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Microbiology
2/22/10 Clinical Correlation 3
45
Medical
Graduate
02/22/2010

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Cards

Term
What are the types of respiratory tract infections? What, in general are they usually caused by?
Definition

Otitis Media

Rhinitis

Sinusitis

Pharyngitis

Bronchitis

 

Usually caused by viruses

Term
Describe the presentation and etiology, and treatment of rhinitis.
Definition

Presentation: Presents with a runny nose, a cardinal symptom of the common cold. Inflammation of nasal mucosa, may be accompanied by sinusitis, pharyngitis, headache and constitutional symptoms.

Etiologies: almost always due to a virus (Rhinovirus or Coronavirus) or to non-infectious causes (such as allergies).

Treatment: Symptomatic only. Generally antibiotics can be withheld.

Term
Describe the presentation, etiology, and treatment of sinusitis.
Definition

Presentation: Patients with a cold usually have some degree of sinusitis, inflammation of the sinuses, may have yellow or green nasal discharge but this does NOT distinguish viral from bacterial etiologies.

Bacterial etiologies may have facial pain/tenderness and high fever.

Etiologies: usually viral (Rhinovirus), some bacterial infections (most commonly Strep pneumoniae but also Haemophilus influenzae).

Term
Decribe the usual presentation and etiology of otitis media?
Definition

Presentation: middle ear infection, very common in kids. May accompany the common cold.

Etiologies: Usually viral but bacterial infections (Strep pneumoniae or Haemophilus influenzae) may occur

Term
Describe the usual presentation and etiologies of pharyngitis.
Definition

Presentation: inflammation of the pharynx/tonsils. Sore throat.

Etiologies: usually due to viruses (Rhinovirus, Coronavirus), but Group A Streptococcus (a.k.a. Streptococcus pyogenes) is most common bacterial cause and needs to be excluded in isolated pharyngitis. Important to note that 1/3 people are colonized by Group A strep without symptoms, so if you find Group A strep it's not necessarily the cause of the sore throat.

 

Term
Describe the usual presentation and etiology of acute bronchitis.
Definition

Presentation: cough, typically productive of sputum. May sometimes be associated with wheeze (bronchospasm).

Etiologies: in healthy people usually viral--rhinovirus, adenovirus, influenzavirus. When due to bacteria, Strep pneumonia or Haemophilus influenzae are most common.

Term
Describe the presentation and usual etiology of acute exacerbations of chronic bronchitis.
Definition

Presentation: patients with heavy smoking histories may develop chronic bronchitis. Productive cough year round.

Etiologies: Viral or bacterial infections may cause exacerbations (acute on chronic). Bacterial etiologies are usually Strep pneumoniae, Haemophilus influenzae, and Moraxella catarrhalis.

Term
What are constitutional symptoms?
Definition
Symptoms that can affect many different symptoms in the body (e.g. malaise, fever, chills).
Term
What should you think about if a patient has chronic sinusitis?
Definition
There may be an anaerobic bacterial etiology/component (because with chronically blocked sinuses air is not getting in to the sinuses.
Term
Shape and Gram stain for Strep pneumoniae?
Definition
Gram +ve cocci.
Term
Gram stain for Haemophilus influenzae?
Definition
Gram -ve.
Term
Gram stain for Moraxella catarrhalis?
Definition
Gram -ve
Term
Who is at risk to develop hospital acquired pneumonia? What are the usual etiologies?
Definition

At risk: debilitated, neurologically impaired patients may develop aspiration pneumonia (drunks, etc).

Patients in ICU who are mechanically ventilated.

Etiologies: MRSA and extended spectrum beta-lactamases producing Gram -ve rods for VAP (didn't say about the debilitated ppl)

Gram -ve rods: Pseudomonas aeruginosa, Acinetobacter spp., Enterobacter cloacae, Klebsiella pneumoniae.

