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Microbiology test 2
microbiology
86
Biology
Undergraduate 2
10/15/2012

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Term
Bacterial Growth and Growth Requirements
Definition
- Reproduce asexually by binary fission
- Time required for population to double – Generation time
- Average G.T. for bacteria is 20 to 30 minutes
- Doubling of population = logarithmic or geometric growth
Term
Logarithm of growth
Definition
1. Lag period of growth = 30 minutes (no increase)
2. Log period 12-24 hours
3. Stationary period 24-28 hours
4. Death or decline period of growth 48-96 hours
If spreads elsewhere graph starts over again

Acute infection – short generation time
Chronic infection – long generation time
Term
Some important bacterial growth requirements:
Definition
- temperature
- oxygen
-pH
- Nutritional requirements
-Enzymes
Term
Temperature
Definition
a. Enzymes are very temperature sensitive
i. Psychrophiles – cold loving – 5 degrees celcius – 20 , optimum 10-15 celcius
ii. Mesophiles - Moderate temperature loving bacteria 20 – 45 celcius optimum 37 celcius
• Refridgerate or freeze – cook food
iii. Thermophiles – heat lovers 35- 90 celcius optimum 55
Term
oxygen
Definition
a. Obligate anaerobes – need O2
b. Obligate anaerobes – can’t have O2
c. Facultative – live without or with O2
Term
pH
Definition
a. pH of human blood = 7.35 – 7.45 (slightly basic)
b. pH of human skin = 5-6
c. bacteria prefer 6.8 – 7.2
Term
Nutritional requirements
Definition
- light - phototroph
- chemical - chemotroph
- carbon , hydrogen , oxygen , nitrogen , potassium , phosphorus , sulfur etc.
- minerals
- vitamins
- water
Term
Chemicals (1-3)
Definition
1. If it can get energy from simple chemicals (hydrocarbons) = chemoautotroph
2. If it needs more complex energy sources (sugar, fats, proteins) = chemoheterotrophs
3. If it needs very complex energy sources (whole blood, tissue) = fastidious chemo heterotrophs
Term
Chemicals (4-6)
Definition
4. If it needs only living matter for energy = obligate parasite
5. Need only non living matter = obligate saprophyte
6. Can live on living or non living matter – facultative parasite (prefers non living) or facultative saprophyte (prefers living) (opposite of second word)
a. Most bacteria are facultative saprophyte
Term
Minerals
Definition
iron , zinc , calcium
Term
Vitamins
Definition
Niacin , riboflavin
Term
Enzymes
Definition
a. Catalyze chemical reactions (speed up)
b. Substrate (breakdown enzyme) products  (build up enzymes) cells parts
Catabolism + anabolism = metabolism
c. Substrate + enzyme  enzyme substrate complex  enzyme + products
Term
Enzymes 2
Definition
d. Enzymes are unchanged in a chemical reaction
e. Enzymes can be used over and over
i. Overtime they will wear out
f. Made of proteins  coded for by cell’s DNA
g. Usually end – “ase”
Term
Enzymes 3
Definition
h. Exoenzymes – work outside cell
i. Catabolic or anabolic
i. Constituative enzymes – always present
j. Adaptive enzymes – made as needed
k. Enzymes are specific
Term
Energy production in bacteria
Definition
- Energy – the ability to do work
- Phosphate = PO4 – P with 4 single bound O on each side
- ATP = ADP + P + energy
- Energy production = to produce energy and store it in bonds of ATP
Term
two forms of energy
Definition
potential and kinetic
Term
potential
Definition
o Potential energy – stored in ATP - Adenosine Triphosphate – or high energy transfer compound
 In bacteria most ATP +HETC are found on cell membranes
Term
kenetic
Definition
working
Term
Two methods of energy production
Definition
Respiration
Fermentation
Term
Respiration
Definition
1) Respiration – method of energy production using O2 (oxygen from air)
a. Involves glycolysis, krebs cycles , e- transport system (ETS)
Term
Fermentation
Definition
2) Fermentation – method of energy production without O2
a. Involves glycolysis only (no kerbs cycle , no ETS)
Term
Oxidation
Definition
when a chemical loses hydrogens + or e-
Term
Reduction
Definition
when a chemical gains hydrogens + or e-
