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Molecular Cell Biology-Test 1
The first set of notes' flashcards.
92
Biology
Undergraduate 3
08/22/2012

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Term
Do egg and sperm cells contain the same amount of nuclear DNA?
Definition
yes; just a different amount of cytoplasm.
Term
Does a red blood cell replicate?
Definition
No; there is no nucleus in a red blood cell
Term
Which types of RNA are never translated?
Definition
ribosomal RNA and tRNA
Term
Why does a virus attack other cells?
Definition
Because the virus cannot express its own genetic information; it needs to hijack a cell that can express the information for the virus
Term
What element was NOT included in the Miller-Urey experiment, and why?
Definition
oxygen; because primordial earth would not have oxygen in the atmosphere until the plant kingdom evolved to include photosynthesis.
Term
what discovery made in 1981 changed the way the world saw RNA?
Definition
that some RNA was catalytic!
Term
what can catalytic RNA do?
Definition
-remove portions of its own sequence
-connect RNA together
-catalyze its own replication
-catalyze peptide bonds among proteins
Term
why is RNA unstable in the cell?
Definition
because the cytoplasm contains enzymes that are capable of destroying RNA :(
Term
Why is RNA single stranded instead of double stranded?
Definition
"because the cell makes it that way"
...how informative!
Term
Why are cells so small?
Definition
SA to V ratio; a larger cell cannot communicate as efficiently with its environment, because it has a SMALL surface area to volume ratio.
Term
all cells are basically the same in ____?
Definition
chemical composition
Term
Stanley Miller's experiments led to the creation of ___?
Definition
at first: simple organic molecules.
after successive rounds: amino acids, simple acids, and aldehydes
Term
What is the relationship between a ribozyme and its substrate?
Definition
can either be two separate molecules, or two domains of the same molecule.
Term
how does RNA replicate itself?
Definition
1. catalyzes the polymerization of nucleotides to form a complementary sequence, using itself as the template
2.using the complementary sequence, creates another comp. sequence that is identical to original sequence.
Term
order of RNA based system -> present day
Definition
1. ribozymes
2. evolution of RNA's that can direct protein dynthesis
3. evolution of new enzymes that create DNA and make RNA copies from said DNA
Term
what would the first cell look like?
Definition
-phospholipid membrane (phobic in, phillic out)
- RNA inside the cell, instead of DNA
Term
what do prokaryotes lack?
Definition
nuclear envelope, organelles, cytoskeleton
Term
what is the distinguishing feature of a eukaryote?
Definition
having a nucleus/nuclear membrane
Term
T/F: Eukaryotes are the most diverse group of living things on the planet.
Definition
FALSE: prokaryotes are the most diverse. even when looking at colonies of the same species, minute difference can be found.
Term
what is a similarity between the kingdoms bacteria and archaea?
Definition
they lack a nucleus; translation and transcription can happen at the same time.
Term
T/F: the nucleus contains all of the DNA in the cell
Definition
FALSE: it contains most DNA. chloroplast and mitochondria also have DNA.
Term
what takes place in the mitochondria that cannot take place in a prokaryotic cell?
Definition
the electron transport chain
Term
how did organelles come to be inside of a cell?
Definition
endosymbiosis
Term
the exchange of materials with the cell and the outside world involves the ____?
Definition
plasma membrane, small vesicles, E.R, golgi body, and the lysosomes
Term
how did the eukaryote possibly evolve/come to be?
Definition
when a bacterial chromosome got attached to a plasma membrane of a cell and was enveloped by the cell and surrounded by an internal double membrane
Term
T/F: bacteria are not considered multicellular organisms
Definition
TRUE
Term
T/F: the genomes of chloroplasts and mitochondrion are closer to porkaryotes than eukaryotes.
Definition
TRUE
Term
what is the evidence for endosymbiosis?
Definition
1. organelles have their own DNA
2. organelles resemble present-days prokaryotes
3. organelles have a similar DNA sequence to prokaryotes
4. organelles can divide independently of the cell
5. organelles have a double membrane
Term
which organelle contains multiple copies of its genome and can divide like bacteria?
Definition
mitochondria
Term
the human mtDNA contains how many genes?
Definition
37
Term
can chloroplast and mitochondria live outside of the cell?
Definition
NO; because over time, the cells have taken some DNA from the organelles and moved it to the nucleus of the cell. :(
Term
T/F: the presence of organelles defines a cell and eukaryotic or prokaryotic
Definition
FALSE; only the presence of a nucleus defines a cell
Term
what does it mean when the cell has no mitochondria?
Definition
it is anaerobic
Term
do colonies of cells have division of functions?
Definition
nope
Term
definition of multicellularity:
Definition
division of function in a permanent way
Term
the life cycle of the weird fungi thing went in between which styles?
Definition
unicellular and colonial
-haploid the whole time via mitosis
Term
epithelial cells:
Definition
bound by tight junctions and form sheets that cover body services and form the lining of internal organs
Term
connective tissues:
Definition
adipose, muscle and cartilage, fibroblasts
Term
T/F: neurons, like every other cell, go through the cell cycle many times
Definition
FALSE: go through once, then never return
-"O" phase
Term
what are the three types of muscle cells?
Definition
skeletal, muscular, smooth
Term
what two types of cells generate electrical activity?
Definition
muscle and neurons
Term
what distinguishes living cells from other non-living cells?
