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Macromolecules and binding
n/a
43
Biology
Graduate
01/28/2011

Additional Biology Flashcards

 


 

Cards

Term
Monosaccharide structure
Definition
(CH2O)n
Term
Glucose structure
Definition
C6H12O6
Term
Oligosaccharide
Definition

"multiple but short"

carbohydrate made of 2-10 simple sugars

Term
Polysaccharide
Definition
Carbohydrate > 10 sugars
Term
Bonds joining carbohydrates
Definition

Glycosidic

 

Bridge one sugar to another across an atom of oxygen

 

alpha or beta

Term
Enzyme
Definition

lowers activation energy

 

is not used up in rxn

 

does not affect overall deltaG (free energy)

 

increases rxn rate, not equilibrium

 

 

Term
Alpha glycosidic bonds
Definition

Joins sugars, results in kinks

 

Found in sugar storage molecules

Glycogen or starch

Term
Beta glycosidic bonds
Definition

Straight chain of sugars

 

Found in structural carbohydrates

Cellulose

Term
Chitin
Definition

amino-sugar

 

builds hard exoskelatens of insects and crustaceans

 

beta

Term
Nucleotide structure
Definition

1. Phosphate group

 

2. Sugar group

 

3. Nitrogenous base

Term
ATP
Definition

Energy in cells

 

Adenosine tri-phosphate

 

 

Term
Catalyst
Definition

any chemical agent that accelerates a reaction without being permanently changed in the reaction

 

enzymes are biological catalysts

 

lowers activation energy

Term
Activation energy
Definition

energy required to start a reaction

 

catalyzed reactions have lower activation energies

 

 

Term
Free energy
Definition

delta G

 

same for catalyzed and uncatalyzed rxns

 

measure of potential energy

Term
negative delta G
Definition

products have less free energy than reactants

 

rxn will happen spontaneously

 

"downhill rxn"

 

favorable reaction

Term
positive delta G
Definition

products have more free energy than reactants

 

rxn will not happen spontaneously

 

"uphill rxn"

 

requires energy/enzymes to happen

(most biological rxns)

Term
Vmax
Definition

the maximum reaction rate

 

occurs as an enzyme becomes saturated with substrate

 

increase substrate, no increase rxn rate

Term
active site
Definition

place on enzyme where substrate binds

 

made of: binding site and catalytic site

Term
Lock and key model
Definition
spatial structure of an enzyme's active site is exactly complimentary to the spatial structure of the substrate
Term
Induced fit model
Definition
active site has flexibility that allows the 3D shape of the enzyme to shift in order to accomodate the incoming substrate molecule
Term
Vitamin
Definition

cofactor for enzymes

 

necessary for some enzymes to function

Term
sulfa drugs
Definition

competitive inhibition of PABA (needed to make bacterial folic acid)

 

antibiotics

 

block bacterial synthesis of folic acid, an enzyme cofactor

 

no folic acid = no nucleotides produced = no cell division

 

 

Term
Irreversible inhibitors
Definition

competitive inhibitors that chemically and covalently bind to an enzyme's active site = enzyme permanently inactive

 

increase substrate does not increase rxn rate

 

sarin

Term
sarin
Definition

nerve gas

 

irreversible inhibitor

 

binds to acetylcholinesterase (breaks down ACh)

 

muscles continually stimulated, rigid, paralysis

Term
Pseudoirreversible inhibitor
Definition

competitive inhibitor with extremely high affinities for enzyme active sites

 

hard to displace

 

methotrexate

Term
methotrexate
Definition

cancer drug

 

pseudoirreversible inhibitor

 

stops rapidly dividing cells from replicating

Term
Noncompetitive inhibitors
Definition
alter enzymes structure to decrease it's efficiency, but do not act on the active site
Term
allosteric enzymes
Definition

substrates are able to bind to sites other than the active site and increase or decrease efficiency of the enzyme

 

usually an enzyme with multiple subunits

 

hemoglobin

Term
non-glyceride lipids
Definition

steroids

sphingolipids

lipids that are not shaped like triglycerides that have a glycerol and fatty acid

Term
Monosaccharide formula
Definition
(CH2O)n
Term
Glucose
Definition

Most common monosaccharide

C6H12O6

Term
Bond joining carbohydrates together
Definition

Glycosidic

 

alpha or beta

Term
Alpha linked glycosidic bond
Definition

sugars have twisty and brancing configuration

 

found in glycogen and starch

 

sugar storage molecules

 

Term
beta linked glycosydic bonds
Definition

forms straight chains of sugars

 

found in structural carbohydrates

 

cellulose

 

builds plant cell walls

Term
oligo-
Definition

multiple but short

 

oligosaccharide = carbohydrate made of 2 - 10 simple sugars

Term
Chitin
Definition

amino-sugar

 

carbohydrate

 

builds hard exoskeleton of insects and crustaceans like lobsters

 

beta glycosydic linkages

Term
nucleotide structure
Definition

phosphate

 

sugar

 

nitrogenous base

Term
Catalyst
Definition
any chemical agent that accelerates a reaction without being permanently changed in the reaction
Term
enzyme
Definition
biological catalyst that can be used over and over
Term
Free energy
Definition

measure of potential energy of molecules in a reaction

 

unchanged by catalysts

 

molecules with high delta Gs are more likely to react b/c they want to lower their delta G values

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