transmitter molecules composed of 3 to 36 amino acids
Term
small-molecule neurotransmitters
Definition
individual amino acids, ions, etc. much smaller than neuropeptides. biogenic amines (dopa, nore, epi, seroto, hista) are often discussed separately
Term
ionotropic receptors (8)
Definition
nACh (nACh-alpha), AMPA (gluA1), NMDA (GluN), Kainate (GluK), GABA (GABA-A), Serotonin (5HT3), purinergic (p2x), glycine
Term
metabotropic receptors (8)
Definition
ACh (muscarinic M1), glutamate (mGlu), GABA (GABA-B), dopamine (D1), serotonin (5HT1), Adrenergic (beta), histamine (H), purine (A&P class)
Term
acetylcholine effect
Definition
excitatory
Term
ACh precursor
Definition
choline + acetyl CoA
Term
ACh rate-limiting step in synthesis
Definition
CAT
Term
ACh removal mechanism
Definition
AChEase
Term
Glutamate effect
Definition
excitatory
Term
glutamate precursor
Definition
glutamine
Term
glutamate rate-limiting step in synthesis
Definition
glutaminase
Term
glutamate removal mechanism
Definition
transporters
Term
GABA effect
Definition
inhibitory
Term
GABA precursor
Definition
glutamate
Term
GABA rate-lim step
Definition
GAD
Term
GABA removal
Definition
transporters
Term
Glycine effect
Definition
inhibitory
Term
glycine precursor
Definition
serine
Term
glycine rate-lim step
Definition
phosphoserine
Term
glycine removal
Definition
transporters
Term
catecholamines (epi, nore, dopa) effect
Definition
excitatory
Term
catecholamine precursor
Definition
tyrosine
Term
catecholamine rate-lim step
Definition
tyrosine hydroxylase
Term
catecholamine removal
Definition
transporters, MAO, COMT
Term
serotonin (5-HT) effect
Definition
excitatory
Term
serotonin (5-HT) precursor
Definition
tryptophan
Term
serotonin (5-HT) rate-lim step
Definition
tryptophan hydroxylase
Term
serotonin (5-HT) removal
Definition
transporters, MAO
Term
histamine effect
Definition
excitatory
Term
histamine precursor
Definition
histidine
Term
histamine rate-lim step
Definition
histidine decarboxylase
Term
histamine removal
Definition
transporters
Term
atp effect
Definition
excitatory
Term
atp precursor
Definition
adp
Term
atp rate-lim step
Definition
mitochondrial oxidative phosphorylation; glycolysis
Term
atp removal
Definition
hydrolysis to AMP and adenosine
Term
neuropeptides effect
Definition
excitatory and inhibitory
Term
neuropeptides precursor
Definition
amino acids, protein synthesis
Term
neuropeptides rate-lim step
Definition
synthesis and transport
Term
neuropeptides removal
Definition
proteases
Term
endocannabinoids effect
Definition
inhibits inhibition
Term
endocannabinoids precursor
Definition
membrane lipids
Term
endocannabinoids rate-lim step
Definition
enzymatic modification of lipids
Term
endocannabinoids removal
Definition
hydrolysis by FAAH
Term
endocannabinoids vesicle
Definition
none!
Term

Acetylcholine (ACh)

removal, transporters, toxin

Definition
acetylcholinesterase (AChE) hydrolyzes ACh -> acetate and choline in the synapse. Na+/choline transporter takes choline back into presynaptic terminal. Vesicle H+ exchange transporter. organophosphates (sarin) inhibit AChE causing depolarization -> neuromuscular paralysis. 
