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Genetics
Genetics from UNC Reproductive Medicine course
168
Science
Graduate
04/09/2013

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Term
Test for Turner syndrome
Definition
Karyotype
or FISH to r/o mosaicism
Term
Test for NF1
Definition
Clinical diagnosis
Term
Test for Marfan
Definition
DNA sequencing (93% accurate) in the context of clinical suspicion
Term
Test for MCAD
Definition
Newborn screen using tandem MS for acylcarnitine
Term
Leigh syndrome test
Definition
clinical diagnosis
Term
NARP test
Definition
lactate levels, look at mitochondrial DNA
Term
NARP mutation
Definition
think heteroplasmy
Term
MCAD mutation
Definition
K304E most common
Term
Leigh syndrome mutation
Definition
MT-ATP6 mutation
Term
Marfan mutation
Definition
FBN1 gene has mutant fibrillin on xsome 15q21
Term
NF1 mutation
Definition
NF1gene has mutant neurofibromin on xsome 17q
Term
Test for Huntington disease
Definition
PCR to detect CAG expansion (<26 is normal)
Term
Test for Down syndrome
Definition
Karyotyping
Term
Test for congenital deafness
Definition
newborn screen audiometry/ABR; sequence GJB2
Term
which disease uses southern blot to determine methylation status?
Definition
Myotonic Dystrophy
Term
Which diseases display anticipation?
Definition
Fragile X (CGG), Huntington(CAG), Myotonic Dystrophy (CTG)
Term
22q11.2 is characterized by what clinical symptoms?
Definition
Big nose, small eyes, cleft palate, hypocalcemia, impaired T cells
Term
What is the test for 22q11.2 (DiGeorge)
Definition
FISH or microarray
Term
How do you estimate the date of delivery?
Definition
40 weeks from 1st day of last menstrual period or add 7 days to the 1st day of the last menstrual period then subtract 3 months
Term
What are the weeks of each trimester?
Definition
1st – 1st 12 to 14 weeks
2nd – 12-24 to 28 weeks
3rd – 24 weeks +
Term
What are the G’s and P’s of obstetrics?
Definition
Gravida: number of pregnancies total
Para: a – Number of full term deliveries (>37 weeks)
b – Number of preterm deliveries (20-37 weeks)
c – Number of miscarriages/abortions (<20 weeks)
d – Number of living children
Term
On what day do you have implantation of the blastocyst?
Definition
Day 8-9
Term
What embryological layer turns into the outer layer of placenta?
Definition
Trophoblast
Term
What are the two layers of the outer placenta?
Definition
Outer synctiotrophoblast and inner cytotrophoblast
Term
In a normal pregnancy, what hormone is first detectable 6-12 days after ovulation?
Definition
Beta-HCG
Term
When do Beta-HCG levels peak during a normal pregnancy?
Definition
10 weeks (at ~100,000 mIU/mL)
Term
A progesterone level below what number indicates an abnormal pregnancy?
Definition
5
Term
On ultrasound, what is the first visible indication of a sure Intrauterine pregnancy?
Definition
Yolk sac
Term
At what gestational age would you expect to see cardiac motion?
Definition
7 weeks
Term
What are risk factors for spontaneous abortion?
Definition
Maternal age, prior miscarriage, smoking, and alcohol/cocaine
Term
What is the most common reason for spontaneous abortion?
Definition
Genetic (errors in gametogenesis)
Term
What are maternal infections that cause spontaneous abortions?
Definition
Listeria monocytogenes, Toxoplasma gondii, parvovirus B19, rubella, and cytomegalovirus
Term
What would you use to medically manage a spontaneous abortion?
Definition
Misoprostol, mifepristone
Term
What is the most common cause of maternal mortality in the first trimester of pregnancy?
Definition
Ectopic pregnancy
Term
Where are most ectopic pregnancies located?
Definition
Ampulla
Term
What are the risk factors for ectopic pregnancies?
Definition
Previous ectopic pregnancy, prior tubal surgery or sterilization, pelvic inflammatory disease (PID), IUD in place, in utero DES exposure, assisted reproductive technologies
Term
What is the medical management of an ectopic pregnancy?
Definition
Methotrexate
Term
What are the risk factors for a molar pregnancy?
Definition
Age > 35, age <20, southeast Asian, history of prior molar pregnancy
Term
What is seen on ultrasound for a complete mole?
Definition
“Snowstorm” pattern
Term
What is the chromosomal pattern for a complete mole?
Definition
46XX
Term
What is the chromosomal pattern for an incomplete mole?
Definition
69XXY, 69XXX
Term
If you suspect malignancy from the gestational trophoblastic disease, what patterns should you see for the Beta HCG?
