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Lecture 3
Lipid - protein interactions and protein mobility
16
Biology
Graduate
07/03/2014

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Cards

Term
What is the hydrophobic mismatch?
Definition

When protein does not fit membrane well = hydrophobic mismatch. 

Term
Why could hydrophobic mismatch occur?
Definition

Such event can occur during the insertion of protein into the membrane, but hydrophobic-hydrophilic forces will try to return it to the right position.

Term
How could hydrophobic mismatch be resolved?
Definition

1) the lipid bilayer can adjust to the hydrophobic mismatch : lipid hydrocarbon chains are quite flexible, so the can be stretched, squashed, and/or tilted

2) non-bilayer lipids are often involved in this kind of adjustment : their introduction into membrane can change its thickness.

3) changes in the tilting angle of TM-helices can be employed to adjust proteins 4) because proteins often require certain lipids to function, proteins could migrate in the membrane until they find needed protein. i.e. cardiolipin needs PLP. 

Term
[image]
Definition

This graph illustrates the activity of a NADH dependence from membrane properties (artificial bilayer). Line b – aceton, line a – natural, line e – artificial, better than natural one. From line to line concentration of phospholipids increases. Why did not nature do membrane that equals e? Probably because: no evolutionary pressure, interactions with other parts of membrane.

Term
[image]
Definition

A = free, unbound protein (10 -100 nm2/c)

B  = tightly assosiated with cytosceleton

C = move along cytosceleton

D = part of big complex (micro domain), restricted in movements

E = lipid raft 

F = associated with external matrix

Term
What is lipid-rafts (lipid domains)?
Definition

Micro domains within cell membranes that are enriched in certain lipids such as cholesterol, glycolipids and sphingolipids 

Term
Outline the main features of lipid rafts
Definition

- they form domains of typical size that seem not to mix or fuse with each other

- their alleged role in cellular signaling, trafficking, and structure has yet to be determined despite many experiments

 

- their very existence is still controversial debated 

Term
What does Archea have that Eubacteria do not?
Definition

monolayer lipids based on isoprenoids 

Term
How much C atoms does usually fatty acid have?Why?
Definition

Even

 

C2 enrichment

Term
Classification of fatty acids by length
Definition

1) short (<6), 2) medium (6 – 12) for storage 3) long (14 – 20) 4) very long chain (>22)

Term
Classification of fatty acids by saturation status
Definition

Fully saturated

 

Unsaturated: poly and mono

Term
What are the main features of fully saturated fatty acids?
Definition

- no carbon-carbon double bonds

- solid at room temperature

- relative stable against rancidification (auto-oxidation)

- meat and meat products, milk and milk products, tropical oils

 

(coconut oil, palm oil) 

Term
What is the configuration of double bond in unsaturated fatty acids? Why?
Definition
Cis. It is needed for tilting of the fa. (30)
Term
Nomenclature of fatty acids
Definition

Δ - from carboxy group

ω - from methyl end

Term
Main features on mono unsaturated fatty acids
Definition

 - only one carbon double bond

 - liquid at room temperature

 - relatively stable against rancidification

- found in plant oil and animal fat

Term
Main features of poly unsaturated fatty acids
Definition

 - multiple double carbon bonds

 - liquid even below room temperature

 - unstable, prone to rancidification

 - includes many essential fatty acids

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