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Microbiology
chapters 22-31
225
Biology
Undergraduate 3
04/26/2007

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Term
adaptive immunity or antigen specific immunity
Definition
the acquired ability to recognize and destroy an individual pathogen or its products and relies on previews exposure to the pathogen or its products.
Term
antibody
Definition
a soluble protein produced by B cells that interacts with antigen; also called immunoglobulin
Term
antibody mediated immunity (humoral immunity)
Definition
immunity resluting from dierect interaction with antibodies
Term
antigen
Definition
a molecule capable of interacting with specific components of the immune system
Term
antigenic determinant (epitope)
Definition
that portion of an antigen that is reactive with a specific antibody or t cell receptor
Term
antigen-presenting cell
Definition
a macrophage, dendritic cell or B cell that presents antigens to t cells
Term
autoantibody
Definition
an antibody that reacts to self antigens
Term
B cell
Definition
a lymphocyte that has immunoglobulin surface receptors, produces immunoglobulin and may present antigens to T cells
Term
cell mediated immunity
Definition
immunity resulting from direct interaction with antigen specific T cells
Term
class I MHC protein
Definition
antigen-presenting molecule found on all nucleated vertebrate cells
Term
class II MHC protein
Definition
antigen presenting molecule found on all nucleated vertebrate cells
Term
complement
Definition
a series of proteins that react in a sequential manner with antibody-antigen complexes to amplify or potentiate antibody activity
Term
cytokine
Definition
a soluble immune response modulator produced by leukocyte
Term
dendritic cell
Definition
a type of leukocyte having phagocytic and antigen presenting poroperties, found in lymph nodes and spleen
Term
domain
Definition
a region of protein having a defined structure and function
Term
hapten
Definition
a low molecular weight molecule that combines with specific antibodies but that is incapable of eliciting an immune resposne by itese.f
Term
hypersensitivity
Definition
an immune response leading to damage to host tissues
Term
immunity
Definition
the ability of an organism to resist infection
Term
immunization (vaccination)
Definition
inoculation of a host with inactive or weakened pathogens or pathogen products to stimulate protective immunity
Term
immunogen
Definition
a molecule capable of eliciting an immune response
Term
immunoglobulin
Definition
a soluble protein produced by B cells and plasma cells that interacts with antigens; also called antibody
Term
inflammation
Definition
a nonspecific reaction to noxious stimuli such as toxins and pathogens characterized by redness, swelling, pan and heat, usually localized at site of infection
Term
innate immunity
Definition
a nonspecific immunity is the noninducible ability to recognize and destroy an individual pathogen or its products and does not rely on previous exposure to a pathogen or its products.
Term
interleukin
Definition
a soluble cytokine or chemokine secreted by lekocytes
Term
lymph
Definition
a fluid similar to blood which lacks red blood cells and travels through a separate circulatory system containing lymph nodes
Term
lymphocyte
Definition
a subset of nucleated cells found in the blood that are involved in the immune response
Term
macrophage
Definition
a type of large leukocyte found in tissues that has phagocytic and antigen presenting capabilities
Term
macrophage
Definition
a type of large leukocyte found in tissues that has phagocytic and antigen presneting capabilities
Term
major histocompatability complex MHC
Definition
a genetic complex responsible for encoding several cell surface proteins important in antigen presentation
Term
memory (immunologic memory)
Definition
ability to rapidly produce large quantities or specific immune cells ore antibodies after subsequent exposure to a previously encountered antigen
Term
memory B cells
Definition
long-lived cells responsive to an individual antigen
Term
natural killer cell
Definition
a specialized lymphocyte that recognizes and destroys foreign cells or infected host cells in a non-specific manner
Term
neutrophil (PMN)
Definition
a type of leukocyte exhibiting phagocytic properties, a granular cytoplasm and mutilobed nucleus
Term
pathogen associated molecular pattern
Definition
unique structural components of a microbe or virus recognized by a pattern recognition molecule
Term
pattern recognition molecule
Definition
a membrane bound protein that recognizes a pathogen associated molecular pattern such as a unique component of a microbial cell surface structure
Term
phagocyte
Definition
one of a group of cells that recognizes ingests and degrades pathogens and pathogen products
Term
plasma
Definition
the liquid portion of hte blood with cells removed and clotting proteins deactivated.
