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February Midterm
Go get 'em
65
Biology
Undergraduate 1
02/07/2014

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Term
Absorption Spectrum
Definition
curve representing the amount of light absorbed at each wavelength
Term
Activation Energy
Definition
the initial input of energy required to start a reaction
Term
Active Transport
Definition
the mechanism by which ions and molecules move against the concentration gradient across a membrane, from one side with the lower concentration to the side with the higher concentration
Term
Agarose gel electrophoresis
Definition
technique by which DNA, RNA, or molecules are seperated in a gel subjected to an electric field
Term
Alcoholic Fermentation
Definition
reaction in which pyruvate is converted into ethyl alcohol and CO2 in a two step series that also converts NADH into NAD'
Term
Allosteric Regulation
Definition
specialized control mechanism for enzymes with an allosteric site, a regulatory site outside the active site, that may either slow or accelerate activity depending on the enzyme
Term
Anabolic Pathway
Definition
type of metabolic pathway in which energy is consumed to build complicated molecules from simpler ones; often called a biosynthetic pathway
Term
Anaerobe
Definition
an organism that does not require oxygen to live
Term
Adenosine Triphosphate
Definition
the primary agent that couples exergonic and endergonic reactions
Term
ATP Synthase
Definition
a membrane-spanning protein complex that couples the energetically favourable transport of protons across a membrane to the synthesis of ATP
Term
Biosphere
Definition
all regions of Earth's crust, waters, and atmosphere that sustain life
Term
Carotenoid
Definition
molecule of yellow orange pigment by which light is absorbed in photosynthesis
Term
Catabolic Pathway
Definition
type of metabolic pathway in which energy is released by the breakdown of complex molecules to simpler compounds
Term
Catalyst
Definition
substance with the ability to accelerate a spontaneous reaction without being changed by the reaction
Term
Cellular Respiration
Definition
the process by which energy rich molecules are broken down to produce energy in the form of ATP
Term
Chaperone Protein
Definition
'guide' protein that binds temporarily with new synthesized proteins, direction their conformation toward the correct tertiary structure and inhibiting incorrect arrangements as the new proteins fold
Term
Chemiosmosis
Definition
Ability of the cells to use the proton motive force to do work
Term
Chlorophyll
Definition
molecule of green pigment that absorbs photons of light in photosynthesis
Term
Chloroplast
Definition
the site of photosynthesis in plant cells
Term
Citric Acid Cycle
Definition
series of reactions in which acetyl groups are oxidized completely to carbon dioxide and some ATP molecules are synthesized
Term
Cofactor
Definition
an inorganic or organic nonprotein group that is necessary for catalysis to take place
Term
Coupled Reaction
Definition
reaction that occurs when an exergonic reaction is joined to an endergonic reaction, producing an overall reaction that is exergonic
Term
cyclic AMP
Definition
in particular signal transduction pathways, a second messenger that activates protein kinases, which elicit the cellular response by adding phosphate groups to specific target proteins. cAMP functions in one of two major G protein-coupled receptor-response pathways
Term
Cyclic Electron Transport
Definition
an electron transport pathway associated with PS 1 in photosynthesis that produced ATP without the synthesis of NADH
Term
Cytochrome
Definition
protein with a heme prosthetic group that contains an iron atom
Term
Endothermic
Definition
reactions that absorb energy
Term
Enthalpy
Definition
potential energy in a system
Term
entropy
Definition
disorder, in thermodynamics
Term
Enzyme
Definition
protein that accelerates the rate of a cellular reaction
Term
Exergonic Reaction
Definition
reaction that has a negative ΔG because it releases free energy
Term
Exothermic
Definition
processes that release energy
Term
Fatty Acid
Definition
one of two components of a neutral lipid, containing a single hydrocarbon chain with a carboxyl group linked at one end
Term
Feedback Inhibition
Definition
in enzyme reactions, regulation in which the product of a reaction acts as a regulator of the reaction.
Term
Fermentation
Definition
process in which electrons carried by NADH are transferred to an organic acceptor molecule rather than to the electron transport system
Term
First Law of Thermodynamics
Definition
energy can be transferred and trandformed but cannot be created or destroyed
Term
Free Energy
Definition
the energy in a system that is available to do work
Term
Oxidative Phosphorylation
Definition
synthesis of ATP in which ATP synthase uses an H+ gradient built by the electron transfer system as the energy source to make ATP
Term
Passive Transport
Definition
the transport of substances across cell membranes without expenditure of energy, as in diffusion
Term
Phosphorylation
Definition
the addition of a phosphate group to a molecule
Term
Photoautotroph
Definition
a photosynthetic organism that uses light as its energy source and carbon dioxide as its carbon source
Term
Pigment
Definition
a molecule that can absorb photons of light
Term
Protein Kinase
Definition
enzyme that transfers a phosphate group from ATP to one or more sites on particular proteins
Term
Reduction
Definition
the addition of electrons to a substance
Term
Rubisco
Definition
an enzyme that catalyzes the key reaction of the Calvin Cycle, carbon fixation, in which CO2 combines with RuBP to form 3-phosphoglycerate
Term
Semen
Definition
lol jk
Term
Southern Blot Analysis
Definition
technique in which labelled probes are used to detect specific DNA fragments that have been separated by gel electrophoresis
Term
Strict Anaerobe
Definition
organism in which fermentation is the only source of ATP
Term
Substrate-Level Phosphorylation
Definition
an enzyme-catalyzed reactiont that transfers a phosphate group from a substrate to ADP
Term
Primitive
Definition
being the first or earliest of the kind or in existance
Term
Dimer
Definition
a molecule composed of two identical simpler molecules
Term
Phototransduction
Definition
light is converted into electrical signals
Term
Can you ever use an exergonic reaction to drive an endergonic reaction?
Definition
No, this reaction is just exergonic
Term
When you phosphorylate something, do you make it more or less reactive?
Definition
more
Term
Describe a situation in which an endergonic reaction would occur in a cell
Definition
Endergonic reactions do not occur in cells *troll face*
Term
In what step of cellular respiration are all the carbons from pyruvate lost?
Definition
the citric acid cycle
Term
What are the three structural component of ATP?
Definition

- ribose sugar

- adenine nucleotide

- 3 phosphate groups

Term
Where is the Calvin Cycle in photosynthetic bacteria?
Definition
cytosol
Term
How many reductions of CO2 make one G3P?
Definition
three
Term
What type or organism does almost half of all photosynthesis?
Definition
phytoplankton
Term
There is more photosynthesis near the poles because there are more nutrients like iron available to photosynthetic organisms. Explain why a photosynthetic organism would need iron.
Definition
Iron is located in heme groups, which are found in some cofactors that take place in photosynthetic pathways
Term
What are the three ways the hydrogen gradient is produced during photosynthesis?
Definition

- protons into the lumen by the plastoquinone

- oxidation of water

- removal of a proton from the stroma for each NADPH synthesized 

Term
Apoprotein
Definition
a protein that requires a cofactor
Term
Constitutive Gene Expression
Definition
a gene that is always expressed ---> housekeeping proteins
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