Term
nicotinic ACh receptor (nAChR)
Definition
mediates postsynaptic acitions. ionotropic. five subunits. a-bungarotoxin, curare = blocks nAChR. nicotine, betel nut = binds to it and stimulates
Term
Glutamate
Definition
does not cross BBB. synthesized in cytoplasm and packaged into vesicles = VGLUT. requires depolarization and transmits Ca (NMDA)
Term
Glutamate-glia-glutamine cycle
Definition
EAATs (excitatory amino acid transporters) take up glutamate into glial cells. converted into glutamine by glutamine synthetase then transported out and into nerve terminals
Term
glutamate receptors
Definition
NMDA, AMPA, and kainate. ionotropic. always produce EPSPs (Na, K, Ca)
Term
glutamate excitotoxicity 
Definition
when receptors get overactivated due to excess glutamate and results in nerve cell damage or death
Term
NMDA receptor
Definition
Ca can come in. Mg blocks this pore at hyperpolarized & resting states, depolarization -> pushes ion out. SLOWer and longer lasting
Term
AMPA receptor
Definition
main transmission of glutamate. faster than NMDA
Term
Kainate receptor
Definition
weaker. sometimes found on presynaptic as feedback to regulate glutamate release
Term
GABA/glycine
Definition
inhibitory. GAT = high-affinity transporters on glia and neurons to remove. 
Term
GABA receptors
Definition

GABA-A, GABA-B, GABA-C (A and C are ionotropic, B is metabotropic). inhibitory because they're permeable to Cl- (A&C). 5 subunits. for B, inhibitory because it activates K channels and blocking Ca channels = hyperpolarization. heterodimers

 

Term
GABA agonists/modulators
Definition
benzodiazepines and barbiturates-treat epilepsy, sedation, anesthesia. binding site in pore domain
Term
biogenic amines
Definition
three catecholamines = dopamine, norepinephrine, and epinephrine. and histamine & serotonin. 
Term
catecholamine synthesis
Definition
tyrosine -> dopamine -> noradrenaline (norepinephrine) -> adrenaline (epinephrine)
Term
dopamine
Definition
coordination of body movements. motivation, reward, reinforcement. loaded into synaptic vesicles via VMAT. acts on GPCRs. activate/inhibit AC. in substantia nigra
Term
VMAT
Definition
vesicular monoamine transporter. blocked by reserpine
Term
norepinephrine (noradrenaline)
Definition
sleep, wakefulness, attention, feeding. in locus coeruleus. acts on a and b-adrenergic receptors (GPCR)
Term
DAT
Definition
Na-dependent dopamine transporter. reuptake of dopamine into nerve terminals/surrounding glial ells. cocaine inhibits DAT
Term
MAO and COMT
Definition
monoamine oxidase and catechol O-methyltransferase. enzymes involved in catabolism of dopamine in neurons & glial cells. (MAO-Inhibitors)
Term
epinephrine (adrenaline)
Definition
primarily in tegmental system and in medulla. VMAT loads. acts on a and b-adrenergic receptors
Term
L-DOPA
Definition
from tyrosine to L-DOPA. precursor to the catecholamines
Term
histamine
Definition
in hypothalamus. metabotropic receptors (like H1 in the CNS). diphenhydramine (benadryl) acts as an antagonist to mediate allergic reactions. degraded by histamine methyltransferase and MAO
Term
serotonin
Definition
(5-HT). found in raphe nuclei. SerT transporter terminates serotonin activity. catabolic pathway mediated by MAO
Term
SSRIs
Definition
selective serotonin reuptake inhibitors. inhibit transport of 5-HT by SERT (Prozac)
Term
serotonin receptors
Definition
all are metabotropic except for 5-HT3
Term
Purinergic receptors
Definition
P2X and A2A adenosine receptor
Term
P2X receptor
Definition
receptor for ATP. ionotropic
Term
A2A receptor
Definition
adenosine receptor. G-protein coupled receptor -> cAMP. binds adenosine. caffeine blocks adenosine receptors = stimulates
Term
Peptides
Definition
hormones or proteins, amino acids (3-36)
Term
pre-propeptides
Definition
larger than the mature peptide produced by neuron. processing of them takes place
Term
propeptide
Definition
mature polypeptide that then gets packaged into vesicles
Term
brain-gut peptide
Definition
ex. substance P. sensory neurotransmitter in spinal cord. pain sensing
Term
opiod peptides
Definition
bind to same receptors that opium does. ex. endorphins. act as analgesics
Term
pituitary peptides
Definition
ex. oxytocin
Term
hypothalamic peptides
Definition
ex. TRH
Term
Misc. peptides
Definition
ex. neuropeptide Y, blocks traumatic events (used by the army)
Term
endocannabinoids
Definition
interact with cannabinoid receptors (targets of weed). produced from degradation of membrane lipids
Term
andanamide
Definition
ex. of a endocannabinoid
Term
CB1
Definition
cannabinoid receptor in the CNS. GPCR. 