Term
plasma cell
Definition
differentiated B cell that produces large amounts of antibodies
Term
primary antibody response
Definition
antibodies made on first exposure to antigen mostly of the IgM class
Term
secondary antibody response
Definition
antibody made on subsequent exposure to antigen, mostly of the IgG class
Term
serology
Definition
the study of antigen-antibody reactions in vitro
Term
serum
Definition
the liquid portion of the blood with clotting proteins and cells removed
Term
specificity
Definition
the ability of the immune response to interact with individual antigens
Term
stem cell
Definition
a cell that can develop into a number of final cell types
Term
superantigen
Definition
a pathogen product capable of eliciting an inappropriately strong immune response by stimulating greater than normal numbers of T cells
Term
T cell
Definition
a lymphocyte responsible for antigen specific cellular interaction
Term
Tc cells
Definition
Tc cytotoxic T cells
Term
Th cell
Definition
Th helper T cells. Th cells are further subdivided into Th1 inflammatory cells and Th2 helper cells which aid B cells in antibody formation
Term
T cell receptor
Definition
antigen specific receptor protein on the surface of T cells
Term
tolerance
Definition
inability to produce an immune response to specific antigens
Term
toll-like receptor
Definition
one of a family of pattern recognition molecules found on phagocytes that recognize a pathogen associated molecular patter
Term
toxoid
Definition
an attenuated form of a toxin that retains immunogenicity while losing toxicity
Term
vaccine
Definition
an inactivate or weakened pathogen or innocuous pathogen product used to stimulate protective immunity
Term
agretope
Definition
the portion of a processed antigen that is recognized by MHC protein
Term
anergy
Definition
inability to produce an immune response to specific antigens due to neutralization of effector cells
Term
chemokine
Definition
a small soluble protein produced by a variety of cells that modulates inflammatory reactions and immunity in target cells
Term
clonal deletion
Definition
for t-cell selection in the thymus the killing of useless or self reactive clones
Term
clonal selection
Definition
each B or T cell produces copeies of itself when stimulated iwht antigen
Term
complementarity determinin region
Definition
a variation in amino acid sequence within the variable domains of immunoglobulins or TCRs providing most of the molecular contacts with antigen
Term
cytokine
Definition
a small soluble protein produced by a leukocyte taht modulates inflammatory reactions and immunity in target cells
Term
epitope
Definition
the portion of an antigen that is recognized by an immunoglobulin or a T cell receptor
Term
HLA
Definition
human leukocyte antigen, the MHC of humans
Term
hyper variable region
Definition
variation in amino acid sequence within the variable domains of immunoglobulins or TCRs providing most of the molecular contacts with antigen
Term
motif
Definition
a conserved amino acid sequence found in all peptide antigens that bind to a given MHC protein
Term
negative selection
Definition
in T cell selection, T cells that interact with self antigens in the thymus are deleted.