Definition
Plateau of HCG, rising HCG, and persistent HCG 6 months after evacuation or delivery
Term
What age group is an elective abortion most common?
Definition
20-24
Term
What is used for a medication-induced abortion?
Definition
Mifepristone and misoprostol
Term
What is the mechanism of action of mifepristone?
Definition
Blocks the receptors for progesterone and glucocorticosteroids -> results in uterine contractions, pregnancy disruption, and dilation and softening of the cervix
Term
When is it possible to use medication to terminate?
Definition
Less than 9 weeks
Term
What hormone is stimulated by progesterone to increase body water?
Definition
Renin
Term
What hematologic changes occur during pregnancy?
Definition
RBC volume increase (but physiologic anemia starting at 30-34 weeks EGA), increase in leukocytes, decline in platelets
Term
What cardiac abnormalities arise during a normal pregnancy?
Definition
Peripheral edema, JVD, dyspnea, change in heart position and size (physiologic hypertrophy), S3 gallop, systolic ejection murmur (Others – increase in cardiac output, MAP, and HR, decrease in pulmonary vascular resistance, colloid oncotic pressure, and CVP)
Term
What decreases systemic vascular resistance in pregnancy?
Definition
Progesterone mediated vasodilation, low pressure “sink” of uterine, placental circulation
Term
Where is the top of the mother’s uterus at week 24?
Definition
Top of belly button (umbilicus)
Term
What is the major cause of venous thromboembolism in pregnancy?
Definition
Venous stasis, vessel wall injury, and hypercoagulability (decrease in fibrinolytic system and increase in procoagulant factors)
Term
In pregnancy, the increase of this hormone causes a 2-3 times increase in thyroid binding globulin?
Definition
Estrogen
Term
What are the weight gain goals for a patient with a BMI of greater than 30?
Definition
11-20 lbs
Term
What factors affect maternal blood flow and exchange across the syncytiotrophoblast?
Definition
Maternal blood pressure, maternal vasospasm, size of the placental bed, and thickness of the barrier between fetal/maternal circulation
Term
What is the time frame for the development of gestational hypertension?
Definition
HTN develops after 20 weeks gestation in the absence of proteinuria
Term
What are mothers with severe gestational HTN at risk for?
Definition
Placental abruption, preterm delivery, small for gestational age infant, induction of labor, cesarean section, and development of preeclampsia
Term
To diagnose pre-eclampsia, what vital signs and lab values must a mother have?
Definition
HTN (BP > 140/90), proteinuria (> 0.3 g in 24 hours), and edema that develops after 20 weeks gestation
Term
To diagnose severe pre-eclampsia, what must a mother present with?
Definition
Preeclampsia and the presence of one of the following signs or symptoms:
BP > 160/110, proteinuria > 5 g in 24 hour collection or > 3+ urine dipstick, pulmonary edema or cyanosis, oliguria, cerebral or visual disturbances (headaches or scotoma), epigastric or RUQ pain, impaired liver function, thrombocytopenia, or IUGR
Term
What are the neonatal/fetal risks for preeclampsia?
Definition
Fetal demise (chronic hypoxia, acute hypoxia, acidosis) or neonatal demise (asphyxia or prematurity)
Term
How would you manage a patient with severe preeclampsia?
Definition
Onset after 34 weeks – delivery
Onset <34 weeks – if stables, then give corticosteroids to accelerate lung maturity and hospitalization with daily fetal assessment
Term
What can be used for seizure prophylaxis in preeclampsia?
Definition
Magnesium sulfate
Term
If a patient has HELLP syndrome (hemolysis, elevated liver enzymes, and low platelets), what should you do?
Definition
Deliver
Term
When can eclampsia occur?
Definition
Antepartum, intrapartum, or post-partum
Term
What are risk factors for gestastional diabetes?
Definition
Obesity, ethnicity, multifetal gestation, maternal age > 35, prior affected gestation, first degree relative with diabetes, and hypertensive disorders
Term
What are fetal risks for gestational diabetes?
Definition
Macrosomia, stillbirth, delayed respiratory maturity, neonatal (polycythemia, hypoglycemia, jaundice, acidosis, hypocalcemia), and lifetime risk of obesity, diabetes, and HTN
Term
When should you screen for gestational diabetes?
Definition
26-28 weeks with 50 gram glucose challenge. However screen earlier if obese, prior history
Term
Post-partum, what are mothers with gestational diabetes at risk for?
Definition
Developing frank diabetes
Term
For a monochorionic/monoamniotic monozygotic twins to form, what days could you have splitting of the egg?
