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Genetics
2nd test material genetic and DNA structure
36
Science
Undergraduate 4
06/12/2013

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Term
3 characteristics Biologist recognized genetic material must posses
Definition

1. contains complex information

2. replicate faithfully

3. must encode phenotype

Term
What componants make up a nucleotide
Definition

phosphate group

Sugar (deoxyribose, ribose)

Nutrogen containing base ( A, T, G, C, U)

Term

Primary Structure of DNA

 

Definition
string of nucleotides joined by phosphodiester linkages
Term
Purine
Definition

a bicyclic base

 

Adenine and Guanine

Term
Pyrimidine
Definition

a six member ring

 

cytosine, thymine, and Uracil

 

Term
phosphodiester linkages
Definition
bonds connect the phosphate groups and sugars together forming the backbone for DNA and RNA
Term
What does the term, antiparallel, refer to?
Definition
one starand of DNA goes from 5' to 3', while the opposite strand goes from 3' to 5'.
Term
the term complementary DNA strands refers to ...
Definition

the fact that bas pairs match up, therefore if one strand has

 

AGCCGAATT

 

the complementary strand would be

 

TCGGCTTAA

Term

toposisomerases

 

Definition

enzyme that add or remove fotations from the DNA by temporarily breaking the nucleotide strands, twisting, the re-joining the broken ends

 

has to do with supercoiling

Term
supercoiling
Definition
takes place when the DNA is subjected to strain by being overwound or underwound
Term
Euchromatin
Definition
undergoes normal the normal process of condensation and decondensation of the cell cycle
Term
heterochromatin
Definition
remains highly condensed throughout the cell cylce
Term
Nucleosome
Definition
core particle consisting of DNA wrapped about two times around an octamer of eight histone proteins ( 2x H2A, H2B, H3 and H4)
Term
chromatasome
Definition
the nucleosome + H1 protein which secures the DNA onto the Histone structure
Term
Centromeric sequences
Definition
are the binding sites for the the kinetochore, to which spindle fibers attach
Term
telomeric sequences
Definition
repeated units of a series of A or T followed by Guanine nucleotides
Term
unique sequence DNA
Definition
consists of seqences that are present only once or a rew times in genome, this can sequences that are consitute 25-50% protein encoding genes
Term

what does the term, semiconservative replication, refer to?

 

Definition
When DNA is replicated, the two new strands consist of one old strand and one new strand.
Term
What are the requirments of replication?
Definition

1. Template consisting of single-stranded DNA

2. raw materails assemnled into a new nucleotide strand

3. enzymes and other proteins that 'read' the template and assemble the substrates into a DNA molecule

Term
What side does DNA polymerase add onto?
Definition
3' end, it needs toa attach to the alcohol on the 3' carbon
Term
okazaki fragments
Definition
short lengths of DNA found on the lagging strands of DNA
Term
initiatior protein
Definition
binds to the oriC (in bateria) causes a short sections of DNA to unwind
Term
DNA Helicase
Definition
breaks the hydrogen bonds between basses, 'unzipping' the DNA for replication
Term
single-strand binding proteins
Definition
these proteins bind to the DNA after Helicase unzips, and prevent the DNA from interacting with itself
Term
DNA gyrase
Definition
a type of topoisomerase, reduces the strain caused by helicase when it unzips DNA
Term
Primase
Definition
starts replication by providing a 3'-OH group
Term
DNA polymerase III
Definition
elongates the polynucleotide strand, does most of the replication
Term
DNA polymerase I
Definition
removes primers and places the correct sequence as well as proofreads
Term
DNA ligase
Definition
seals 'knicks' the in the newly synthesized strand that are cause by the primers being removed and DNA polymerase I replacing the strand
Term
mismatch repair
Definition
mismatched bases are recognized by proetins and are replaced by the correct base by using the opposite strand as a template
Term
Replication Licensing Factor
Definition

replication of orgins are 'licensed' or approved for replication

 

only in euchariotic cells as they have multiple O.R.

Term
end-replication problem
Definition

when the primer at the end of the chromosome has been removed it can't be replaced by DNA nucleotides, producing a gap at the end of the chromosome. suggesting that the chromosome should beome progressively sotere with each round of replicaiton. thsi would then be passed on through the generation of cells and evetually destablize.

 

the inablility to replicate the end of eukaryote chromosomes

 

 

Term
telomeres
Definition
are located on the end of a chromosome, contain copies of short repeated seuence
Term
telomerase
Definition
adds on nucleotides to the telomere sequence
Term
Transcription requires...
Definition

1. DNA template

2. raw materials (ribonucleotide triphosphates)

3. transcription apparatus consisting of hte proteins necessary for caralyzing the synthesis of RNA

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