Term
polymorphism
Definition
the occurrence of multiple alleles at a locus in frequencies that cannot be explained by the occurrence of recent random mutations
Term
positive selection
Definition
in T-cell selection, T cells that interact with self MHC protein in the thymus are stimulated to grow and develop
Term
somatic hypermutation
Definition
the mutation of immunoglobulin genes at rates higher than these observed in other genes
Term
T cell receptor
Definition
antigen specific receptor protein on the surface of T cells
Term
tolerance
Definition
inability to produce an immune response to a specific antigen
Term
toll-like receptor
Definition
a pattern recognition molecule found on phagocytes, structurally and functionally related to toll receptors in drosophila
Term
agglutination
Definition
reaction between antibody and particle bound antigen, resulting in visible clumping of the particles
Term
antibiogram
Definition
a report indicating the sensitivity of clinically isolated microorganisms to the antibiotics in current use
Term
bacteremia
Definition
the presence of bacteria in the blood
Term
differential media
Definition
growth media that allows identification of microorganisms based on phenotypic properties
Term
elisa
Definition
enzyme linked immunosorbent assay
Term
enriched media
Definition
the use of selected culture media and incubation conditions to isolate microorganism from natural samples
Term
enrichment culture
Definition
the use of selected culture media and incubation conditions to isolate microorganisms from natural samples
Term
fluorescent antibody
Definition
covalent modification of an antibody molecule with a fluoresent dye; the dye makes the antibody visible under fluorescent
Term
general purpose media
Definition
growth media that support the growth of most aerobic and facultatively anaerobic organisms
Term
immunoblot (western blot)
Definition
electrophoresis of proteins followed by transfer to a membrane and detection by addition of specific antibodies
Term
monoclonal antibody
Definition
antibody made by a single B cell clone
Term
neutralization
Definition
interaction of antibody with antigen that reduces or blocks biological activity of the antigen
Term
nucleic acid probe
Definition
an oligonucleotide of unique sequence used as a hybridization probe for identifying specific genes
Term
polyclonal antibodies
Definition
antibodies made by many different B cell clones
Term
precipitation
Definition
reaction between antibody and a soluble antigen resulting in a visible insoluble complex
Term
RIA
Definition
radioimmunoassay
Term
selective media
Definition
media that enhance the growth of certain organisms while retarding the growth of others due to an added media component
Term
sensitivity
Definition
the lowest amount of antigen that can be detected
Term
septicemia
Definition
blood infection
Term
specificity
Definition
the ability of an antibody to recognize a single antigen
Term
titer
Definition
in an immunological context, the quantity of antibody present in a solution
Term
acute
Definition
short term infection usually characterized by dramatic onset
Term
carrier
Definition
subclinically infected individual who may spread a disease
Term
chronic
Definition
long term infection
Term
common source epidemic
Definition
an epidemic resulting from infection of a large number of people from a single contaminated source
Term
emerging infection
Definition
infectious disease whose incidence has increased in the past 20 years or whose incidence threatens to increase in the near future
Term
endemic
Definition
disease constantly presnt usually in low numbers
Term
epidemic
Definition
the occurrence of a disease in unusually high numbers in a localized population
Term
epidemiology
Definition
the study of the occurrence distribution and control of diseases
Term
fomite
Definition
inanimate object that when contaminated with a viable pathogen can transfer the pathogen to a host
Term
herd immunity
Definition
resistance of a population to a pathogen as a result of the immunity of a large portion of the popoulation
Term
host to host epidemic
Definition
an epidemic resulting from person to person contact characterized by a gradual rise and fall in number of cases
Term
incidence
Definition
the number of cases of disease in a population
Term
morbidity
Definition
incidence of illness in a population
Term
mortality
Definition
incidence of death in a population
Term
nosocomial infection
Definition
hospital acquired infection
Term
outbreak
Definition
the occurrence of a large number of cases of a disease in a short period of time
Term
pandemic
Definition
a worldwide epidemic
Term
prevalence
Definition
the proportion or percentage of individuals in the population having a disease
Term
quarantine
Definition
the practice of restricting the movement of individuals with highly contagious serious infections to prevent spread of the disease
Term
reemerging infection
Definition
infectious disease thought to be under control that produces a new epidemic
Term
reservoir
Definition
site in which viable infectious agents remain and form which infection of individuals may occur
Term
surveillance
Definition
observation recognition and reporting of diseases as tey occur
Term
vector
Definition
a living agent that transfers a pathogen
Term
vehicle
Definition
nonliving source of pathogens that infect large numbers of individuals; common vehicles are food and water
Term
zoonosis
Definition
a disease that occurs primarily in animals but can be transmitted to humans
Term
antigenic drift
Definition
minor changes in antigens due to gene mutation in influenza virus
Term
antigenic shift
Definition
major changes in antigens due to gene reassortment in influenza virus
Term
cirrhosis
Definition
breakdown of the normal liver architecture resulting in fibrosis
Term
congenital syphilis
Definition
syphilis contracted by an infant from its mother during birth
Term
fusion inhibitor
Definition
a synthetic polypeptide that binds to viral glycoproteins, inhibiting fustion of viral and host cell membranes
Term
hepatitis
Definition
a liver inflammation commonly caused by an infectious agent
Term
jaundice
Definition
production and release of excess bilirubin in the liver due to destruction of liver cells resulting in yellowing of hte skin and whites of the eyes
Term
meningitis
Definition
inflammation of the meninges sometimes caused by neisseria meningitidis and characterized by sudden onset of headache, vomitting and stiff neck often prgressing to coma within hourse.