Term
endocannabinoids inhibition
Definition
serve as retrograde signals to regulate GABA release at certain terminals. released after membrane is depolarized with more Ca and binds to CB1 on presynaptic and inhibits GABA released 
Term
paracrine signaling
Definition
acts over a longer range than synaptic transmission and involves the secretion of chemical signals onto a group of nearby target cells. ex. serotonin
Term
synaptic transmission
Definition
special form of chemical signaling that transfers info from one neuron to another ex. ACh
Term
endocrine signaling
Definition
secretion of hormones into the bloodstream where they can affect targets throughout the body ex. vasopressin
Term
intracellular signal transduction
Definition
molecular signal and a receptor that transduces the info with a target molecule to mediate the response
Term
signal amplification
Definition
occurs because individual signaling reactions can generate a much larger number of molecular products than the number of molecules that initiate the reaction. occurs in all signal transduction pathways
Term
no signal amplification
Definition
when neurotransmitter serves as the signal and receptors serve as transducing receptor, and target is an ion channel that is altered to cause electrical response
Term
cell-impermeant
Definition
typically bind to receptors associated with cell membranes. ex. neurotransmitters bind to receptors. short-lived because rapidly metabolized/internalized by endocytosis
Term
cell-permeant
Definition
molecules can cross the plasma membrane to act directly on receptors that are inside the cell ex. steroids
Term
cell-associated signaling
Definition
molecules are arrayed on extracellular surface of the plasma membrane. act only on other cells that are physically in contact with the cell that carries such signals
Term
channel-linked receptors
Definition
aka ligand-gated ion channels/ionotropic receptors. have receptor and transducing functions as part of the same protein molecule. open/close of ion channel pore. can lead to entry of Ca -> second messenger
Term
enzyme-linked receptors
Definition
have extracellular binding site. intracellular domain is an enzyme whose catalytic activity is regulated by the binding of the extracellular signal. usually protein kinases that phosphorylate intracellular target proteins/tyrosine residues. ex. TrkA receptor, neurotropin binding
Term
GPCR
Definition
g-protein-coupled receptors involve intermediate transducing molecule = GTP-binding proteins/G-proteins. 7-transmembrane receptors (metabotropic). ex. B-adrenergic, muscarinic, etc. 
Term
intracellular receptors
Definition
activated by cell-permeant/lipophilic signaling molecules. lead to activation of signaling cascades producing new mRNA/protein within target cell. often comprise of receptor protein bound with inhibitory complex
Term
heterotrimeric g-proteins
Definition
composed of 3 distinct subunits. a, b, and y. a binds either GTP or GDP. binding of GDP allows a to bind to b and y = inactive trimer. extracellular signal turns GDP -> GTP and a dissociates and activates the g-protein. 
