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Molecular Genetics - Harris - Exam 1
Review of Material through Exam 1
42
Biology
Undergraduate 4
02/11/2013

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Term
Purines
Definition
Adenine and Guanine
Term
Pyrimidines
Definition
Thymine, Cytosine and Uracil
Term
Adenine Structure
Definition
http://hal.weihenstephan.de/genglos/images/adenine.gif
Term
Guanine Structure
Definition
http://upload.wikimedia.org/wikipedia/commons/c/cf/Guanine_chemical_structure_2.png
Term
Thymine Structure
Definition
http://www.molecularstation.com/molecular-biology-images/data/502/thymine-chemical-structure.png
Term
Cytosine Structure
Definition
http://upload.wikimedia.org/wikipedia/commons/thumb/8/8b/Cytosine_chemical_structure.svg/301px-Cytosine_chemical_structure.svg.png
Term
Uracil Structure
Definition
http://images2.wikia.nocookie.net/__cb20071105003559/psychology/images/9/9e/Uracil_chemical_structure.png
Term
The nitrogenous base ______ in RNA is altered to produce ________.
Definition
uracil, thymine (5-methyluracil)
Term
Nucleoside
Definition
nitrogenous base + sugar
Term
Nucleotide
Definition
nitrogenous base + sugar + phosphate
Term
This nucleoside has a ribose rather than deoxyribose understood in its name
Definition
Thymidine
Term
Another name for adenylate is ______.
Definition
adenylic acid or adenosine monophosphate
Term
H. sapiens have a DNA of ___________ Mb.
Definition
3000 Mb
Term
Chargaff
Definition
determined proportions of bases varied amongst species, but always A=T and G=C
Term
Wilkins & Franklin
Definition
used x-ray diffraction analysis to determine that DNA had a spiral configuration and complementarity w/in the structure
Term
Watson & Crick
Definition
concluded that DNA is a double helix with bases of antiparallel chains pairing via H-bonds
Term
Watson & Crick published their findings in ______________.
Definition
Nature, April 1953
Term
Semi-conservative model of DNA replication
Definition
proposed by Watson & Crick, each helix composed of one original and one entirely new strand
Term
Conservative Model of DNA Replication
Definition
newly synthesized and original helices are separate
Term
Dispersive model of DNA replication
Definition
new and original bases are interspersed throughout each strand
Term
Meslson & Stahl
Definition
grew labelled DNA on unlabelled medium, then centrifuged the DNA. Yielded hybrid DNA and labelled DNA.
Ruled out conservative model.
Repeated experiment to yield half hybrid and half unlabelled.
Ruled out dispersive model.
Term
Kornberg
Definition
isolated DNA polymerase from E. Coli and combined it with equal amts of 4 nucleosides and primer
Term
True or False: 2 DNA strands which are complementary will have the same base pair ratio, but not not necessarily the same purine/pyrimidine ratio
Definition
True
Term
True or False: A ssDNA will have the same base pair ratio as its double helix and will also have the same purine/pyrimidine ratio
Definition
False; the PP ratio may differ
Term
True or False: 2 identical strands of DNA will have the same base pair and purine/pyrimidine ratios
Definition
TRUE
Term
Nearest Neighbor Analysis Steps
Definition
1. Label deoxyribonucleosides w/ 32P
2. Use each in an in vitro DNA synth
3. Treat product DNA w/ spleen diesterase
4. Determine frequency of labelled phosphates transfer to a nucleotide
Corroborated complementarity and opposite polarity of strands
Term
Classifications of Nucleases
Definition
1. By Substrate
2. By ester bond
3. BY manner of attack
Term
Exonuclease
Definition
attacks only free end of DNA chain
Term
Endonuclease
Definition
cleaves interior bonds of DNA chain
Term
3' nucleases
Definition
cleave at the 3' end of the ester bond
Term
Cairns-autoradiography
Definition
1. Label E. Coli w/ tritiated thymidine
2. Extract DNA
3. Cover w/ photographic emulsion
4. Analyze radiographs
Confirmed replication fork
Term
Okazaki
Definition
1. Label E. Coli w/ tritiated thymidine
2. Submit to brief pulse of radioactivity
3. Isolate and denature DNA
4. Subject to density gradient centrifugation
Discovered that DNA assembled in short gragments
Term
DNA Ligase
Definition
links preformed strands of DNA; follows polymerase I to attach replacement strands
Term
DNA polymerase I
Definition
removal & replacement of RNA primers from growing DNA strand
Term
DNA Polymerase II
Definition
involved in helical repair
Term
DNA Polymerase III
Definition
primary replicating enzyme responsible for chain extension and proofreading
Term
DNA Primase
Definition
produces short strand of primer RNA using DNA as template
Term
Initiator protein (dnaA protein)
Definition
binds at beginning of replication site
Term
DNA helicase (dnaB protein)
Definition
unwinds DNA double helix
Term
DNA Helicase (reg proteins)
Definition
force strands apart at replication fork
Term
Topoisomerase I
Definition
removes kinks or supercoils for one strand
Term
Topoisomerase II
Definition
removes kinks or supercoils from both strands
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