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Honors Biology Ch 12
Reading Guide Vocabulary and Questions
40
Biology
9th Grade
11/27/2011

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Term
What is a gene?
Definition
A distinct sequence of nucleotides forming part of a chromosome.
Term
What do most genes carry instructions for? What is the exception this rule?
Definition
Most genes contain the information needed to direct the synthesis of a single sugar.
Term
What are the proteins used for in cells?
Definition
Proteins are the "molecular workers" of the cell and form many of its cellular structures and the enzymes that catalyze its chemical reactions.
Term
Structural difference of RNA and DNA (number of strands, types of sugars, types of bases)
Definition
RNA is single stranded, DNA double

RNA has sugar ribose; DNA deoxyribose

RNA has the base uracil in place of thymine and DNA has thymine.
Term
What are the types of RNA involved in protein synthesis? Describe their functions.
Definition
Messenger RNA - carries the code for a protein-coding gene from DNA to ribosomes.

Ribosomal RNA - combines with proteins to form ribosomes, the structures that link amino acids to form a protein.

Transfer RNA - carries amino acids to the ribosomes.
Term
Transcription (location and description)
Definition
Nucleus

The synthesis of an RNA molecule from a DNA template (mRNA, tRNA, or rRNA). The enzyme/structure involved is RNA polymerase, RNA with DNA: RNA bases pair with DNA bases as an RNA molecule is synthesized.
Term
Translation (location/description)
Definition
The process whereby the sequence of bases of messenger RNA is converted into the sequence of amino acids of a protein. The ribosome and tRNA are the structures involved. mRNA with tRNA: a codon in mRNA forms base pairs with an anticodon in tRNA.
Term
What does the genetic code do?
Definition
The genetic code translates the sequence of bases in nucleic acids into the sequence of amino acids in proteins.
Term
How many bases specify an amino acid in the genetic code?
Definition
Three bases specify an amino acid in the genetic code.
Term
What is a codon?
Definition
An mRNA triplet in mRNA that codes for each amino acid. A sequence of three bases of messenger RNA that specifies a particular amino acid to be incorporated into a protein, certain codons also signal the beginning or end of protein synthesis.
Term
What is the base sequence of the codon that signifies the start protein? What amino acid does this "start" codon specify?
Definition
AUG-methionine
Term
What are the base sequences of the three codons that signify the end of a protein? What happens when the ribosome encounters these?
Definition
UAG, UAA, and UGA

The ribosome releases both the newly synthesized protein and the mRNA.
Term
How many different codons specify a single amino acid?
Definition
One codon
Term
What is the anticodon?
Definition
A sequence of three bases in transfer RNA that is complementary to the three bases of a codon in mRNA.
Term
How do the codon and the anticodon ensure proper delivery and ordering of the amino acids in the protein chain?
Definition
Codons on the mRNA are complementary to those on the anticodon on the tRNA (group of three nitrogen bases).
Term
What is RNA polymerase?
Definition
The enzyme that synthesizes RNA.
Term
Three steps of transcription with description.
Definition
Initiation - RNA polymerase binds to the promoter region of the DNA near the beginning of a gene, separating the double helix near the promoter.

Elongation - RNA polymerase travels along the DNA template strand, unwinding the RNA double helix and synthesizing RNA by catalyzing the addition of ribose nucleotides into an RNA molecule. The nucleotides in the RNA are complementary to the template strand of the DNA.

Termination - At the end of the gene, RNA polymerase encounters a DNA sequence called a termination signal. RNA polymerase detaches from the DNA and releases the RNA molecule.
Term
What is the promoter? Where is it located? What base sequence does it consist of?
Definition
The promoter is a specific sequence of DNA at the beginning of a gene, to which RNA polymerase binds and starts gene transcription.

It is located at the beginning of a gene.

It consists of two parts
1) a short sequence of bases, often TATAA that binds RNA polymerase
2) One to two other sequences called transcription factor binding sites or response elements.
**see book**
Term
How many sides of the DNA molecule serve as a template for the synthesis of RNA?
Definition
One side serves as a template for the synthesis of RNA called the template strand.
Term
What happens to DNA after transcription is complete?
Definition
Completely rewinds into a double helix.
Term
What happens to RNA after transcription is complete?
Definition
Is free to move from the nucleus to the cytoplasm for translation.
Term
What happens to RNA polymerase after transcription is complete?
Definition
May move to another gene and begin transcription once again.
Term
What are the three steps of translation? Describe them.
Definition
Initiation - When tRNA and mRNA bind to a ribosome. The preinitiation complex scans the mRNA until it fins a start codon which forms the base pairs with UAC anticodon of the methionine tRNA. A large ribosomal subunit then attaches to the small subunit, sandwiching the mRNA between the subunits and holding the methionine tRNA in its first tRNA binding site. It is now ready for translation.

Elongation - Amino Acids are added one at a time to the growing protein chain.

Termination - A stop codon signals the end of translation.
Term
What is the end product of transcription and translation?
Definition
A protein
Term
What determines the effect of deletion and insert mutations?
Definition
How many nucleotides that are removed or added determines the effect.
Term
What would be the effect of inserting three bases? What would be the effect of deleting three bases?
Definition
The effect of inserting three would add a single amino acid, and deleting three bases would delete a single amino acid.
Term
What would be the effect of inserting or deleting a number of bases that is not a multiple of three?
Definition
It could have catastrophic effects because all of the codons that follow the deletion or insertion will be altered.
Term
What is another name for inserting or deleting a number of bases that is not a multiple of three?
Definition
Frameshift mutation
Term
Describe four different outcomes of a point mutation
Definition
Silent mutation - May be unchanged because the amino acid is not changed.

Neutral Mutation - The new protein may be functionally equivalent to the original because of a similar amino acid produced.

Missence Mutation - Protein function may be changed by an altered amino acid sequence.

Nonsense Mutation - Protein function may be destroyed by a premature stop codon.
Term
Why are mutations essential to evolution?
Definition
These random changes in DNA sequence are the ultimate source of all genetic variation.
Term
What is gene expression?
Definition
The process by which information from a gene is used in the synthesis of a functional gene product
Term
What are some examples of genes that are expressed in all cells?
Definition
All cells transcribe tRNA genes, rRNA genes, and genes for ribosomal proteins because all cells need to synthesize proteins.
Term
Provide an example of a gene that is not expressed in all cells.
Definition
The gene for casein which is the major protein in milk is only expressed in mature women.
Term
List the five ways gene expression can be regulated by eukaryotes.
Definition
1) Cells can control the frequency at which an individual gene is transcribed.

2) The same gene may be used to produce different mRNAs and protein products.

3)Cells may control the stability and translation of messenger RNAs.

4) Proteins may require modification before they can carry out their functions.

5) Cells can control the rate at which proteins are degraded.
Term
Is uracil a purine or pyrimidine?
Definition
Pyrimidine
Term
What is the initiation of transcription?
Definition
TAC
Term
The TATA box is __ bases long.
Definition
30
Term
Monomer unit
Definition
Amino Acid
Term
Polymer Unit
Definition
Protein or polypeptide
Term
Peptide Bond
Definition
Covalent bond between amino acids
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