o When oxidation and reduction occur energy is produced
Term
Electron Transport System
Definition
- Hydrogens and e- enter ETS for every 2 H and 2 e- that enter 2 ATP (+H2O) are produced. Final H2 + e-2 receptor is O2
- Takes place in bacterial cell membrane
Term
Glycolosis
Definition
- Glucose goes into glycolosis
- Two molecules of pyruvic acids are produced at the end
- Net of 8 ATP are produced in respiration
- Net of 2 ATP are produced in fermentation – there is no electron transport system in fermentation (there is no oxygen in fermentation) so we lose out of 6 ATP from the electric transport system
Term
Kreb Cycle
Definition
- Two pyruvic acids go into the Kerb cycle
- 30 ATP come from the kreb cycle – 38 total kerb+glycolosis
- CO2 is the waste product
- Takes place on the cell membrane
- The main function is to produce hydrogen and electrons
Term
DNA Replication
Definition
- Deoxyribonucleic acid
o Hereditary (genetic info) of all living cells
- Polynucleptode – made up of many nucleotides
- DNA nucleotides consist of :
o 1 molecule of a nitrogenous base
 4 possible bases :
• Purines – adenine and guanine
• Pyrimidines – cytosine and thymine
o 1 molecule of sugar = deoxyribose
o 1 phosphate group (PO4)
 Sequence of bases = code for protein productions (unique)
 2 strands of DNA are joined by bases:
• A+ T , C+G
• Each strand totally different codes
• Hydrogen bonds (weak +open easily)
• Form double helix to prevent separating + strength
Term
RNA
Definition
RNA = Ribonucleic Acid
- Protein synthesis
- Poly nucleotide
- Consists of :
o Nitrogenous base:
 Adenine , Guanine , Cytosine and Uracil
o Sugar – ribose
o Phosphate
Term
Three Differences from RNA to DNA
Definition
o Uracil instead of Thymine
o Ribose instead of Deoxyribose
o Single stand instead of double strand
- Three types of RNA
Term
Three types of RNA
Definition
o mRNA (messenger)
o tRNA (transfer)
o rRNA (ribosomal)
Term
DNA replication in a bacteria
Definition
- During binary fission
o Copies DNA and splits in 2
o DNA is the genetic code for protein synthesis in all living cells
 Deoxyribonucleic acid – DNA is in the form of 1 circular chromosomes
 DNA is a polynucleotide - building block polynucleotide
Term
DNA replication in a bacteria (1-4)
Definition
1) Circular DNA is cut by a specific enzyme and the DNA is made linear
2) 2 cut ends of the DNA attach to 2 sites on the membrane
3) As the DNA unwinds hydrogen bonds between bases break and the bases in each strand are exposed
4) New DNA nucleotides attach to the old bases
Term
DNA replication in a bacteria (5-8)
Definition
5) New phosphate –sugar backbone forms
6) 2 new double strands of DNA rewind
7) 2 new DNA molecules separate from the membrane
8) Reform into circles
15 – 20 minutes to occur
Term
Protein Synthesis in Bacteria
Definition
1) transcription
2) translation
Term
Transcription
Definition
a. copy (mRNA) of the DNA (gene) bases coding for 1 protein is made
b. copy then attaches to ribosome
Term
Translation
Definition
- Every prokaryotic cell gene begins : TAC and ends ACT
- 20 naturally existing amino acids therefore need a code for each = 20 codes
- Every 2 mRNA bases codes for 1 amino acid = every 3 called a codon
a. T-RNA attaches to an amino acid and transports the amino acid to the ribosome
b. Amino acids are then joined together to form a protein as determined by mRNA
- Every three m-RNA bases codes for 1 amino acid = codon
- AUG is the start codon
- UGA , UAA , UAG – nonsense codon – stop codon
Term
mRNA
Definition
- Every three m-RNA bases codes for 1 amino acid = codon
- AUG is the start codon
- UGA , UAA , UAG – nonsense codon – stop codon
Term
Double stranded tRNA
Definition
o amino acid attachment sight – at top
o anticodon – at bottom, pairs with codon on mRNSA
o left side binds to changing enzyme that pulls to amino acid
o right side binds to 50s ribosomal subunit
o for every codon there is an anticodon
o only enough room for 2 tRNAs in ribosome
 1st protein then placed on top of 2nd  forming protein
 Continue process until there is a stop codon, protein is complete and released to where it needs to go
