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Molecular Biology 1 - 4
Molecular Biology
17
Biology
Undergraduate 1
02/15/2006

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Term
DNA Gyrase (Topoisomerase) & DNA Helicase
Definition
unwinds DNA to make available each strand separately
Term
SSBs
Definition
stabilize the separated strands and prevent the DNA molecule from becoming wound again
Term
RNA Primase
Definition
creates an RNA primer which binds to the 3' end of the DNA strand
Term
DNA Polymerase III
Definition
- binds at the RNA Primer
- moves 3' to 5' synthesizing the new DNA strand 5' to 3'
- proofreads and edits if required
Term
Editting RNA
Definition
- DNA Polymerase III must use its exonuclease function
- EXO means that it occurs externally or at the end of the strand rather than within the strand
- NUCLEASE means degrades or undoes the bond between the two nucleotides
Term
Editting RNA
Definition
- DNA Polymerase III must use its exonuclease function
- EXO means that it occurs externally or at the end of the strand rather than within the strand
- NUCLEASE means degrades or undoes the bond between the two nucleotides
Term
DNA Polymerase I
Definition
Replaces RNA Primers with DNA
Puts the lagging chain together by filling in the gaps
Term
DNA Ligase
Definition
creates phosphodiester bonds
Term
DNA Synthesis (Chain Elongation)
Definition
- Nucleotides come into the new DNA strand as Nucleotide triphosphate
- The first phosphate group of the nucleotide triphosphate binds with the 3’hydroxyl group displacing the remaining two phosphates creating a phosphodiester bond
Term
Phosphodiester bond in DNA
Definition
- phosphodiester bond: phosphor group is a diester linkage because there is a combination of an ester and an alcohol
- the acid is phosphoric acid
- two alcohol groups on either sugar ring
Term
Thymine dimer
Definition
- means there are two thymines occuring right next to each other on the same strand and the DNA molecule is arranged in such a way that a bond can be formed within these two ringed systems
Term
DNA Damage
Definition
- thymine dimer creates a bulge and this confuses DNA Polymerase III during replication
- this may result in a mutation
- this is why we want to remove it
Term
Ribosomal RNA (rRNA)
Definition
comes in various subunits of various sizes which have different masses with different numbers of nucleotides
Term
Transfer RNA (tRNA)
Definition
constant lengths
Term
Messenger RNA (mRNA)
Definition
comes in variable lengths because every protein has a different amount of information is required to synthesize a protein or enzyme
Term
Promotor site on DNA
Definition
segment of DNA where the RNA Polymerase binds
Term
Operator site on DNA
Definition
binding site of nuclear regulatory protein
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