Staphylococcus aureus (Gram +ve cocci)

Term
Shape and gram stain of Strep pyogenes (Group A strep)?
Definition
Gram +ve cocci
Term
Describe the presentation, usual etiologies, and treatment of influenza.
Definition

Presentation: sudden onset of chills, accompanied by severe muscle aches (like you got hit by a train), fever, and cough. Can isolate influenza virus from nose or pharynx.

Etiologies: influenza virus (A or B)

Treatment: specific anti-influenza drugs available, but only effective if given in the first 36-48 hours are first onset of symptoms.

Term
What is cystitis?
Definition
inflammation of the bladder
Term
What is pneumonia? What does it look like on a chest x-ray?
Definition

Infection of the lower airways/alveoli (as opposed to an upper respiratory infection).

Visible as an "inflitrate" or "consolidation" of the lung on CXR.

Term
Describe the usual presentation and etiologies of community acquired pneumonia.
Definition

Presentation: cardinal symptoms: productive cough, pleuritic chest pain, shortness of breath, fever.

Etiologies: Streptococcus pneumonia (MOST COMMON BY FAR)

Haemophilus influenzae, Moraxella catarrhalis (COMMON)

Chlamydophila pneumoniae, Legionella pneumophila, Mycoplasma pneumonia (ATYPICAL).

Term
What is dysuria?
Definition
burning or stinging on passing urine
Term
What is acute pyelonephritis? Common presentation and etiologies?
Definition

It's inflammation of the kidney (the upper urinary tract). May result from inadequately treated cystitis (inflammation of the bladder). Called a complicated UTI.

Presentation: fever, flank pain, in addition to urinary tract symptoms.

Etiologies: CA pyelonephritis most often caused by E. coli

Catheterization can also cause, because it provides a hospitable habitat for:

E. coli, Enterococcus faecalis, Proteus mirabilis, Candida albicans.

Treatment: remove catheter is usually all that's needed.

Term
Describe the common presentation and  etiologies of cystitis.
Definition

Cystitis is a type of UTI (lower tract, inflammation of the bladder).

Presentation: very common in women, dysuria, urinary frequency.

Etiologies: In young women, Escherichia coli (GNR) is by far most common. Also get Staph saprophyticus (GPC).

Term
What are the most common causes of CA diarrhea?
Definition

Bacteria: Salmonella spp, Campylobacter spp., Shigella spp., and E. coli (all GNR)

Protozoa: Giardia lamblia, Cryptosporidium

Viruses: Rotavirus, Norovirus

Term
How do patients with severe sepsis typically present?
Definition
low blood pressure, high heart rate, cold mottled extremeties, confusion, and decreased production of urine.
Term
What are possible causes of bacteremia? (I have 3 listed here)
Definition

1. a pneumonia or kidney infection moves into blood.

2. vascular lines provide ready access for skin organisms to get into the blood. Usu. Staph aureus or coagulase negative staphylococci. For femoral lines watch out for Gram -ves.

3. Prolonged bacteremia is probably from an endovascular source--bacteria attach to intravascular device (catheter, pacemaker,heart valve). Staph aureus and Streptococci are most likely pathogens in this case.

Term
What is encephalitis?
Definition
Inflammation of the brain.
Term
What is meningitis?
Definition
Inflammation of the meninges.
Term
What is inflammation of the brain and meninges called?
Definition
meningoencephalitis
Term
What are the most important etiologies of encephalitis?
Definition

Usually viral:

Herpes simplex virus

Vector borne infections (e.g. West Nile virus)

Term
Usual presentation etiologies, and treatment of meningitis?
Definition

Presentation: severe headache and neck stiffness.

Etiologies: Neisseria meningitidis, Streptococcus pneumonia, Listeria monocytogenes, and enteroviruses.

Treatment: Make sure you cover N. meningitidis, S. pneumonia, and L. monocytogenes when you treat empirically.

*Note: do a spinal tap. if it's cloudy w/ neutrophils, think N. meningitidis and S. pneumonia. If it's clear w/ lymphocytes, think and enterovirus.