Definition
-cells are highly complex and organized
-cells posses a genetic program and the means to use it
-cells are capable of producing more of themselves
-cells are capable of acquiring and utilizing energy
-cells carry out a variety of chemical reactions
-cells engage in numerous mechanical activities
-cells are able to respond to external stimuli
-cells maintain their complex state by constant self-regulation
Term
sugars form:
Definition
polysaccharides
Term
fatty acids form:
Definition
fats, lipids, and membranes
Term
amino acids form:
Definition
proteins or polypeptides
Term
nucleotides form:
Definition
nucleic acids
Term
Which is spontaneous, hydrolysis or dehydration, and why?
Definition
Hydrolysis; because you go from 1 molecule to 2= more order to less order.
Term
the condensation of two monosaccharides results in what type of bond?
Definition
glycosidic
Term
what are the components of a fatty acid?
Definition
hydrophilic carboxylic acid head, and a hydrophobic hydrocarbon tail
Term
how are triacylglycerols created?
Definition
fatty acids are ester linked to glycerol
Term
what does unsaturated mean?
Definition
a C-C bond
Term
T/F: saturated fatty acids tend to form aggregates and deposits inside blood vessels
Definition
true, because they cannot bend and mesh with each other
Term
which types of unsaturated fatty acids to not form aggregates?
Definition
cis; because they bend with each other
Term
elaidinisation?
Definition
going from a cis unsat. fatty acid to a trans unsat. fatty acid
Term
how do you form a phospholipid?
Definition
two -OH groups in glycerol are linked to fatty acids while the third -OH group is linked to a phosphoric acid
-the phosphate group is linked to a small polar group(an alcohol)
Term
biological membranes typically contain:
Definition
one saturated and one unsaturated fatty acid
Term
what do saturated fatty acids to for the membrane?
Definition
make it less fluid, due to aggregation
Term
what do cis unsaturated fatty acids do for the membrane?
Definition
reduce membrane strength because they do not aggregate
Term
in what physical state would you find a saturated fatty acid?
Definition
solid state
Term
T/F: membrane creation is NOT spontaneous
Definition
Term
what is the distribution of macromolecules in a cell?
Definition
mainly proteins
Term
which is there more of in a cell, rna or dna? why?
Definition
rna; because rna is the biproduct of gene expression
Term
what types of bonds are used to form macromolecules?
Definition
covalent
Term
what makes up an amino acid?
Definition
amino group, carboxyl group, side chain all centered around a carbon
Term
what type of bond holds a polypeptide together?
Definition
peptide bond
Term
what type of bond defines the structure of a protein?
Definition
noncovalent bonds
Term
in a folded polypetide, _________ side chain tend to cluster at the core of the protein and away from the aqueous surrounding, leaving the ______ and charged side chains at the surface.
Definition
nonpolar/polar
Term
secondary structures can be what kind of structure?
Definition
alpha helix or beta sheet
Term
proteins are synthesized as:
Definition
polypeptides
Term
protein maturation involves:
Definition
-correct folding
-proteolytic cleavage
-chemical modifications
-quaternary structure
-association with cofactors
Term
T/F: each step in protein synthesis cannot be controlled.
Definition
FALSE, each step can be a target for control (gene expression)
Term
what is the role of a chaperone?
Definition
to keep the protein unfolded until it is completely formed.
Term
______ bonds form between adjacent cysteine residues.
Definition
disulfide bonds
Term
what are elastin fibers?
Definition
a rubberlike elastic meshwork present in the extracellular matrix of some cell types
-allows tissues like skin, arteries, lungs to stretch and recoil without tearing
Term
what is a denaturant?
Definition
something that can unfold and denature a polypeptide by breaking non-colvalent interactions between amino acids
Term
_____ are necessary to break disulfide bonds
Definition
reducing agents
Term
urea is produced in the ____ of mammals as a way to excrete _______. It can break __________ interactions between amino acids.
Definition
liver, ammonia, noncovalent
Term
what are fibrillar collagens and what are they built of?
Definition
major structural proteins of connective tissues; built of triple helices of procollagen polypeptides
Term
what is the regulation of gene expression?
Definition
the regulation of amount of protein produced by the cell by limiting transcription and/or translation
Term
what is control of protein function?
Definition
the protein is created but the activity is restricted according to the needs of the cell
Term
what is allosteric regulation?
Definition
a change in the conformation of a protein that effects its activity due to the binding of its regulatory molecule (the end product of a pathway)
Term
what is allosteric inhibition?
Definition
when the ligand alters the enzyme *****
Term
what is necessary for the activation or inactivation of many proteins?
Definition
phosphorylation
Term
what do protein kinase enzymes do?
Definition
transfer a phosphate group from ATP to proteins
Term
what two types of protein kinases are used in phosphorylation?
Definition
serine/threonine, and tyrosine
Term
what are protein phosphatases?
Definition
enzymes that remove phosphate groups from phosphorylated proteins
Term
what is ubiquitin?
Definition
a small protein that is attached to a target protein and is a label for regulation or destruction
Term
what does mono-ubiquitylation result in?
Definition
histone regulation
Term
what does multi-ubiquitylation result in?
Definition
endocytosis
Term
what does poly-ubiquitylation result in?
Definition
proteosomal degradation or DNA repair
Term
what happens to the ubiquitins when the protein has been degraded?
Definition
they are recycled by the proteosome
Term
describe the process of ubiquitylation.
Definition
1. ubiquitin ligase attached ubiquitin to the protein
2. the cap portion of the proteosome recognizes the ubiquitin and grabs it
3. ubiquitins are removed and recycled
4. the proteosome degrades the target protein by several ATP-dependent steps
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