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MICRO EXAM #2c
na
30
Microbiology
Undergraduate 3
06/14/2015

Additional Microbiology Flashcards

 


 

Cards

Term
What are the 3 components of nucleotides?
Definition
  1. nitrogenase base
  2. deoxyribose sugar
  3. phosphate
Term
What are the 4 nucleotides named by their bases?
Definition
  1. Adenine
  2. Thymine
  3. Cytosine
  4. Guanine
Term
What is the overall structure of DNA? How are the complementary nitrogenous bases held together?
Definition
held together by Hydrogen bonding (base pairing)
Term
What are the base-pairing rules?
Definition
  • 2 H-bonds link A-T
  • 3 H-bonds link C-G
Term
DNA chains are read ___' to ___' direction.
Definition
5' to 3'
Term
What does it mean when the DNA chains are antiparallel and complementary?
Definition

2 antiparallel (one strand 5' to 3' & one strand 3' to 3') chains are held together by complementary base pairing

Term
DNA replication process:
Definition
  1. DNA unzips
  2. Nucleotides are linked by enzymes

       -bi-directional: enzymes replicate in opp directions

        (always 5' -> 3') 

   3. Process is semi-conservative

       -each of the 2 new copies contains 1 of the original strand of DNA and 1 new strand

 

Term
What is the process of DNA replication?
Definition
  1. Helicase binds DNA at the Origin of Replication
  2. Primase lays down a short RNA primer
  3. DNA Polymerase III adds DNA nucleotides to the RNA primer
  4. Leading Strand: Continuous in the direction of the replication fork - 5' to 3'
  5. Lagging Strand: Discontinuous opposite of the replication fork 
Term
Replication only occurs in a ___' to ___' direction.
Definition
5' to 3'
Term
What is significant about the lagging strand?
Definition

-Discontinuous Synthesis: DNA polymerase cannot add nucleotides 3' to 5'

 

-DNA is synthesized in short(Okazaki) fragments

 

-RNA Primer is removed & filled in with DNA nucleotides by DNA polymerase I

 

-DNA ligase joins the fragments together

Term
What is the central dogma of molecular biology state?
Definition

Pattern of flow

 

DNA -> (transcription) -> RNA -> (translation) -> protein 

 

Term
Does one gene encode for one protein (in bacteria)?
Definition
No, 1 gene makes many proteins
Term
RNA
Definition

RNA (ribonucleic acid)

  • Sugar is ribose
  • N-Bases are A, U, G, C
  • Short Single Strands
  • Read to produce proteins according to instructions from DNA
  • 3 Types of RNA
  •   rRNA – Part of the Ribosome

         tRNA - transfers amino acids to ribosome bound to                    mRNA

         mRNA - messenger between the DNA and the                            ribosome

 
Term
DNA:
Definition

DNA (deoxyribonucleic acid) 

  • Sugar is deoxyribose
  • N-Bases are A, T, G, C
  • Long double strands linked by H-Bonds
  • Stores the genetic code in genes
  • Each human cell has 46 DNA (chromosomes)
  • Bacteria have 1 circular chromosome
 
Term
What is transcription?
Definition
transfer of genetic information from DNA to mRNA
Term
What are the steps in transcription?
Definition

1) Portion of protein unzips

2) 1 strand of DNA is used as template

3) nucleotides of mRNA are free in the cytoplasm

4) They complimentary base pair w/ DNA to form single strand of mRNA (RNA polymerase)

5) mRNA pulls away

6) DNA zips back up (3 products)

    -tRNA & mRNA

 

*ONLY LEADING STRAND (NO LAGGING)

Term
What are the 3 steps in transcription?
Definition

1) Initiation

  • RNA polymerase binds to promoter(ID gene to be transcribed)
  • sigma factor = guide to promoter

2) Elongation

  • chain of RNA nucleotides formed
  • RNA polymerase copies mRNA in 5' to 3'
  • "copy stage"

3) Termination

  • RNA synthesis ends 
  • when RNA polymerase reaches a terminator at end of gene, mRNA is released 
  • signals end of gene
Term
What is translation?
Definition
decoding mRNA to synthesize a protein
Term
What are the three components of translation?
Definition
  1. mRNA
  2. tRNA
  3. rRNA
Term
What are the 3 steps of translation?
Definition
  1. Initiation
  • Initiation complex forms
  • 30S binds to mRNA---50S joins = 70S
  • AUG signals start
  1. Elongation 
  • amino acids are joined in a long chain
  • ribosome moves from A-site to P-site (translocation of tRNA)
  • old tRNA in P-site is ejected via E-site
  • continues forming new peptide bonds
  1. Termination
  • translation stops
  • release factors free polypeptide chains
  • ribosome dissociates from mRNA & can be reused 
Term
What are codons (genetic code)?
Definition
the triplet of nucleotides in mRNA that codes for amino acid or termination
Term
What are the types of codons?
Definition
  1. Sense codon- code for amino acid
  2. Start codon- designates beginning of translation
  3. Stop codon- code for end of translation
  4. Anticodon- triplet complementery to codons and found on tRNA
Term
What are the differences between prokaryotic and eukaryotic translation/transcription?
Definition

Prokaryotic

  • simpler 
  • mRNA not modified
  • transcription/translation coupled = FAST

Eukaryotic

  • more complex
  • mRNA modified before leaving nucleus
  • transcription - nucleus
  • translation - cytoplasm
Term
What are constitutive genes?
Definition
constantly expressed- no need for control (70% of genes)
Term
What are inducible genes?
Definition
expressed when needed--controlled; genes must be activated
Term
What are repressible genes?
Definition
expressed routinely; only turned off under certain circumstances
Term
What are repressor proteins?
Definition

DNA binding proteins that bind to promoters blocking RNA polymerase

(must be turned on/off)

Term
Repressors:
Definition

-must be activated

-response to an over-abundance of end-product

-block transcription for repressed genes

Term
Inducers:
Definition

-changes shape of repressor

-deactivate repressors

-response to availability of a specific substrate

Term
What are Operons?
Definition
multiple genes that are part of a single gene expression unit (transcript)
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