Definition
Days 8-13
Term
In a complete placenta previa, where is the placenta located?
Definition
Overlying the internal os of the cervix
Term
What are risk factors for placenta previa?
Definition
Multiparity, advanced maternal age, multiple gestation, prior uterine surgery, uterine abnormality, smoking, and cocaine use
Term
What is the classic presentation of a patient with placenta previa?
Definition
Asymptomatic bleeding, sudden onset, “sentinel bleed”
Term
What are fetal risks of placental abruption?
Definition
Intraventricular hemorrhage, leukomalacia, and hypoxic brain injury
Term
What is the classic presentation of a patient with placental abruption?
Definition
Painful, non-clotting blood, fetal compromise, DIC
Term
For a patient with possible placental abruption, what would you be looking for on history?
Definition
Cocaine use, abdominal trauma, maternal HTN, multiple gestation, and polyhydramnios
Term
What is typically performed to treat a placenta accreta?
Definition
Cesarean hysterectomy
Term
What is the action of oxytocin on the initiation of labor?
Definition
Stimulates uterine contractions and stimulates PG production from amnion/decidua
Term
What are inhibitors of uterine activity during pregnancy?
Definition
Progesterone, prostacycline, relaxin, nitric oxide, and PTH-rp
Term
What are the cardinal movements of labor?
Definition
Descent, flexion, internal rotation, extension, external rotation, and expulsion
Term
How is labor diagnosed?
Definition
Clinically by regular uterine contractions (duration 30-60 seconds, every 5 minutes) and progressive cervical change (effacement and dilation)
Term
Early decelerations in fetal heart rate monitoring can be caused by what?
Definition
Vagal reflex (cervical compression on fetal head)
Term
Late decelerations in fetal heart rate monitoring can be caused by what?
Definition
Uteroplacental insufficiency, low O2 in CNS, increased sympathetic tone, increased BP, bradycardia, and myocardial depression
Term
What agents can be used to inhibit uterine contractions?
Definition
Magnesium sulfate, terbutaline, nifedipine, indomethacin, and oxytocin receptor antagonists
Term
How would you diagnose premature rupture of membranes?
Definition
Vaginal pooling, “Nitrazine” positive, “Ferning”, Indigo carmine amnioinfusion (gold standard)
Term
Fetuses with accessory lobes in their placenta are at risk for what?
Definition
Fetal bleeding at the time of the membrane rupture
Term
A green color of placental membranes indicates what?
Definition
Meconium
Term
What does meconium discharge indicate?
Definition
Fetal distress or fetal maturity
Term
For acute chorioamnionitis, what is often the appearance of the membranes?
Definition
Cloudy, opaque and often yellow
Term
What organisms cause acute chorioamnionitis?
Definition
Group B strep, gram negative enteric organisms, anaerobes
Term
In the amnion and chorion of a patient with acute chorioamnionitis, what would you see on histology?
Definition
Numerous neutrophils
Term
What are the fetal complications of chronic villitis?
Definition
Infection, IUGR, fetal distress or demise
Term
When would you see hemosiderin-laden macrophages in the placental tissues of a mother with a retroplacental hematoma?
Definition
4 to 5 days
Term
In placenta increta, what does the placenta invade?
Definition
Myometrial wall
Term
What are the American Academy of Pediatrics recommendations for breastfeeding?
Definition
Exclusive breastfeeding for about 6 months, with continuation of breastfeeding for 1 year or longer
Term
What hormone induces milk synthesis?
Definition
Prolactin
Term
What is the colostrum very high in?
Definition
Protein/antibodies and vitamins
Term
What type of formula is less likely to cause allergic reactions?
Definition
Protein hydrolysate formulas
Term
What is the definition for infertility?
Definition
>1 year of unprotected intercourse without conception
Term
What approaches can be used to monitor ovulation?
Definition
Urinary LH, basal body temperature, cervical mucus monitoring, menstrual cycle diary
Term
What are the most common etiologies for infertility?
Definition
Male and tubal/peritoneal factors
Term
What are genetic factors that cause abnormal sperm production?
Definition
Klinefelters, CFTR mutation, and microdeletion of the Y chromosome
Term
What are hypothalamic causes for ovarian dysfunction?
Definition
Kallman’s syndrome, anorexia, athletics
Term
What would you evaluate when considering the ovarian factor causing infertility?
Definition
HPO axis, thyroid, hyperprolictinemia, and genetic
Term
What is required for the use of clomiphene and the aromatase inhibitors for ovulation induction?
Definition
Functional HPO axis
Term
. How would you diagnose the tubal factor as being the etiology of infertility?