Term

monomeric g-proteins 

(small g-proteins)

Definition
also relay signals from activated cell surface receptors to intracellular targets like cytoskeleton and vesical trafficking. ex. Ras (helps regulate cell differentiation and proliferation by relaying signals from receptor kinases to nucleus)
Term
3 different heterotrimeric g-proteins
Definition
Gs, Gq, Gi
Term
Gs
Definition
ex. b-adrenergic with norepinephrine. synthesis! activates AC -> cAMP -> PKA -> increase protein phorsphorylation
Term
Gq
Definition
activating. ex. mGluR with glutamate. -> phospholipase C -> DAG & IP3 -> Ca release and PKC -> protein phosphorylation & activate Ca-binding proteins
Term
Gi
Definition
inhibitory. ex. dopamine D2 with dopamine. deactivates AC, camp, and PKA. decreases protein phosphorylation
Term
Ca2+ second messenger
Definition
info is transmitted by transient rise in cytoplasmic ca conc. ca binds to other proteins ex. calmodulin effects protein kinases. ca level in cell typically low. calcium pump, Na/Ca exchanger = replaces intra Ca with extra Na. calbindin serve as ca buffers. IP3 opens ca channels
Term
cAMP
Definition
cyclic adenosine monophosphate. derivative of ATP. produced when AC is activated by G-proteins. can bind to PKA (phosphorylates proteins) and ligand-gated ion channels (neuronal signaling)
Term
cGMP
Definition
cyclic guanosine monophosphate. derivative of GTP and produced after GC is activated. can bind to PKG (phosphorylates proteins) and ligand-gated ion channels (neuronal signaling)
Term
IP3
Definition
inositol triphosphate. leaves cell membrane and diffuses within cytosol. binds to IP3 reeptors, channels that release ca from ER. action is to produce another second messenger
Term
DAG
Definition
diacylglycerol. remains within membrane and activates protein kinase C (phosphorylates substrate proteins in plasma membrane and elsewhere)
Term
IP3 and DAG production
Definition
membrane messengers produced from phosphatidylinositol biphosphate (PIP2). cleaved by phospholipase C, activated by G-proteins and calcium ions. split into two smaller molecules... DAG and IP3
Term
cyclic nucleotides removal
Definition
degraded by phosphodiesterases, enzymes that cleave phosphodiester bonds and convert cAMP and CGMP into AMP and GMP
Term
DAG and IP3 removal
Definition
actions are terminated by enzymes that convert them into inert forms and recycled back to produce new PIP2
Term
cAMP and cGMP cycle
Definition
******
Term
IP3/DAG cycle
Definition
*****
Term
protein kinase/phosphatase cycle
Definition
protein kinases phosphorylate. protein phosphatases remove phosphates. typically act either on Ser/Thr resideies, or Tyr. second messenger activates protein kinase and phosphorylates protein. second messenger regulates protein phosphatase which then removes phosphate from protein
Term
cAMP-dependent protein kinase (PKA)
Definition
primary effector of cAMP. tetrameric complex with 2 catalytic and 2 regulatory subunits. cAMP binds and PKA releases catalytic subunits. phosphorylates Ser/Thr residues
Term
Ca/CaMKII
Definition
ca binds to calmodulin and regulates protein phospho/dephosphorylation. CaMKII is most abundant kinase... 14 subunits. activates CaMKII by displacing inhibitory domain from catalytic site
Term
Protein kinase C (PKC)
Definition
diverse monomeric kinases activated by DAG and Ca. DAG causes PKC to move from cytosol to membrane. relieves autoinhibition and causes PKC to phosphorylate various protein substrates. diffuses to cytoskeleton where it phosphorylates other substrate proteins. 
Term
protein tyrosine kinases
Definition
RTKs = transmembrane proteins that phsophorylate Tyr. Non-receptor tyrosine kinases are cytoplasmic and indirectly activated by extracellular signals. tyrosine phosphorylation is less common than Ser and Thr. important for cell growth and differentiation
Term
mitogen-activated protein kinase (MAPK)
Definition
aka ERKs (extracellular signal-regulated kinases). control of cell growth. activated when phosphorylated by other kinases. part of kinase cascade (typically starts with growth factor) and in turn activates Ras... eventually MAPK gets activated and can phosphorylate transcription factors. 
Term
Ras/MAPK
Definition
Ras activates MAPK by phosphorylation
Term
Ca/CaMKII
Definition
Ca binds to CaMKII and activates it
Term
cAMP/PKA
Definition
cAMP binds to PKA and its catalytic subunits are freed to phosphorylate target units
Term
Dendritic spine
Definition
presence of globular tips/spine heads. synapses innervating dendrites are made from these heads. connected to dendrites by spine necks. site of localized signaling**
Term
CREB/CamKII
Definition
CREB = cAMP response element binding protein. transcriptional activator. PKA&ras can phosphorylate CREB. can also be phosphorylated by increased ca levels, caused by Ca/calmodulin kinase IV (relative of CamKII)**.  genes sensitive to CREB = c-fos, neurotrophin BDNF, tyrosine hydroxylase, etc. 
