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Genetic Final
N/A
220
Biology
Undergraduate 4
12/04/2011

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Term
Spontaneous mutation
Definition
changes in nucleotide sequence, no known cause and occur during replication
Term
Germ cell mutations
Definition
the sex cells are mutated and is heritable to next generation
Term
Somatic cell mutations
Definition
all other cells except sex cells ar emutated, mostly spontaneous but is generaly not transitted to next generation
Term
Induced mutations
Definition
the result of external factors
Term
Adaptive mutations
Definition
organisms can turn on or turn off mutations dependon on environmental factors
Term
Hypermutable states
Definition
organisms in situations that need mutations to enhance their chance for survival
Term
x-linked mutations
Definition
mutations that happen on the x chromosome
Term
autosomal mutations
Definition
mutations that happen on the remaining 22 chromosomes
Term
Point mutations
Definition
Change in one base that will rresult in the change of the heterocyclic base pair
Term
Missense mutation
Definition
when a change in one nucleotide results in the change in codon which codes for a different amino acid
Term
Nonsense mutation
Definition
when one nucleotide is change d and accidently codes for a stop codon which does not allow for the protein to be finished, so it will not be active
Term
Silent mutation
Definition
changes one base, but still codes for the same amino acid, no problems
Term
Transition
Definition
one pyrimidine replaces a pyrimidine or one purine replaces a purine
Term
Transversion
Definition
a pyrimidine replaces a purine
Term
Frameshift mutation
Definition
one or more bases are inserted or deleted from teh DNA code (usually in factors of threes, bc that would be eidited out)
Term
Loss of function
Definition
the result of point muations and framshift mutations
Term
Null mutation
Definition
when an entire protein doesn't work
Term
Competitive inhibition
Definition
doesnt work correctly because doesnt form correct shape but can still fit in active site so it inhibits work
Term
Non competitive inhibition
Definition
misshapen protein doesnt bind to active site but to another enazyme causing achange in shape and function
Term
Gain of function mutations
Definition
if mutation make enzyme work more efficient
Term
Neutral mutation
Definition
mutation does not change the phenotype or affects any product that is produced
Term
Nutritional Mutation
Definition
loses ability to synthesize amino acids or vitamins
Term
Phenylalanine hydroxylase (PAH)
Definition
this loses the ability to break down phenylalanine to tyrosine is defective in PKU
Term
Biochemical mutation
Definition
a structural deformity causing you to lose function in your body
Term
Behavioral mutation
Definition
causes a change in mating behavior in animals
Term
Regulatory mutation
Definition
occurs in regulatory gene
Term
Lethal mutation
Definition
the outcome is deadly
Term
HEXA gene
Definition
In Tay-Sachs, this gene located on chromosome 15 incorrectly codes for alpha-Nacetyle-hexa aminidase
Term
alpha-N-acetyl-hexosaminidase A
Definition
enzyme coded on chromosome 15 and found in GM2 to GM3
Term
Ganglioside (GM2)
Definition
Broken down by alpha-N-acetyl-hexosaminidase A to GM3
Term
GM3
Definition
the result of GM2's hydrolysis via alpha-N-acetyle-hexosaminidase A
Term
Conditional mutation
Definition
only happens in a particular situtation or environment
Term
Temperature sensitive mutation
Definition
shows up in Siamese cats and is a subgroup of conditional mutation
Term
DNA replication errors
Definition
base modificaitons that can cause spontaneous mutations
Term
DNA polymerase alpha
Definition
put the wrong nucelotide during replication therefore causing a mutation
Term
Exonuclease
Definition
when when the dna polymerase replicates in the 3'-->5' (opposite)
Term
Tautomers
Definition
isoforms of the heterocyclic bases
Term
Tautomeric shifts
Definition
the cause of different functional groups attaching to the base
Term
Keto form
Definition
the base is a correct pyrimidine
Term
Enol form
Definition
if the base is an isoform pyrimidine
Term
Amino form
Definition
if the base is a correct purine
Term
Imino form
Definition
if the base is an isoform purine
Term
Replication slippage
Definition
dna replication leads to the introduction of small insertions or deletions
Term
Depurination
Definition
the bond in deoxyribose and purine is broken it causes the loss of the heterocyclic base G or A in an intact DNA molecule