Definition
Hysterosalpingogram and chomopertubation during laparoscopy
Term
What are acquired abnormalities of the uterus that cause infertility?
Definition
Submucosal leiomyoma, endometrial polyp, and intrauterine adhesions (Asherman’s)
Term
The incidence of chromosome abnormalities is highest in spontaneously aborted pregnancies in what trimester of pregnancy?
Definition
First trimester
Term
In pregnant individuals, who would you offer a karyotype to?
Definition
Individuals and pregnancies that are clinically abnormal, individuals with a personal history or a family history of miscarriages, clinically abnormal offspring, and/or infertility, and patients with a positive first or second trimester serum marker screen
Term
What testing procedure has the highest risk of procedure-induced pregnancy loss?
Definition
Chorionic villus sampling (10-12 weeks)
Term
What is the most common prenatal sample type for cytogenetic testing?
Definition
Amniocentesis
Term
What increases the recurrence risk of a woman with a previous child with trisomy 21?
Definition
Gonadal mosaicism and increased predisposition to meiotic error
Term
What is the theoretical recurrence risk for having a live born Down syndrome child due to parent’s Robertsonian translocation?
Definition
33% (Empiric recurrence risk is 3-5% and 10-15% for male and female carriers respectively)
Term
What is the most common form of Down syndrome?
Definition
Nondisjunction (47, XY, +21)
Term
From what parent is the sex chromosome preferentially lost in Turner syndrome?
Definition
Paternal (75-80%)
Term
There is the risk of what occurring if Y bearing cell line present in a Turner syndrome patient?
Definition
Formation of Gonadoblastoma
Term
What is the prophylactic treatment of gonadoblastoma?
Definition
Gonad removal
Term
Large distal exchanged segments in translocations can increase the risk of what?
Definition
Miscarriages and/or periods of infertility
Term
Trisomies and monosomies of what chromosomes are likely to result in miscarriages and infertility?
Definition
14, 17, and 19
Term
What can prenatal interphase FISH assays detect?
Definition
Common aneuploidies (X, Y, 13, 18 and 21)
Term
When can a FISH assay not be able to confirm the diagnosis of DiGeorge syndrome?
Definition
When microdeletions are positioned outside of the critical region that is targeted by FISH
Term
What is the low limit of resolution for G-banding(Karyotyping)?
Definition
3-5 Mb
Term
What cytogenetic technique can identify a translocation that is balanced?
Definition
Metaphase FISH and karyotyping
Term
What can SNP data identify?
Definition
Long stretches of homozygosity associated with uniparental disomy and consanguinity
Term
What can chromosome microarrays not detect?
Definition
Balanced rearrangements and low level mosaicism
Term
What are limitations of PCR based mutation detection assays?
Definition
Large gains and losses will not generally be detected and sequence variants within the primer/probe regions can interfere with primer annealing
Term
What is the inheritance pattern for myotonic dystrophy and what is the mutation?
Definition
Autosomal dominant, trinucleotide repeat expansion (CTG)n
Term
What can be used to identify the trinucleotide repeat expansion of myotonic dystrophy?
Definition
Southern blot
Term
What are the symptoms of congenital myotonic dystrophy?
Definition
Hypotonia, intellectual disability, poor feeding, respiratory distress, bilateral facial weakness (“tented” mouth), myotonia develops after 5-10 years, and nearly always inherited from affected mothers
Term
What is the most common form of intellectual disability?
Definition
Fragile X syndrome
Term
What is the trinucleotide repeat in Fragile X syndrome and what the trinucleotide repeat mean on a chromosomal level?
Definition
CGG causing a higher degree of methylation on FMR1 allele
Term
How many repeats are necessary to cause loss of expression of the FMR1 gene?
Definition
>200
Term
What is the trinucleotide repeat in Hungtinton disease?
Definition
CAG
Term
What is the term used to describe the progressively earlier onset and increased severity of certain diseases in successive generations of a family?
Definition
Genetic anticipation
Term
What cytochrome p450 metabolizes warfarin?
Definition
CYP2C9
Term
What genetic variants of CYP2C9 result in reduced activity?
Definition
CYP2C9*2, CYP2C9*3
Term
What are the criteria for including a disorder in the newborn screen?
Definition
1) the natural history of the disorder is understood, 2) relatively high incidence, 3) effective medical treatment, 4) inexpensive screening test, 5) screening test has a very high sensitivity and specificity
Term
What are the two major causes of PKU?
Definition
Deficiency of phenylalanine hydroxylase and deficiency of the cofactor, tetrahydrobiopterin
Term
What are the disorders detected by MS/MS?