Term
meningococcemia
Definition
fulminant disease caused by n. meningitidis and characterized by septicemia, intravascular coagulation and shock
Term
non-nucleoside reverse transcriptase inhibitor
Definition
a non-nucleoside compound that inhibits the actoin of viral reverse transcriptase by binding directly to the catalytic site
Term
nucleoside reverse transcriptase inhibitor
Definition
a nucleoside analog compound that inhibits the action of viral reverse transcriptase by competing with nucleosides
Term
opportunistic infection
Definition
an infection usually observed only in an individual with a dysfunctional immune system
Term
protease inhibitor
Definition
a compound that inhibits the action of viral protease by binding directly to the catalytic site preventing viral protein processing
Term
rheumatic fever
Definition
an inflammatory autoimmune disease triggered by an immune response to infection by streptococcus pyogenes
Term
scarlet fever
Definition
characteristic reddish rash resulting from an exotoxin produced by streptococcus pyogenes
Term
sexually transmitted infection
Definition
an infection that is usually transmitted by sexual contact
Term
toxic shock syndrome
Definition
acute systemic shock resulting from a host response to an exotoxin produced by by staph aureus
Term
tuberculin test
Definition
a skin test for previous infection with mycobacterium tuberculosis
Term
viral load
Definition
a quantitative assessment of the amount of virus in a host organism, usually in the blood.
Term
ehrlichiosis
Definition
one of a group of emerging tick-transmitted diseases caused by rickettsias of the ehlrichia genus
Term
hanta virus pulmonary syndrome
Definition
an emerging acute viral disease characterized by respiratory pneumonia obtained by transmission of hantavirus from rodents
Term
lyme disease
Definition
an emerging tick-transmitted disease caused by the spirochete borrelia burgdorferi
Term
malaria
Definition
insect transmitted disease characterized by recurrent episodes of fever and anemia caused by the protozoan plasmodium spp., usually transmitted between mammals through the bite of the anopheles mosquito
Term
mycosis
Definition
infection caused by a fungus
Term
plague
Definition
an endemic disease in rodents caused by yersinia pestis that is occaisionally transferred to humans through the bite of a flea
Term
rabies
Definition
a usually fatal neurological disease caused by the rabies virus that is usually transmitted by the bite or saliva of an infected animal
Term
rickettsia
Definition
obligate intracellular parasite genus responsible for diseases including typhus rocky mountain spotted fever and ehrlichiosis.