Term
CREB
Definition
can be activated by cAMP/PKA, Ca/CamKIV, and ras/MAPK
Term
nerve growth factor (NGF)
Definition
member of the neurotrophin growth factor family and is required for the differentiation, survival, and synaptic connectivity of sympathetic and sensory neurons. works by binding to a high affinity tyrosine kinase receptor, TrkA found on plasma membrane of target cells. 
Term
NGF/TrkA
Definition
NGF binds to TrkA receptors causing them to dimerize. then phosphorylates its partner receptor and triggers three different pathways
Term
3 pathways of NGF
Definition
PI3/Akt pathway, ras/MAPK, and PLC/Ca pathway
Term
NGF: PI3 kinase pathway
Definition
TrkA activates this pathway... adapter proteins -> PI 3 kinase -> Akt kinase which increases cell survival, inhibits cell death
Term
NGF: ras pathway
Definition
TrkA triggers ras cascade. GEF -> ras -> kinases activated -> MAPK -> neurite outgrowth and neuronal differentiation
Term
NGF: PLC/Ca2+
Definition
TrkA stimulates activity of phospholipase C which increases IP3 and DAG and increases Ca release from ER and activates PKC -> neurite outgrowth and neuronal differentiation
Term
long-term depression (LTD)
Definition
observed between synapses of parallel fibers (PFs) and their Purkinje cell targets. form of synaptic plasticity that causes PF synapses to become less effective
Term
Purkinje/PF synapse 
Definition
Pfs active... release glutamate activating AMPA and causes small EPSP... PF synaptic transmission generates two second messengers. mGluR/PLC and PKC
Term
Purkinje/PF: mGluR & PLC
Definition
glutamate released by PFs activates metabotropic glutamate receptors... stimulated phospholipase C and produces IP3 & DAG. 
Term
Purkinje/PF: PKC & LTD
Definition
LTD is induced when PF synapses are activated at the same time as glutamatergic climbing fiber synapses that also innervate Purkinje cells (produce large EPSPs) causing Ca to enter Purkinje cell. When both synapses are activated. rise in Ca caused by climbing fiber enhances sensitivity of IP3 receptors to IP3 produced by PF and allows IP3 receptors to open and release Ca from ER. large rise in Ca with DAG produced activates PKC. phosphorylates substrate proteins... ultimately changes AMPA receptors at PF synapse so taht these receptors produce smaller electrical signals in response to glutamate released. weakening of synapse = LTD. 
Term
Tyrosine hydroxylase
Definition
governs synthesis of catecholamine neurotransmitters (dopamine, norepinephrine, and epinephrine). NGF, electrical activity, and other signals can increase rate of catecholamine synthesis by increasing activity of tyrosine hydroxylase. due to phosphorylation of this enzyme
Term
Tyrosine hydroxylase/protein Ca
Definition
tyrosine hydroxylase is substrate for several protein kinases (PKA, CaMKII, MAPK, and PKC). phosphorylation increases catalytic activity. stimuli elvating cAMP, Ca, and DAG all increase its activity -> increase in rate of catecholamine biosynthesis
Term
fast synaptic plasticity
Definition
synaptic facilitation, synaptic depression, synaptic potentiation/augmentation
Term
synaptic facilitation
Definition
rapid increase in synaptic strength that occurs when two or more action potentials invade presynaptic within few ms of each other. lasts for tens of ms. result of prolonged elevation of presynaptic calcium levels following synaptic activity (mechanisms returning ca to resting levels are much slower). ca builds up and more neurotransmitter is released
Term
synaptic depression
Definition
causes neurotransmitter release to decline during sustained synaptic activity. depression is related to rate of release of vesicles. when rapid, lots of depression and if rate is reduced, less depression. 
Term
vesicle depletion hypothesis
Definition
depression causes the strength of transmission to decline until synaptic vesicle supply is replenished
Term
synaptic potentiation & augmentation
Definition
elicited by repeated synaptic activity and serve to increase the amount of transmitter released from presynaptic terminals. enhance ability of incoming ca to trigger fusion of vesicles w/ plasma membrane. augmentation rises and falls over a few seconds, potentiation occurs over tens of seconds to minutes. 