Definition
Amino acidopathies (PKU, maple syrup urine disease, homocystinuria, etc), organic acidemias (propionic academia, methylmalonic academia, isovaleric academia, etc), fatty acid oxidation disorders (SCAD deficiency, MCAD deficiency, etc)
Term
What causes classical galactosemia?
Definition
Deficiency of the enzyme galactose-1-phosphate uridyltransferase
Term
For patients with urea cycle disoders, what should you limit in their diet?
Definition
Protein
Term
What can be used to treat patients with urea cycle disoders?
Definition
Arginine or citrulline, sodium benzoate, and sodium phenylacetate/phenylbutyrate
Term
What can be used to treat patients with glycogen storage disorder type 1?
Definition
Frequent feedings with glucose or glucose polymers
Term
What are the clinical features of biotinidase deficiency?
Definition
Seizures, ataxia, hypotonia, developmental delay, skin rash, and alopecia
Term
angiomyolipoma, seizures, six hypopigmented patches and subependymal nodules
Definition
tuberous sclerosis, tumor suppressor mutation
Term
how is tuberous sclerosis diagnosis confirmed?
Definition
DNA sequencing
Term
the mechanism of getting Prader Willi syndrome that prevents methylation testing is due to
Definition
uniparental disomy
Term
large ears, h/o intellectual diability in a developmentally delayed child is likely what disease
Definition
Fragile X syndrome
Term
a child presents with bilateral SNHL, confirmed by ABR, has white tuft of hair in anterior hairline, hypopigmented patches on skin is likely what disease
Definition
Waardenburg syndrome, diagnosed with MLPA to identify partial gene deletions
Term
•A single disorder, trait, or pattern of traits caused by mutations in genes at different chromosomal loci
Definition
locus heterogeneity
Term
q^2 is the affected population
p^2 is the unaffected population and
2pq is what population
Definition
carrier population, heterozygotes
Term
What is Citrullinemia?
Definition
Mutations in the ASS1 gene cause type I citrullinemia. This gene provides instructions for making an enzyme, argininosuccinate synthase 1, that is responsible for one step of the urea cycle. Mutations in the ASS1 gene reduce the activity of the enzyme, which disrupts the urea cycle and prevents the body from processing nitrogen effectively
Term
what enzyme is missing in galactosemia?
Definition
galactose-1-phosphate uridyltransferase
Term
long term consequences of galactosemia even with compliance in treatment?
Definition
short stature, ovarian failure, learning disabilities, shyness, difficulty in social interactions
Term
in a child with MCADD should you test siblings
Definition
yes, look for acylcarnitine
Term
why does hypoketonuria occur in MCAD def patients who are fasting?
Definition
they have a defect in metabolizing long chain sat fats including ketone bodies
Term
what test is appropriate for: a couple that has had 3 first trimester SAB unexplained by gynecologic exam?
Definition
routine chromosome analysis
Term
what test is appropriate for: a kid with achondroplasia. You know that 8% of individuals with it have G1138A substitution in FGFR3 gene?
Definition
PCR based DNA test
Term
what test is appropriate for: a kid with multiple café au lait spots and bilateral optic gliomas?
Definition
no test! future gene sequencing for planning future pregers!
Term
what test is appropriate for: a kid with Smith-Magenis syndrome, you know that 70% of individuals with this have 3.5Mb microdeletion
Definition
FISH and MLPA
Term
what test is appropriate for: a kid with microcephaly and developmental delay as a result of maternal PKU?
Definition
no test!
Term
what test is appropriate for: a lady with scoliosis and h/o lens discoloration, currently pregers and wants to test her fetus?
Definition
Sequencing
Term
what test is appropriate for: a boy with regression, infections, loss of growth?
Definition
metabolic studies
Term
what test is appropriate for: a neonate with multiple congenital anomalies, mother had amniocentesis with normal prenatal karyotype?
Definition
microarray study
Term
what is the most likely embryologic derivative to a kid who presents with sparse hair, decreased sweating, and abnormal teeth. He currently has 8 teeth that are small and pointy?
Definition
ectoderm
Term
what developmental abnormality is at play in a kid who presents with sparse hair, decreased sweating, and abnormal teeth. He currently has 8 teeth that are small and pointy?
Definition
malformation
Term
bluish pale skin, S2 heart sound, EKG shows RVH. what genetic condition is most likely present?
Definition
22q11.2 deletion syndrome - this kid has tetralogy of Fallot.
Term
Aortic root dilatation/dissection is seen in which genetic condition?
Definition
Duchenne muscular dystrophy
Term
Coarctation of the aorta is seen in which genetic condition
Definition
Turner syndrome
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