Term
Apurinic site
Definition
The area where purine is not there
Term
Deamination
Definition
heterocyclic bases are damaged by the amino group and the cytosine or adenine is taken off
Term
Hypoxanthine
Definition
What uracil and adenine is changed to as a result of deamination's conversion
Term
Superoxides (O2-)
Definition
Free radical that can be generated from radiation and are highly reactive with proteins
Term
Hydroxyl radicals (OH-)
Definition
free radical that can be generated from radiation and are highly reactive with proteins
Term
Hydrogen peroxides (H2O2)
Definition
free radical that can be generated from readiation and are highly reactive with proteins
Term
Oxidative damage
Definition
resulting in free radicals that can be generated from radiation and are highly reactive with proteins
Term
Transposons
Definition
Free radicals that can move between genomes and insert their genes
Term
Transposable genetic elements (jumping genes)
Definition
like transposons, free radicals that can move between genomes and insert their genes
Term
Mutagens
Definition
agents that can cause mutation
Term
Base analogues
Definition
a category of mutagenic chemicals that can substitute for a purine or pyrimidine, a nucleic acid-like compound
Term
5-bromouracil (5-BU)
Definition
an example of base analogues where methyl group is substituted by Br
Term
Bromide (Br)
Definition
the element that replaces methyl group as a reult of 5-bromouracil (5-BU)
Term
Bromodeoxyuridine (BrdU)
Definition
when heterocylic bases are damaged by the amino group in the C or A is taken off
Term
2-amino purine (2AP)
Definition
base analogue that substituted for adenine and can form hydrogen bonds with either T or C
Term
Alkylating agents
Definition
chemical mutagens that donate alkyl groups such as CH3CH2, methyl, keto, or amino groups
Term
Mustard gas
(1,5-dichloro-3-thiapentane)
Definition
an example of a chemical mutagen that smells like mustard and promotes blisters
Term
Acridine dyes
Definition
causes frame shif tmutations because they are the same shape, size and strucutres of heterocylcic bases, replacesing them and wedging themselves in DNA
Term
Intercalate
Definition
wedging
Term
Proflavin
Definition
Acridine dye, anti-bacterial agent used in WWI/II to disinfect wounds
Term
Acridine orange
Definition
nucleic acid dye that fluorites green when it binds with DNA
Term
Electromagnetic spectrum
Definition
long wavelength=weak energy
short wavelength=strong energy=more mutation causing
Term
Ultraviolet radiation
Definition
approximately 260nm and absorbed by purines and pyrimidines
Term
Pyrimidine dimers
Definition
when two thymines from crosslink with each other
Term
Ionizing radiation
Definition
the mutagen rays that excite electrons from different molecules and causes them to escape and forms free radicals
Term
free radicals
Definition
highly reactive and alters purines or pyrimidines
Term
X-rays
Definition
ionizing radiation
.01-10nm
Term
Gamma rays
Definition
ionizing radiation
10^-3nm
Term
Cosmic rays
Definition
ionizing radiation
10^-5nm
Term
8-hydroxyguanine
Definition
a free radical formed by x-rays and a mutation of guanine that forms bonds with A instead of C
Term
phosphodiester bonds
Definition
bonds between phosphate group and sugar
Term
H-substance
Definition
are on the membrane surface of erythrocytes and are limited by sugards added to terminal end
Term
I gene
Definition
three alleles that encodes for glycosyltransferase
Term
Glycosyltransferase
Definition
I gene encodes
incorporates sugars on the terminal end of the H-substance
Term
I^A allele
Definition
encodes for I^A glycosyltransferase
Term
I^A glycosyltransferase
Definition
encoded by I^A and attaches N-acetylgalactosamine to terminal end of H-substance in type A
Term
N-acetylgalactosamine
Definition
is attached to the terminal end of H-substance of type A
Term
I^B allele
Definition
encodes for I^B glycosyltransferase
Term
I^B glycosyltransferase
Definition
encoded by I^B and attaches galactose to terminal end of H-substance in type B
Term
Galactose
Definition
is attached to the terminal end of H-substance of type B
Term
I^O allele
Definition
Null allele and does not code for anything
has deletion of 231 bases into the exon that codes for enzyme
one nucleotide dif from I^A
Term
Duchenne Muscular Dystrophy (DMD)
Definition
childhood form, caused by missing genes for dystrophin
Term
Dystrophin
Definition
DMD; which is a cytoplasmic protein responsible for connecting cytoskeleton structure in the muscle cells