Term
rocky mountain spotted fever
Definition
a tick transmitted disease caused by rickettsia rickettsii causing fever, headache, rash, and gastrointestinal symptoms
Term
sickle cell anemia
Definition
a genetic trait that confers resistance to malaria but causes a reduction in the efficiency of red blood cells by reducing oxygen binding affinity of hemoglobin
Term
thalasemia
Definition
a genetic trait that confers resistance to malaria but causes a reduction in the efficiency of red blood cells by altering a red blood cell enzyme
Term
tetanus
Definition
a disease involving rigid paralysis of the voluntary muscles caused by an exotoxin produced by clostridium tetani
Term
west nile fever
Definition
a neurological disease caused by west nile virus and transmitted by mosquito from birds to humans
Term
typhus
Definition
a louse-transmitted disease caused by rickettsia prowazekii causing fever, headache, weakness rash and damage to the central nercous system and internal organs
Term
aerobic secondary wastewater treatment
Definition
digestive reactions carried out by microorganisms under aerobic conditions to treat wastewater containing low levels of organic materials
Term
anoxic secondary wastewater treatment
Definition
digestive and fermentative reactions carried out by microorganisms under anoxic conditions to treat wastewater containing high levels of insoluble organic materials
Term
biochemical oxygen demand
Definition
the relative amount of dissolved oxygen consumed by microorganisms for complete oxidation of organic and inorganic material in a water sample
Term
chloramine
Definition
a chemical manufactured on site by combining chlorine and ammonia at precise ratios
Term
clarifier
Definition
reservoir in which the suspended solids of raw water are coagulated and removed
Term
coagulation
Definition
the formation of large insoluble particles from much smaller colloidal particles by the addition of aluminum sulfate and anionic polymers
Term
coliform
Definition
facultatively aerobic, gram-negative nonspore forming lactose-fermenting bacterium
Term
cyst
Definition
an infectious form of a protozoan parasite that is encased in a thick-walled chemically and physically resistant coating
Term
distribution system
Definition
water pipes storage reservoirs tanks and other means used to deliver drinking water to consumers or store it before delivery
Term
effluent water
Definition
treated wastewater discharged from a wastewater treatment facility
Term
filtration
Definition
the removal of suspended particles from water by passing it through one or more permeable membranes or media
Term
finished water
Definition
water delivered to the distribution system after treatment
Term
flocculation
Definition
the water-treatment process after coagulation that uses gentle stirring to cause suspended particles to form larger aggregated masses
Term
meningoencephalitis
Definition
invasion inflammation and destruction of brain tissue by the amoeba naegleria fowleri or a variety of other pathogens
Term
polymer
Definition
in water purification a chemical in liquid form used as a coagulant in the clarification process to produce flocculation
Term
potable
Definition
drinkable safe for human consumption
Term
primary wastewater treatment
Definition
physical separation of wastewater contaminants usually by separation and setting
Term
primary wastewater treatment
Definition
physical separation of wastewater contaminants usually by separation and setting
Term
raw water
Definition
surface water or groundwater that has not been treated in any way
Term
sediment
Definition
soil sand minerals and other large particles found in raw water
Term
sewage
Definition
liquid effluents contaminated with human or animal fecal material
Term
suspended solid
Definition
small particle of solid pollutant that resists separation by ordinary physical means
Term
tertiary wastewater treatment
Definition
physico-chemical processing of wastewater to reduce levels of inorganic nutrients
Term
turbidity
Definition
a measurement of suspended solids in water
Term
wastewater
Definition
liquid derived from domestic sewage or industrial sources which can not be discarded in untreated form into lakes or streams
Term
botulism
Definition
food poisoning due to ingestion of food containing botulinum toxin produced by clostridium botulinum
Term
fermentation
Definition
the anaerobic catabolism of organic compounds generally carbohydrates in the absence of an external electron acceptor
Term
food infection
Definition
disease caused by active infection resulting from ingestion of pathogen contaminated food
Term
food poisioning
Definition
disease caused by the ingestion of food that contains preformed microbial toxins
Term
food spoilage
Definition
a change in teh apperance smell or taste of a food that makes it unacceptable to the consumer
Term
irradiation
Definition
the exposure of food to ionizing radiation for the purpose of inhibiting growth of microorganisms and insect pests or to retard ripening
Term
listeriosis
Definition
gastrointestinal food infection caused by listeria monocytogenes that may lead to bacteremia and meningitis
Term
lyophilization
Definition
the process of removing all water from frozen food under vacuum
Term
non-perishable food
Definition
food of low water activity that has an extended shelf life an is resistant
Term
perishable food
Definition
fresh food generally of high water activity that has a very short shelf life due to potential for spoilage by growth of microorganism
Term
pickling
Definition
the process of acidifying food to prevent microbial growth and spoilage
Term
salmonellosis
Definition
enterocolitis caused by any of over 2000 variants of salmonella spp.