Term
post-tetanic potentiation (PTP)
Definition
potentiation (because of slower time course) can greatly outlast the tetanus. 
Term
Aplysia
Definition
sea slug with large neurons. exhibit forms of behavioral plasticity = habituation and sensitization
Term
habituation
Definition
process that causes animal to become less responsive to repeated occurrences of a stimulus ex. siphon stimulation in aplysia, after repeats, withdrawal weakens
Term
sensitization
Definition
allows an animal to generalize an aversive response elicited by a noxious stimulus to a variety of other, non-noxious stimuli ex. aplysia habituated to siphon touching... sensitization elicited by pairing with electrical stimulus to tail
Term
Two circuits in aplysia
Definition
one sensory-motor, and modulatory
Term
Aplysia circuitry
Definition
Siphon touching activates sensory neuron that excites interneuron and gill motor neuron yielding contraction of gill muscle. shock to animal's tail stimulates modulatory neurons that alter synaptic transmission between siphon sensory neurons and gill motor neurons = sensitization
Term
Facilatory interneuron in aplysia circuit (short term)
Definition
sensory neurons of tail excite modulatory interneurons that release serotonin on presynaptic terminals of sensory neurons of siphon... enhances transmitter release from siphon neuron terminals -> increased synaptic excitation of the motor neurons. serotonin released binds to GPCRs on presynaptic terminals of siphon... stimulating cAMP and binds to PKA -> reduce probability of K channels opening... prolongs action potential -> more Ca influx
Term
long-term sensitization in aplysia
Definition
same serotonin-induced enhancement of glutamate release... but due to changes in gene expression and protein synthesis = long. with repeated training... serotonin-activated PKA now phosphorylates and activates CREB, increasing trasncription of genes. CREB stimulates ubiquitin hydroxylase (stimulates degradation of reg subunit of PKA) = PKA always active and no longer requires serotonin. CREB stimulates C/EBP stimulates transcription of genes that cause addition of synaptic terminals -> long term increase in number of synapses between sensory and motor neurons
Term
Fly mutants
Definition
rutabaga (mutant adenylyl cyclase-converts ATP to cAMP) and dunce (mutant phosphodiesterase-degrades cAMP). mutants showed lowered performance in learning and memory
Term
Hippocampus
Definition
brain area that is esp important in formation and/or retrieval of some forms of memory. 5'-12 hrs***
Term
long-term potentiation (LTP)
Definition
patterns of synaptic activity producing long-lasting increase in synaptic strength
Term

long-term depression (LTD)

 

Definition
patterns of activity produce a long-lasting decrease in synaptic strength
Term
Sites of LTP in Hippocampus
Definition
perforant pathway (from entorhinal cortex) -> Mossy fibers (granule cell) -> CA3 pyramidal cell -> goes through schaffer collaterals -> CA1 pyramidal cell. Refer to pg. 187, figure 8.6
Term
Schaffer collatarels/CA3-CA1
Definition
CA1 region forms thick band (stratum radiatum). receives synapses from Schaffer collatorals... axons of pyramidal cells in CA3 region. LTP is observed from high-frequency train stimuli from Schaffer collatarels to CA1
Term
LTP = state-dependent
Definition
LTP is state-dependent = state of membrane potential of postsynaptic cell determines whether or not LTP occurs. If single weak stimulus to Schaffercollaterals is paired with strong depolarization of CA1 cell, activated schaffer collateral synapses undergo LTP (only if tightly linked in time)
Term
LTP = input specificity
Definition
LTP induced by activation of one synapse does not occur in other, inactive synapses that contact same neuron. Restricted to activated synapses 
Term
Associativity of LTP
Definition
pairings of stimulations. ex. if one pathway is weakly activated but neighboring pathway is strongly activated, both synaptic pathways undergo LTP. One cell is tetanus and the other one is co-firing -> LTP at both
Term
Testing Schaffer collatarel circuit
Definition
pre-stimulate (strong=tetanus) for pathway 1. then test-stimulate pathway 1 and 2... only synapses at pathway 1 show LTP = synapse specific. Paired stimulation of pre/post is same as tetanus. 