Term
Dystrophin gene
Definition
The gene that codes for dystrophin
Term
Becker Muscular Dystrophy (BMD)
Definition
a mild form of MD, the dystrophin protein is partially working
Term
Tri-nucleotide repeats
Definition
a mutation that occurred during the replication or repairs of DNA, everyone has this
Term
Fragile X syndrome
Definition
case of repeats, oer 231 repeats in the FMR-1 gene and consists of CGG trinucleotide repeats
Term
FMR-1 gene
Definition
the location of repeats in the Fragile X Syndrome
Term
Myotonic dystrophy (MD)
Definition
causes atrophy in the face, arms, and legs, cataracts, caused by MDPK gene
Term
Myotonic dystrophy protein kinase (MDPK)gene
Definition
causes Myotonic Dystrophy or the MDPK
Term
Myotonic dystrophy protein kinase
Definition
large enzyme coded by MDPK that causes Myotonic dystrophy
Term
Allele H
Definition
Causes lethal mutation on chromosome 4 and codes for Huntingtin protein
Term
Huntingtin
Definition
a protein that results in Huntingtin's disease
Term
Huntington Disease (HD)
Definition
Autosomal Dominant disease where there is a degenerative neurological function
lack of coordination, jerking dementia and eventually death
Term
Dominant Autosomal
Definition
Huntingtin's disease
Term
Polyglutamine tract (Poly Q tract)
Definition
known as CAG because it codes for glutamine-glutamine-glutamine, and have 35 or more repeats of this
Term
Juvenile Huntingtin disease
Definition
has close to 120 glutamine-glutamine-glutamine repeats, subgroup of huntingtins
Term
Akinetic-rifid Huntingtin Disease
Definition
has close to 120 glutamine-glutamine-glutamine repeats, subgroup of huntingtins
Term
Westphal Huntingtin disease
Definition
has close to 120 glutamine-glutamine-glutamine repeats, subgroup of huntingtins
Term
Proof reading-replication repair
Definition
Monitering of DNA by checking backwards along the base pairs
Term
Exonuclease
Definition
it monitors the mistakes along the dna strand
Term
Mismatch repair system
Definition
an exonuclease will make a cut around a region that doesn't match, unwound, removed, and degraded
Term
Adenine methylase
Definition
enzyme involved in mismatch repair that adds a methyl group to every adenine on the template and tells exonuclease this part is correct
Term
Post replication repair
Definition
if mistakes remain and deals with pyrimidine dimmers
Term
Recombinational exchange
Definition
process where gap is repaired by the Rec A protein
transfer from other parent strand and gap is filled by DNA ligase
Term
SOS Repair System
Definition
last resort for error correction and DNA polymerase III begins to insert bases at random
Term
Photoreactivation Repair
Definition
repairs damage from UV radiation and occurs in blue light
Term
Photoreactivation enzyme (PRE)
Definition
Photon activates and this enzyme cleaves the T-dimers and DNA ligase to fill in gap
Term
Excision repair
Definition
dukaryotic dna repairs
Term
Base chain repair (BCR)
Definition
which correct damage to bases created by free radicals
Term
Nucleotide excision repair (NER)
Definition
corrects large problems caused by UV radiation
Term
DNA glysylase
Definition
a base pair recognition enzyme that recognizes many different types of mistaks and marks it for AP endonuclease
Term
AP endonuclease
Definition
comes in clips out errors by cleaving the phosphodiester bonds
Term
Ultraviolet repair (VUR) gene
Definition
in NER this makes the UVR enzyme that reconizes and clips out the dimers fromed by UV radiation
Term
Cancer
Definition
second leading cause of death behind heart disease
500,000 die a day
Term
Metastasis
Definition
when the cancer begins to move towards other areas of the body
Term
Benign tumor
Definition
a multicellular mass that does not metastasize
Term
Malignant tumor
Definition
a multicellular mass that does metatasize
Term
Reciprocal chromosomal translocation
Definition
genetic information exchanged between on chromosome and another
Term
Hematological neoplasms
Definition
group of diseases that cause leukemia and lymphoma cancers
Term
Brurkitt's Lymphoma
Definition
a known translocation between chromosome 8 and 2, 14, or 22
Term
c-myc gene
Definition
The translocated site in Brurkitt's Lymphoma
Term
Proto-oncogenes
Definition
these encode transcription factors that stimulate the expression of other genes and formulate ligands that stimulate cell division and reforms cell cycle regulators
Term
Oncogenes
Definition
when a mutation causes the proto-oncogenes to lose control of its functions
