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MCB 2410 Chapter 13
for exam 2
20
Biology
Undergraduate 1
03/29/2011

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Term
ribosomal RNA (rRNA)
Definition
RNA molecule that is a structural component of the ribosome
Term
messenger RNA (mRNA)
Definition
carries the coding instructions for polypeptide chains from DNA to the ribosome; after attaching to a ribosome, an mRNA molecule specifies the sequence of the amino acids in a polypeptide chain and provides a template for joining amino acids
Term
pre-messenger RNA (pre-mRNA)
Definition
larger precursor molecules which are the immediate products of transcription in eukaryotic cells; modified extensively before becoming mRNA
Term
transfer RNA (tRNA)
Definition
serves as the link between the coding sequence of nucleotides in the mRNA and the amino acid sequence of a polypeptide chain; each tRNA attaches to one particular type of amino acid and helps to incorporate that amino acid into a polypeptide chain
Term
template strand
Definition
nucleotide strand used for transcription
Term
non-template strand
Definition
nucleotide strand not transcribed
Term
transcription unit
Definition
a stretch of DNA that encodes an RNA molecule and the sequences necessary for its transcription; includes 3 critical regions: a promoter, an RNA-coding sequence and a terminator
Term
promoter (core)
Definition
a DNA sequence that transcription apparatus recognizes and binds; indicates which of the two DNA strands is to be read as the template and the direction of transcription; determines the transcription start site, the first nucleotide that will be transcribed into RNA
Term
RNA-coding region
Definition
a sequence of DNA nucleotides that is copied into an RNA molecule
Term
terminator
Definition
a sequence of nucleotides that signals where transcription is to end; usually part of the coding sequence; transcription stops only after the terminator has been copied into RNA
Term
ribonucleoside triphosphates (rNTPs)
Definition
substrate of RNA synthesis; consists of ribose, a nitrogenous base, and three phosphates linked to the 5'-carbon atom of the ribose; in transcription, two of the phosphates are cleaved, producing an RNA nucleotide
Term
RNA polymerase II
Definition
eukaryotic RNA polymerase that transcribes large ribosomal RNA molecules; transcribes pre-mRNA, some snRNAs, snoRNAs, some miRNAs
Term
consensus sequence
Definition
short stretches of common nucleotides; refers to sequences that possess considerable similarity, or consensus; its presence implies that the sequence is associated with an important function
Term
general transcription factor (TFIID)
Definition
protein that binds to eukaryotic promoters near the start site and is a part of the basal transcription apparatus that initiates transription
Term
mediator complex
Definition
Term
basal transcription apparatus
Definition
complex of transcription factors, RNA polymerase, and other proteins that assemble on the promoter and are capable of initiating minimal levels of transcription
Term
chromatin remodeling enzymes
Definition
Term
TATA box
Definition
consensus sequence (TATAAAA) commonly found in eukaryotic RNA polymerase II promoters; usually located from 25 to 30 bp upstream of the transcription start site; determines the start point for transcription
Term
TATA-binding protein (TBP)
Definition
a polypeptide; recognizes and binds to the TATA consensus sequence; binds to the minor groove and straddles the DNA as a molecular saddle, bending the DNA and partly unwinding it
Term
regulatory promoter
Definition
located immediately upstream of the core promoter; DNA sequence that affects transcription; contains consensus sequences to which transcriptional activator proteins bind
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