 To make multiple of a protein , new ribosomes attach to mRNA
 When enough proteins are made mRNA stops ribosomes from copying,
• Ribosomes send nucleotides back to nucleus to be reused In copying other genes
Term
Mutations
Definition
- Change in the order of the DNA bases
- Change the mRNA bases
- Change the codon
- Possibly change the amino acid
- Possibly change the protein
o Spontaneous mutations – 1/10 (to the 6th) cells
o Induced mutations – 1/10 (to the 3rd) cells
Term
types of mutations
Definition
1) Substitutions – substitute 1 base in the DNA with another base
2) Deletion – removes a base in DNA but do not replace it
3) Addition – add a base in DNA without removing one
Term
Genetic Recombination in bacteria
Definition
- Exchange of DNA between 2 or more bacteria 3 methods
o Transformation – “naked DNA” passes from one bacteria to another
o Transduction – phage carries DNA from one bacteria to another
o Conjugation – DNA crosses F pili from one bacteria to another
Term
Example of transformation
Definition
Streptococcus pneumonia
- The leading cause of human pneumonia
- 2 strains of S. pneumonia
o Smooth strain – always makes a capsule
o Rough strain – never makes a capsule
- U tube experiment - smooth died but shot out DNA , transferred to rough strain, got gene for capsule and became smooth
Term
Example of Transduction
Definition
Streptococcus pyogenes
- Causes pharyngitis (strep throat)
- 2 strains
o Toxogenic strain – produces exotoxin called erythrogenic toxin – destroys red blood cells – scarlet fever
o Non toxogenic strain - cannot produce erythrogenic toxin
- Virus can break out of toxigenic strain, carries gene for toxin to non-toxigenic strain
Term
example of Conjugation
Definition
1) F+ - DNA crosses F pili – passes F pili gene
2) HFr – transfers piece of DNA
3) R Factor – Plasmid contains gene for f pili as well as antibiotic resistance
Term
2 main defenses
Definition
1) non specific defense
2) specific defenses
Term
non specific defense
Definition
anatomical barriers
Term
anatomical barriers
Definition
1) skin
2) mucous membranes
3)hair
4)bone
Term
skin
Definition
i. Skin – physical barrier and chemical barrier (acid pH)
1. Very few infection can penetrate intact skin
2. Exceptions:
i. Staph. auneus
ii. Dermatophyte molds – ringworm
iii. Tulanemia (rabbit fever)
Term
mocous membranes
Definition
ii. Mucous membranes – line body openings
1. Mucous flushes out organisms
a. Cilia
Term
hair
Definition
1. head
a. Infections to the head are caught by hair and never make it to the scalp/brain
2. Eyelashes, eyebrows, nasal hairs, facial hair , pubic hair etc.
Term
bone
Definition
1. Skull , ribs, pelvic bones
Term
specific defenses
Definition
1) immune system
2) reflexes and secretions
3) non-specific body chemicals
4) normal resident bacteria
5)inflammation
Term
reflexes and secretions
Definition
i. Eyes
1. Tears
a. Flush eyes and contain an antibacterial protein called lysozyme
ii. Nose
1. Mucous secretions
a. Sneeze
iii. Mouth  saliva
iv. Throat coughing
v. Stomach vomiting
vi. Intestines  diarrhea
vii. Urine flow
viii. Menstruation
Term
Non-specific body chemicals
Definition
1) lysozyme
2) betalysine
3)complement
4)interferon
5)spermine
6) leucins
7)acids
Term
lysozyme
Definition
a. Anti bacterial protein found in tears, saliva, spinal fluid, inside phagocytic cell
Term
betalysine
Definition
a. Anti bacterial protein in blood (serum
Term
complement
Definition
a. Complex serum protein consisting of at least 11 sub units
b. Helps remove bacteria with capsules and plays a number of roles in inflammation
Term
interferon
Definition
a. Anti viral protein – blocks viral take over and replication in body cells
Term
spermine
Definition
a. Anti bacterial protein found in semen
Term
leucins
Definition
a. Proteins found inside phagocytic cells
Term
acids
Definition
a. Stomach , skin, vagina
Term
normal resident bacteria
Definition
i. Found on skin, in upper respiratory tract , lower digestive tract , lower genitor-urinary tract
ii. Help keep out the pathogens. Do it in three ways