Term
Leukemia
Definition
cancer of the blood or bone marrow; dramatic increase of leukocytes
Term
Acute Leukemia
Definition
cancer with rapid increase of immature blood cells such as lymphoblasts, monoblasts and myeloblasts in children
Term
Chronic Leukemia
Definition
cancer with excessive build up of semi-mature WBC occurs in older people
Term
Lymphoblastic leukemia
Definition
this cancer occurs in lyphoid stem cells that form lymphoblast an occurs between 9p21 and 14q32-t(9;14)
Term
Lymphoid stem cells
Definition
lymphoblastic leukemia is found here and its translocation occurs 9p21 and 14q32-t(9;14)
Term
9p21 and 14q32-t(9;14)
Definition
translocation for lymphoblastic leukemia and their lymphoid stem cells occurs here
Term
Myeloid leukemia
Definition
cancer occurs in myeloid stem cells and translocation between chromosomes 9 and 22-t(9;22)forms myeloblasts, RBCs and platelets
Term
Myeloid stem cells
Definition
myeloid leukemia is found here and translocation occurs between chromosomes 9 and 22-t(9;22)
Term
Chromsome 9 and 22-t(9;22)
Definition
translocation for myeloid leukemia and their myeloid stem cells
Term
Acute lymphoblastic leukemia (ALL)
Definition
cancer occurs in the lymphoid stem cells, in chidren or older than 65 and occurs between chromosome 5 and 14q arms-t(12;14)
Term
Chromosome 5 and 14 q arms-t(5q-14q)
Definition
translocation for ALL
Term
Chronic lymphocytic leukemia (CLL)
Definition
adults over 55 in lymphoid stem cells that will become B cells, translocation between chromosome 12 and 14-t(12;14)
Term
Chromosome 12 and 14-t(12;14)
Definition
translocation for CLL
Term
Acute myelogenous leukemia (AML)
Definition
found in adult males where myeloid stem cell will become granulocytes and megakareyoctyes; translocation chromosome 8 and 21-t(8;21)
Term
Chromosome 8 and 21-t(8;21)
Definition
translocation of AML
Term
Chronic myelogenous leukemia (CML)
Definition
cancer found in adults and affects they myeloid stem cells that will become granulocytes; translocation chromosome 4, 9, and 22-t(4;9;22)
Term
Chromosome 4, 9 and 22-t(4;9;22)
Definition
translocation of CML
Term
T-cell polymorphocytic leukemia (T-PLL)
Definition
cancer caused by the accuulation of abnormal T lymphocytes; translocation between x chromosome and 14-t(X;14)
Term
X chromosome and 14-t(X;14)
Definition
translocation of T-PLL
Term
Large granular lymphocytic leukemia
Definition
rare cancer targets lymphoid stem cells involving all t cells nad natural killer cells; translocation chromosome 14 and 18-t(11;14)
Term
Chromosome 14 and 18-t(14;18)
Definition
translocation of large granular lymphocytic leukemia
Term
Hairy cell leukemia (HCL)
Definition
cancer where b cells look hairy under microscope and mutates lymphoid stem cells; translocation between chromosome 11 and 14-t(11;14)
Term
Chromosome 11 and 14-t(11;14)
Definition
translocation of HCL
Term
Adult T cell leukemia
Definition
cancer caused by a virus similar to HIV and t cells are infected and produce more viruses
Term
Human T-lymphotropic virus (HTLV)
Definition
the virus that causes adult t cell leukemia
Term
Lymphoma
Definition
cancer caused by malignant tumors of lymphatic system
Term
Hodgkin's lymphoma (HL)
Definition
one of the groups of lymphoma-5 subtypes
Term
Non-Hodgkin's lymphoma (NHL)
Definition
one of the groups of lymphoma-30 subtypes
Term
Follicular lymphoma
Definition
in this group one subtype of NHL's is caused by mutated B cells: centrocytes and centroblasts; translocation between chromosome 11(q13) and 14(q32)
Term
Chromosome 11(q13) and 14(q32)-t(11;14)(q13;32)
Definition
translocation of follicular lymphoma
Term
Epstein-Barr virus (EBV)
Definition
the virus that causes mononucleosis; known as the kissing disease; translocation chromosome 11(q21) and 18(q21)
Term
Chromosome 11(q21) and 18(q21)-t(11;18)(q21;q21)
Definition
translocation of EBV
Term
Precursor T-cell lymphoma
Definition
cancer associatedc with lymphoid stem cells, children, large tumors; translocation chromosome 8(q24) and 14(q32)
Term
Chromosome 8(q24) and 14(q32)-t(8;14)(q24;32)
Definition
translocaiton of precursor t-cell lymphoma
Term
Tumorigenic
Definition
A malignant cell
Term
tumorigeneisis
Definition
the growth of a malignant cell
Term
hereditary nonpolyposis colorectal cancer
Definition
an example of genomic instability caused by mutations of genes that control DNA repairs and is autosomal dominant
Term
MSH2
Definition
enzyme involved in mismatch repairs
Term
MSH6
Definition