Term
LTP selectivity (NMDA receptor)
Definition
NMDA is permeable to Ca2+ but is blocked by Mg2+. If receptor receives glutamate but if post is at resting membrane state, NMDA is still blocked by Mg and won't open while AMPA opens--mediated by AMPA. When post is depolarized (high frequency stimulation) will cause summation of EPSPs->prolonged depolarizations and Mg goes out, letting Ca come in -> increase in Ca in dendritic spines is trigger for LTP
Term
NMDA depolarization
Definition
NMDA receptor opens to induce LTP only when glutamate is bound to receptor AND postsynaptic cell is depolarized to relieve Mg block of channel pore. 
Term
LTP: Ca2+
Definition
rise in Ca2+ in post CA1 (through NMDA) serves as second messenger that induces LTP. does this by activating complicated cascades... CaMKII and PKC
Term
LTP: CaMKII
Definition
most abundant postsynaptic protein at Schaffer synapses and inhibition of it prevents LTP. able to phosphorylate itself... possibly why it can prolong duration of LTP. targets may include AMPA receptors. 
Term
LTP: AMPA insertion
Definition
After Ca comes in... and activates CaMKII...leads to insertion of new AMPA receptors in postsynaptic spine, increasing its sensitivity to glutamate
Term
Silent synapses
Definition
synapses that don't respond at normal resting membrane potential but one depolarized, can transmit robust electrical responses. silence is due to voltage-dependent blockade of NMDA receptors by Mg. glutamate, at these synapses, ONLY binds to NMDA receptors. how does it avoid AMPA? AMPA more low-affinity so conc arent high enough or AMPA are not functional, or only have NMDA (latter seems to be more true)
Term
Late phase of LTP
Definition
initiated by PKA which activates transcription factors like CREB (stimulates other proteins)... goes to nucleus to affect gene expression
Term
LTD: Schaffer collaterals
Definition
occurs when Schaffer collaterals are stimulated at a low rate (about 1 Hz) for long periods (10-15 minutes). depresses EPSP and specific to activated synapses. 
Term
LTD and LTP interplay
Definition
LTD can reverse increase in EPSP by LTP and vice versa. LTP can erase decrease in EPSP by LTD. reversibly affect synaptic efficiency by acting at common site
Term
LTD mechanism
Definition
result from activation of Ca-dependent phosphatases that cleave phosphate groups from target moelcules. associated with a loss of synaptic AMPA receptors (internalization of AMPA receptors into postsynaptic cell due to clathrin-dependent endocytosis mechanisms
Term
LTD in cerebellar Purkinje cells
Definition
Purkinje cells receive input from climbing and parallel fibers. LTD reduces strength of transmission at parallel fiber synapse and climbing fiber as well. associative, occurs only when climbing and parallel activated at same time
Term
LTD molecular basis in cerebellar Purkinje cell
Definition
parallel -> glutamate activates AMPA and metabotropic receptors. membrane depolarization + IP3 & DAG. climbing fiber -> influx of Ca.... work together to increase Ca more and activate PKC. AMPA phosphorylated by PKC and this causes internalization. decreases response of cell to glutamate release
Term
spike timing-dependent plasticity
Definition
requirement for precise timing between presynaptic and postsynaptic activity for induction of these long-lasting synaptic plasticity. has to do with Ca levels. if pre is before, then ca can rush in with the EPSP = LTP. if post is before... less Ca will flow in when EPSP comes from pre = LTD
Term
Activity: LTP vs. LTD
Definition
LTP requires high-frequency activity while LTD is induced by low-frequency activity
Term
LTD timing
Definition
at given low frequency synaptic activity, ltd will occur if presynaptic activity is preceded by postsynaptic action potential (post is 40 ms or less before pre)
Term
LTP timing
Definition
LTP occurs if postsynaptic action potential follows presynaptic activity (pre is 40 ms or less before)
Term
Vesicle & Membrane proteins
Definition
Synaptobrevin and synaptotagmin (calcium detector) are on the vesicle. Snap and syntaxin are on the membrane. lock up and once calcium enters, fuse with the membrane 
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