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Micro Chapter 17
Identifying Pathogens
18
Microbiology
Not Applicable
10/27/2016

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Term
Methods of identifying unknown microbes fall into three categories
Definition
Phenotypic, Genotypic, Immunological
Term
Phenotypic Methods
Definition
Microscopic morphology , Macroscopic morphology, Physiological/biochemical characteristics,Chemical analysis ; observable microscopic and macroscopic characteristics ;1. Immediate direct examination ; Microscopic – differential and special stains – Gram, DFA, direct antigen testing ; 2. Cultivation of Specimen -- Colony appearance, growth requirements, appropriate media 3. Biochemical testing --Physiological reactions to nutrients as evidence of the absence or presence of enzymes
Term
Physiological/biochemical characteristics
Definition
detection of presence or absence of particular enzymes or metabolic pathways
Term
Chemical analysis
Definition
analyze specific chemical composition; cell wall peptides, cell membrane lipids
Term
Microscopic morphology
Definition
fresh or stained microorganisms from specimen; shape, size, stain reaction, cell structures
Term
Macroscopic morphology
Definition
– colony appearance; texture, size, shape, pigment, growth requirements
Term
Genotypic Methods
Definition
genetic make up ; 1. DNA analysis --Hybridization- Probes complementary to the specific sequences of a particular microbe ; 2. PCR -DNA and RNA analysis -Ribosomal RNA (Comparison of the sequence of nitrogen bases in ribosomal RNA) ; Assess genetic make-up, Culture is not necessary, Precise, automated methods, quick results
Term
Immunological Methods
Definition
Specific antibodies are used to detect antigens--Easier than testing for the microbe itself
Term
Specimen Collection
Definition
Sampling body sites or fluids for suspected infectious agent ; Results depend on specimen collection, handling, transport, and storage ; Aseptic procedures should be used
Term
Overview of Laboratory Techniques
Definition
1. Routes taken in specimen analysis ---Direct tests (microscopic, immunologic, or genetic) --- Cultivation, isolation, and identification (general and specific tests) ; 2. Two categories of results –Presumptive -Confirmatory, 4. Miscellaneous tests -Phage typing -Animal inoculation -Antimicrobial sensitivity
Term
Immunological Methods
Definition
serology; antibody-antigen reactions ------1. Serology – in vitro diagnostic testing of serum -Antibodies have extreme specificity for antigens , 2. Visible reactions include precipitates, color changes, or the release of radioactivity, 3. Tests can be used to identify and to determine the amount of antibody in serum – titer
Term
Immune Testing
Definition
1. Agglutination testing – antibody cross links whole-cell antigens, forming complexes that settle out and form visible clumps -Blood typing, some bacterial and viral diseases 2. Precipitation tests – soluble antigen is made insoluble by an antibody -VDRL - Most precipitation reactions are done in agar gels
Term
The Western Blot for Detecting Proteins
Definition
1. Electrophoretic separation of proteins, followed by an immunoassay to detect these proteins 2. Highly specific and sensitive 3. Sites of specific antibody binding will appear as a pattern of bands 4. Second test used to verify HIV status
Term
Complement Fixation
Definition
1. Lysin mediated hemolysis. , 2. Steps of test A) Test antigen reacts with test antibody, B) Contents of tube from (1.) are mixed with sheep RBCs -Complement used up in first stage, no hemolysis -Unfixed complement, hemolysis
Term
Fluorescent Antibody & Immunofluorescent Testing
Definition
1. Fluorescent antibody -Monoclonal antibody labeled by a fluorescent dye 2. FABs can be used for direct or indirect testing
Term
Immunoassays
Definition
1. Extremely sensitive to detect trace antigens and antibodies, 2. Radioimmunoassay (RIA) – antigens or antibodies labeled with radioactive isotopes 3. Enzyme-linked immunosorbent assay (ELISA) – enzyme-antibody complex produces a colored product when an enzyme-substrate reaction occurs –Indirect -Capture
Term
In vivo Testing
Definition
Antigens are introduced directly into the body to determine the presence or absence of antibodies -Tuberculin skin test, allergy testing
Term
Virus Diagnosis
Definition
1. Viruses present special difficulties because they are not cells , 2. Viruses are labor intensive to culture in the laboratory
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