1. First they starve the pathogens
2. Produce wastes which are harmful to the pathogens
3. They cover target cells needed by the pathogens
Term
inflammation: 3 main functions
Definition
1. Localize any harmful agent
a. Stop from spreading further into the body
2. Destroy any harmful agent
3. Remove the harmful agent from the body
Inflammation involves phagocytosis and phagocytic cells
Term
2 main types of phagocytic cells
Definition
1) blood phagocytes
2) Tissue phagocyte
Term
blood phagocytes
Definition
i. White blood cells , WBCs, leukocytes
ii. Produced mostly in bone marrow but some are produced in lymph tissue. They are then released into the blood where they circulate
iii. Healthy person has between 5000-9000 WBC in every cubic mm
iv. Increase in number of WBC  leukocytosis - up to 50,000 – above 50,000 usually leukemia
v. Decrease in number of WBC  leukoctopenia – less than 1000
Term
types of WBCS
Definition
1) granulocytes
2) agranulocytes
Term
granulocytes
Definition
1)neutrophils
2)basophils
3)eosinophils
Term
neutrophils
Definition
i. Polymorphonuclear neutrophils (polymorphs, PMNs, Neutrophils)
1. Most common WBCs 60-70%
2. Very strong phagocytes
3. Very short lifespan – cannot multiple
Term
basophils
Definition
1. 1% of all WBCs
2. Very poor phagocytes
3. Short life span
4. When basophils leave the blood and enter tissue they can become another type of cells called a mast cell
Term
Eosinophils
Definition
1. 1 – 3 % of all WBCs
2. Poor phagocytes
3. Short lifespan
4. Function is to suppress inflammation
Term
Agranulocytes
Definition
1) monocytes
2) lymphocytes
Term
monocytes
Definition
i. Mononuclear phagocytes (monocytes)
1. 3-8% of all WBCs
2. Very strong phagocytes
3. Long lifespan – can multiply
Term
lyphocytes
Definition
1. 20-25 % of all WBCs
2. Strong phagocytes
3. Long life spans – can multiply
4. Main function – to regulate the body’s immune system
5. 2 main types
a. B-lymphocytes
b. T lymphocytes
Term
Tissue phagocytes
Definition
macrophages:
- wandering macrophages
- fixed macrophages
Term
wandering macrophages
Definition
 Move through tissue
 very strong phagocytes
 long life span
Term
fixed macrophages
Definition
 remain in one place
 produced and remain in lymph nodes
 part of reticuloendothelial cell of lymph nodes (RE cells)
Term
process of inflammation
Definition
- infection on or in the body in the tissue
o some cell and tissue damage (death of cells – necrosis)
 chemicals released by our own injured, damaged cells and tissue – histamine, serotonins , prostolandins
 histamine attaches to lining of blood wessel, attracts WBCs
• is the bodys primary vasodilator
• chemoattractant
Term
WBCs in inflammation
Definition
1) neutrophil
2)basophil
3) lymphocytes
4) monocytes
5) eosinophils
Term
neutrophil
Definition
1. Neutrophil – bump into bacteria and then the membrane of the white blood cell will take the bacteria into its membrane and into its cytoplasm
a. sac containing the infectious microorganism called a phagosome
b. Concentrated sac of enzymes called a lysozome in the white blood cell
c. Phagosome and lysozome will bump into each other and they become a phagolysozome
d. Lysozome breaks open and destroys the phagosome
Term
basophil
Definition
comes over next  mast cells  release more histamine
Term
lymphocytes
Definition
mediating process
Term
monocytes
Definition
active phagocytes
Term
eosinophils
Definition
suppress histamine
Term
four symptoms of inflammation
Definition
1. Heat (calor)
2. Redness (rubor)
3. Swelling (Tumor)
4. Pain (dolor)
Term
dead stuff collects
Definition
Dead stuff collects:
- Dead cell and tissue
- Dead bacteria
- Dead WBCs
- Dead RBCs
- Dead things = exudates
We can get chronic exudate - if you cant remove the puss it becomes damaging to the body
Abscess – puss collecting and we cant get rid of it
Term
Infections which resist phagocytosis and inflammation
Definition
- Pneumonia (capsule)
- Ghonnerea (pili)
- TB – lives inside phagocytes. Resists destruction by enzymes
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