enzyme involved in mismatch repairs
Term
MLH1
Definition
enzyme involved in mismatch repairs
Term
MLH3
Definition
enzyme involved in mismatch repairs
Term
Epigenetics modification
Definition
a study of factors that effect gene expressions in a heritable manner but do not always alterthe nucleotide sequence of DNA
Term
BRCA1
Definition
enzyme involved in dna repairs
Term
Differentiated cells
Definition
the result of stem cell specialization
Term
G1/S check point
Definition
first checkpoint for cells undergoing mitosis which monitors cell size and checks for replication
Term
G2/M checkpoint
Definition
second checkpoint where mistakes in dna are checked for and then m cyclin binds with m kinase and activates to push cell into mitosis
Term
M checkpoint
Definition
third checkpoint checks spindle and kinetochore microtubules to see if formed correctly
Term
G-0
Definition
when cell stops dividing or when does not pass checkpoints
Term
Apoptosis
Definition
programmed cell death
Term
Cyclin D1
Definition
found in breasts, esophagus and lungs, can cause cancer if g protein is broken and always in "on" mode
Term
Cyclin E
Definition
found in breasts, blood cells, digestive tract; if produced uncontrollably it will promote cancer here
Term
Caspases (cystein-aspartic proteases)
Definition
enzymes that trigger apoptosis
Term
Pro-caspases
Definition
pre-phase of caspases
Term
Initiator caspases
Definition
enzymes used to activate the pro-caspases to turn on process of apoptosis
Term
CASP2
Definition
pro-caspase
Term
CASP8
Definition
pro-caspase
Term
CASP9
Definition
pro-caspase
Term
CASP 10
Definition
pro-caspase
Term
Effector caspases
Definition
activated by the intiator caspases and are directly involved in pushing the cell into apoptosis
Term
CASP3
Definition
intiator caspase
Term
CASP6
Definition
intiator caspase
Term
CASP7
Definition
intiator caspase
Term
Inhibitor caspases
Definition
enzyme that stops apoptosis
Term
CASP4
Definition
inhibitor caspase
Term
CASP5
Definition
inhibitor caspase
Term
death receptors
Definition
G protein complexes that trigger a cascade reaction that ends in apoptosis
Term
tumor necrosis factor receptor (TNFR)
Definition
an example of a death receptor
Term
TNF-RI
Definition
a death receptor found in every tissue in the body
Term
TNF-R2
Definition
a death receptor found only in immunological cells
Term
Tumor necrosis factor
Definition
ligand that attaches to TNFR located on chromosome 8
Term
Fas receptors
Definition
death receptor located on chromosome 10
Term
Fas ligand
Definition
an integral protein activates Fas receptors
Term
TRAIL receptor
Definition
a death receptor located on chromosome 3 and consists of TRAIL-RI and TRAIL-II
Term
TRAIL-RI
Definition
Result in activation of CASP8 or CASP10
breaks down cytoskeleton structures
Term
TRAIL-RII
Definition
Result in activation of CASP8 or CASP10
breaks down cytoskeleton structures
Term
TRAIL-R (TNF-related apoptosis-inducing ligand)
Definition
activates TRAIL recpetors
Term
Apoptosis resistant
Definition
this is what tumor cells become after first chemotherapy treatment, as a result it grows
Term
ras proto-oncogene
Definition
most common mutated gene found in tumors
Term
platelet derived growth factor or epidermal growth factor
Definition
growth hormones that are triggered which is a ligand signal molecule that binds to G protein
Term
Nucleotide exchange factors
Definition
the result of binded G protein complex
Term
Nuclear transcription factors
Definition
targets the expression of genes whose products push cells into cell cycle
Term
P53 gene
Definition
defective tumor suppressor that creates p53 protein
Term
P53 protein
Definition
a transcription factor that stimulates the production of 50 different products
Term
p21
Definition
blocks the activity of S kinase and allows cell to do DNA repairs
Term
Mdm2
Definition
when bound to p53 protein it tags p53 for degradation
Term
BAX (gene)
Definition
causes cell to go into apoptosis via p53 activation
Term
Bcl2(genes)
Definition
causes cell to go into apoptosis via p53 activation
Term
BAX (protein)
Definition
are formed by p53 and Bax gene
Term
Bcl2 (protein)
Definition
are formed by p53 and Bc12 gene
Term
Nitrosamines
Definition
cancer causing agent commonly found in man-made products
Term
aflatoxins
Definition
cancer causing agent produced by mold
Term
radon gas
Definition
radioactive substance, a noble gas that is a product from decayed uraniu, that floats up and gets trapped inside home
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