Term
semiperishable food
Definition
food of intermediate water activity that has a limited shelf life due to potential for spoilage by growth of microorganisms
Term
water activity
Definition
the availability o water for use in metabolic processes
Term
aspartame
Definition
a non-nutritive sweetener composed of te amino acids aspartate and phenylalanine that latter as a a methyl ester.
Term
beta lactam antibiotic
Definition
a member of a group of antibiotics including penicillin containing the four membered hetercyclic beta lactam ring
Term
biocatalysis
Definition
the use of microorganisms to carry out a specific chemical synthesis
Term
biosyntheti penicillin
Definition
production of a particular form of penicillin by suppling the organism with specific side chain precursors
Term
biotransformation
Definition
the use of microorganisms to carry out a chemical reaction that is more costly or not feasible non-biologically
Term
brewing
Definition
the manufacture of alcoholic beverages such as beer from the fermentation of malted grains
Term
broad spectrum antibiotics
Definition
an antimicrobial drug useful in treating a wide variety of bacterial diseases
Term
commodity chemical
Definition
a chemical such as ethanol that has low monetary value and is thus sold primarily in bulk
Term
distilled beverage
Definition
a beverage containing alcohol concentrated by distillation
Term
exoenzyme
Definition
an enzyme produced by a microorganism and then excreted into the environment
Term
extermozyme
Definition
an enzyme able to function in the presence of one or more chemical or physical extremes
Term
fermentor
Definition
the tank in which an industrial fermentation is carried out
Term
immobilized enzyme
Definition
an enzyme attached to a solid support over which substrate is passed and converted to product
Term
industrial microbiology
Definition
the large-scale use of microorganisms to produce products of commercial value
Term
natural penicillin
Definition
the parent penicillin structure produced by cultures of penicillium not supplemented with side chain precursors
Term
primary metabolite
Definition
a metabolite excreted during the growth phase
Term
protease
Definition
an enzyme that can degrade proteins by hydrolysis
Term
scale-up
Definition
conversion of an industrial process from a small laboratory set-up to a large commercial fermentation
Term
secondary metabolite
Definition
a metabolite excreted at the end of hte primary growht phase and into the stationary phase
Term
semisynthetic penicillin
Definition
a penicillin produced using components derived from from both microbial fermentation and chemical syntheses
Term
tetracycline
Definition
a member of a class of antibiotics containing the four membered naphthacene ring
Term
biotechnology
Definition
use of genetically engineered organisms to carry out defined chemical processes for industrial application
Term
cloning vector
Definition
a genetic element typically a plasmid or a bacteriophage into which genes can be recombined and erplicated
Term
dna fingerprinting
Definition
use of the techniques of genetic engineering to determine the origin of dna in a sample of tissue
Term
expression vector
Definition
a cloning that contains the necessary regulatory sequences to allow transcription and translation of cloned genes
Term
gene therapy
Definition
treatment of a disease caused bye a dysfunctional gene by introduction of a normally functioning copy of the gene
Term
genetically modified organism
Definition
an organism whose genome has been altered using genetic engineering
Term
integrating vector
Definition
a cloning vector that becomes integrated into a host chromosome
Term
molecular cloning
Definition
isolation and incorporation of of a fragment of dna into a vector where it can be replicated
Term
nucleic acid probe
Definition
a strand of nucleic acid that can be labeled and used to hybridize to a complementary molecule from a mixture of other nucleic acids
Term
reporter gene
Definition
a gene incorporated into a vector because the product it encodes is easy to detect
Term
reverse translation
Definition
the mental process of using a codon table an the amino acid sequence of a protein to obtain a possible sequence of the mrna or the gene that encoded the protein
Term
shuttle vector
Definition
a cloning vector that can replicate in two or more dissimilar hosts
Term
T-DNA
Definition
the segment of the agrobacterium Ti plasmid that is transferreed to plant cells
Term
Ti-plasmid
Definition
a plasmid in agrobacterium species capable of transferring genes from bacteria to plants
Term
transgenic organism
Definition
a plant or animal that stably asses on cloned DNA that has been inserted into it.
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