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Gene organization.
Dr. Audia Oct 4 and 9
19
Biology
Graduate
10/24/2006

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Term
What is a polycystronic message?
Definition
One mRNA gives rise to multiple proteins.
Term
How can the same gene code for different proteins in eukaryotes?
Definition
You can have multiple splice variants that include different assortments of introns.
Term
Why does having 2 copies of the same gene allow a gene to develop new functions?
Definition
It releases the selection pressure, allowing one gene to accumulate mutations without disrupting normal functioning.
Term
What is a pseudogene?
Definition
It is a duplicate copy of another gene that has mutated to the point where it is no longer functional (eg. stop codons in the middle of a gene) but it is still recognizable.
Term
On average, is more space in a gene devoted to introns or exons?
Definition
Introns
Term
3 examples of genes that humans have tandemly repeated:
Definition
-tRNA
-rRNA
-histones
Term
What are SINES and LINES?
Definition
They are short interspersed nuclear elements and long interspersed nuclear elements. These are the two types of mammalian moderately repeated DNA, which consists of families of repeat elements that are similar but not identical and dispersed throughout the genome via retrotransposition.
Term
What does transcriptionally active DNA look like?
Definition
"beads on a string."
Term
In DNA footprinting, what is labeled with P32?
Definition
Just one end of one strand of the DNA sequence.
Term
3 possible types of histone modifications:
Definition
Methylation, phosphorylation, and acylation
Term
What happens if you treat a DNA/protein complex with formaldehyde?
Definition
It forms crosslinks and bonds more tightly.
Term
How do you reverse the formaldehyde induced crosslinks between protein and DNA?
Definition
Boil it with SDS
Term
How does a retrovirus prime the DNA copy of its RNA genome?
Definition
The reverse transcriptase uses tRNA attached to its RNA genome as a primer.
Term
How does the second strand of a DNA copy of a retrovirus get primed?
Definition
The other end of the first strand primes it.
Term
Are Alu elements LINES or SINES?
Definition
SINES
Term
What makes retrotransposons different from retroviruses?
Definition
Retrotransposons do not have the ability to make a protein coat, so they can only move around in a single cell and its descendants.
Term
2 ways that viruses could cause cancer:
Definition
-If a viral promoter hops in downstream from an oncogene or cell cycle gene
-If they bring a copy of a eukaryotic gene with them that's disregulated (eg vSrc
Term
How do Alu elements allow 2 copies of the same gene to end up on one chromosome?
Definition
They repeat often in between genes. They can line up and cause unequal crossover and unequal recombination.
Term
What portion of the human genome consists of repeat DNA sequences?
Definition
1/2
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