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Final review
Overview of key terms for collegiate level Genetics course
75
Biology
Undergraduate 2
04/29/2014

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Term
auxotroph
Definition
a bacteria that does not contain all the essential nutrients needed to support growth i.e. amino acids (his+)
Term
prototroph
Definition
a bacteria that contains all of the essential nutrients needed to support growth i.e. amino acids (his -)
Term
horizontal gene transfer
Definition
the transfer of genetic information between different species (almost always bacteria)
Term
vertical gene transfer
Definition
the genetic transfer from mother cell to daughter cell or from parent to offspring
Term
Conjugation
Definition
A type of horizontal gene transfer in bacteria that involves direct contact between two cells and results in a one way gene transfer. (The presence of F+ and F- must be present)
Term
Transduction
Definition
a type of horizontal gene transfer in bacteria that involves the exchange of genetic material by phages carrying genetic material from one cell to another
Term
Transformation
Definition
a type of horizontal gene transfer in bacteria in which genetic material from dead bacteria cells is taken up from the environment (naturally or artificially)
Term
F+
Definition
In conjugation in bacteria these strains of cells contain the fertility factor which is needed to donate genetic information (not to receive genetic information) after conjugation this cell remains F+
Term
F-
Definition
in conjugation between bacteria this strain of cell does not contain a fertility factor and therefore acts as the recipient of the genetic information. After conjugation this cell becomes F+
Term
Steps of conjugation (5)
Definition
1. the F+ cell forms a connecting bridge between the itself and the F- cell
2. The F+ cell cuts one strand of DNA from its plasmid and relaxase protein binds to its DNA
3. The single stranded DNA enters the transporter channel (between the inner and outer membranes in E. Coli)
4. The single stranded DNA is transferred across the pilus while the F+ DNA is being replicated
5. The donor strand becomes circularized into recipient plasmid and replicates. The F factor is re-established in the donor cell, both are now F+
Term
lytic bactereiophage
Definition
phage infects bacteria, hijacks the bacteria's organelles, packages their newly replicated DNA into a protein capsid and lyse (break out of the cell)
Term
Lysogenic bacteriophage
Definition
phage infects bacteri, inserts its genetic material into the host plasmid, and replicates with the host chromosome.
Term
Co-transduction
Definition
Sometimes bacteriophage can transfer two genes to the host bacteria, this is only possible if the genes are close together on a chromosome. This phenomenon can tell researchers whether two genes are located closely together on a chromosome.
Term
Steps of transformation (6)
Definition
1. DNA binds to bacterial surface
2. One strand of DNA is degraded by endonuclease
3. The single strand of DNA is taken up into the cell
4. The DNA recombines with the host chromosome.
5. The cell transforms
6. Genes that are close together will be co-transformed.
Term
Hfr strains
Definition
The result when F factor is integrated into the host's genome
Term
Metacentric
Definition
A chromosome in which the centromere is located roughly in the middle
Term
Acrocentric
Definition
A crhomosome in which the centromere is located to the left or right of the center
Term
Telocentric
Definition
A chromosome in which the centromere is located roughly at either end.
Term
Deletion
Definition
The loss of a chromosome segment
Term
Duplication
Definition
The repetition of a chromosomal segment as compared to the normal parental chromosome
Term
Inversion
Definition
The change of directions of a chromosomal segment
Term
Translocation
Definition
A segment of one chromosome becomes attached to another chromosome (simple and reciprocal)
Term
Simple translocation
Definition
When a segment of a chromosome is transferred to another
Term
Reciprocal translocation
Definition
When two segments (one from each chromosome) switch places
Term
DNA double strand break (effects)
Definition
The result of environmental x-rays and things of the like. Result in terminal deletions and intersitial deletions
Term
When crossing over goes wrong (effects)
Definition
Can result in a deletion and a duplication
Term
Errors in DNA replication (effects)
Definition
can cause small deletions
Term
Consequences of chromosomal deletions
Definition
If homozygous - almost always lethal (essential genes may lie within that regio)
If hetrozygous - often harmful (instead of two doses of a gene only one is left the remaining copy could mutate or could become homozygote by mitotic recombination)
Term
Consequences of inversions
Definition
Most harmless form of mutation - cross over leads to gene deletion or duplication and can affect the function of the chromosome
Term
Causes and effects of translocations
Definition
DNA double stranded break and faulty repair. Occurs in rare recombination between non homologous chromosomes during meiosis. The consequences vary depending on the region of DNA affected. May not have a gain or loss of genetic material and can produce defective gametes.
Term
Robertsonian Translocations
Definition
2 non homologous acrocentric chromosomes fuse to become one long metacentric chromosome. (Familial down syndrome)
Term
Euploid
Definition
Organisms containing a complete set of chromosomes
Term
Aneuploid
Definition
An organism with either an incomplete set or extra chromosomes
Term
alloploid
Definition
polyploid containing chromosomes from different species
Term
dosage compensation
Definition
a process in which cells adjust the uneven X chromosome dosage between sexes.