Term
Gram stain for Neisseria meningitidis?
Definition
Gram -ve.
Term
Gram stain and shape of Listeria monocytogenes?
Definition
Gram +ve rods.
Term
What are the categories of STIs? What are the most important etiologies of each category?
Definition

Those that cause:

1. urethritis (Chlamydia trachomatis and Neisseria gonorrhoeae)

2. genital ulcers (herpes simplex virus and syphilis (Treponema pallidum)

3. genital warts (human papillomavirus).

4. Systemic viral infections (HIV, Hep B, Hep C)

Term
What type of STI is Pelvic Inflammatory Disease (PID)? Common presentation and etiologies?
Definition

It's a urethritis.

Presentation: Men: penile discharge, dysuria.

Women: vaginal discharge, dysuria, abdominal pain. Most often asymptomatic.

Etiologies: Neisseria gonorrhoeae (GN), Chlamydia trachomatis.

Term
Gram stain for Neisseria gonorrhoeae?
Definition
GN
Term
If you've got a genital ulcer, how can you tell the difference between herpes simplex virus (HSV) and Syphilis (Treponema pallidum)?
Definition
HSV is painful, while Syphilis is painless.
Term
If you've got a patient with a T-cell deficiency, what opportunistic infections do you need to worry about?
Definition

Fungi and yeasts: Pneumocystis jarovecii, Candida, Cryptococcus.

Bacteria: Mycobacteria

Viruses: CMV

Parasites: Toxoplasmosa

Term
What is the most common cause of HA diarrhea?
Definition
Clostridium difficile, though many develop diarrhea as side effect of medications such as laxatives and antibiotics.
Term
Difference between dermatitis and cellulitis?
Definition
Dermatitis is more superficial. With cellulitis, when you push on the skin, it hurts.
Term
Common etiologies of dermatitis?
Definition

Remember this is very superficial inflammation of the skin.

Etiologies: non-infectious (allergic rxns, excema)

infectious: dermatophytes (Tinea spp) and Candida spp.

Term
What are the common etiologies of cellulitis?
Definition

Superficial cellulitis: Streptococcus pyogenes (Group A Strep, GPC), Staphylococcus aureus (GPC) NOT Staph epidermidis.

Skin abscess: Staph aureus (NOT S. epidermidis)

Systemic Infections: have manifestations in skin sometimes. E.g. infective endocarditis, Pseudomonas aeruginosa bacteremia, and disseminated fungal infections)

Term
When you've got a chronic ulcer (like in a diabetic) what do you want to think about 1st, 2nd, 3rd in terms of etiology?
Definition

1st: GPCs (Staph/Strep)

2nd: GNs (E. coli) and Enterococcus (CPC)

3rd: resistant GNs (Pseudomonas).

Term
If you have a patient with SLE or some other complement deficiency, what opportunistic infections do you need to worry about?
Definition
Encapsulated organisms: Strep. pneumoniae (GPC), Haemophilus influenzae (GN), and Neisseria meningitidis (GN).
Term
If you have a patient with liver cirrhosis or asplenia, what opportunistic infections do you need to worry about?
Definition
Encapsulated organisms: Strep. pneumoniae (GPC), Haemophilus influenzae (GN), and Neisseria meningitidis (GN).
Term
If you have a patient with Chronic granulomatous disease or some other neutophil dysfunction (incl. neutropenia), what opportunistic infections do you need to worry about?
Definition
Catalase positive organisms: Aspergillus, Pseudomonas aeruginosa (GNR), Staph. aureus (GPC).
Term
If you have a patient with a B cell deficiency (multiple myeloma, common variable immuno-deficiency, IgA deficiency), what opportunistic infections do you need to worry about?
Definition

Strep. pneumo (GPC), Haemophilus influenzae (GN), Neisseria meningitidis (GN).

 

For an IgA deficiency Giardia.

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