Term
Fredrick Griffith's Experiments
Definition
Injected mouse with rough strain (non virulent) --> mouse lives. Inject with smooth strain (virulent) --> mouse dies. Inject with heat killed rough strain --> mouse lives. Inject with heat killed smooth strain and live rough strain --> mouse dies. Evidence that DNA is genetic material (transformation of virulent strain is taken up by the nonvirulent rough strain).
Term
Avery, McCleod, McCarty
Definition
Repeated the findings of Frederick Griffith but added another step. When the strains were treated with an enzyme that degrades proteins or RNA --> virulent strain still transformed. When strains were treated with an enzyme that could degrade DNA --> Transformation didn't occur
Term
Hersey-Chase Experiment
Definition
(transduction) Evidence that DNA carry genetic information. Labeled the protein capsid with radioactive Sulfur which is found in proteins and labeled DNA with radioactive Phosphorus (found in deoxynucleotides). After the phages infected the bacteria, the scientists determined that only the radioactive Phosphorus was found inside the bacteria and the Sulfur.
Term
Type of bond between dioxynucleotides
Definition
Phosphodiester
Term
Packaging of a chromosome (least to most)
Definition
DNA (2nm) --> Nucleosomes (DNA wrapped around histone proteins) (11nm) --> 30 nm fiber --> radial loops (300 nm) --> chromosome (700 nm)
Term
Plieotrophy
Definition
One gene that influences many seemingly unrelated phenotypic traits
Term
Composition of chromosomes
Definition
1/3 DNA, 2/3 protein, trace of RNA
Term
Composition of chromosomes
Definition
1/3 DNA, 2/3 protein, trace of RNA
Term
Composition of chromosomes
Definition
1/3 DNA, 2/3 protein, trace of RNA
Term
Euchomatin
Definition
Lightly compact region on a chromosome
Term
Heterochromatin
Definition
Tightly condensed regions on a chromosome (telomeres and centromere)
Term
Transcription
Definition
Conversion of DNA to mRNA
Term
Translation
Definition
Conversion of RNA to proteins
Term
Regulatory Sequence in DNA
Definition
The site of binding for regulatory proteins (which regulate the rate of transcription). These sequences can be found in a variety of locations.
Term
Promoter (DNA)
Definition
The site for RNA polymerase binding - signals the beginning of transcription.
Term
Terminator
Definition
Signals the end of transcription
Term
Ribosomal binding site
Definition
Found on mRNA - translation begins here with the binding of a ribosome. In eukaryotes the ribosome scans the mRNA for a start codon.
Term
Alternative Splicing
Definition
Can result in a different protein from the same gene
Term
Violations of the Central Dogma (3)
Definition
1.Viruses with RNA genomes (HIV) use reverse transcriptase to make a DNA copy of its genome after infection.
2. Telomerase uses RNA template to synthesize DNA repeats at chromosome ends
3. Retro-transposons
Term
Depurination
Definition
loss of a purine (common) results in an apurinic site which could be filled with whichever nucleotide is available
Term
deamination
Definition
loss of an amino group (cytosine --> uracil)
Term
Trinucleotide repeats
Definition
Hot spots for mutations may create a hairpin loop
Term
Ames Test
Definition
Plate specific bacteria on minimal media and in the presence of certain amino acids to see what type of autotroph the bacteria is.
Term
Ames Test
Definition
Plate specific bacteria on minimal media and in the presence of certain amino acids to see what type of autotroph the bacteria is.
Term
Direct repair
Definition
Fixing of thymidine dimers caused by UV
Term
Base excision repair
Definition
Fixes abnormal or incorrect bases
Term
Nucleotide excision repair
Definition
fixes incorrect neucleotides
Term
Mis-match repair
Definition
repair during DNA replication in E. Coli - corrects mistakes made by DNA polymerase during replication
Term
Double strand break repair (non-homologous end joining)
Definition
Proteins bind to double strand breaks, trims back a few bases, joins the ends, fills in and ligates, results in the loss of a few nucleotides.
Term
Double strand break repair (homologous recombination repair)
Definition
Double strand breaks are trimmed to make single strand regions. One strand from a sister chromosome is borrowed to use as a template. Fill in gaps. Cut and ligate.
Term
Mosaic
Definition
the presence of two or more genotypes of cell from a single zygote in an organism. Can arise in somatic cells in one of 3 ways
1. mitotic nondisjuncion
2. x-inactivation
3. mitotic recombination
Term
homeoic gene
Definition
A gene that plays a special role in specifying the final identity of a body region
Term
Pax 6 gene
Definition
Found to affect the development of eyes in rodents and humans
Term
directional selection
Definition
chooses individuals at one end of the phenotypic range
Term
disruptive selection
Definition
favors extreme over intermediate phenotypes
Term
stabilizing selection
Definition
selects intermediate phenotypes over extremes
Term
assortative mating
Definition
when individuals do not mate randomly
Term
positive assortative mating
Definition
when individuals are more likely to mate with those who are similar phenotypically to themselves
Term
negative assortative mating
Definition
when individuals are less likely to make with those who are similar to them phenotypically
Term
inbreeding depression
Definition
decrease in reproductive success as a cause of inbreeding
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