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Exam Prep
Lecture 1 & 2
60
Biology
Undergraduate 2
11/30/2013

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Term
Replication
Definition
The Genotypic function.
Store and transmit genetic information.
Term
Gene Expression
Definition
Phenotypic Funtion
Dictates development of the organism.
Term
Mutation
Definition
Evolutionary Function.
Genetic material changes to adapt to environment
Term
Mendel's Laws
Definition
1)Unit Factors in pairs
2)Dom/Recess.
3)Segregation
4) Independent Assortment
Term
Miescher's Contribution
Definition
Isolated DNA nuclein, and discovered its presence in other cells
Term
DNA Composition
Definition
Sugar, Base, Phosphate
Term
dAMP
Definition
deoxyadenosine monophosphate
Term
Is incubation in the mouse required for transformation to occur?
Definition
Nope! Can occur in vitro, bitches
Term
Avery, MacLeod, and McCarty proved that DNA was the transforming principle by:
Definition
...using enzymes to inhibit the function of proteins, RNA, and DNA
(When DNA was inhibited, virus was not passed on)
Term
In Fir
hy did the heat-killed virulent strain still kill the mouse when mixed with a live 'harmless' II-R strain?
Definition
The 'harmless' strain was able to 'take-up' the "genetic material" of the heat-killed strain, and reproduced a polysaccharide coat, capable of protecting the virus.
Term
True or False: The Hershey and Chase bacteriophage experiment showed that the genetic material is in the protein of viruses
Definition
False: It was proved to be in the DNA
Term
Why and how, in the Hershey and Chase experiment, were radioactive phosphorus and radioactive sulfur used to identify the genetic material in organisms?
Definition
Radioactive sulfur only showed up in proteins, and radioactive phosphorus only showed up in DNA. This is because there is no P is proteins, and no S in DNA, so the radioactivity in each respective experiment, would show where the phosphorus and sulfur were present. The presence of radioactivity inside the cell shows genetic transfer, and when identified, that radioactivity turned out to be Phosphorus, and by extension, DNA. Woah holy shit.
Term
Who discovered RNA's ability to contain and transmit genetic information?
Definition
Heinz-Frankel-Conrat
Term
What was involved in the experiment that discovered RNA's genetic properties?
Definition
Tobacco leaves infected with Tobacco Mosaic Virus (TMV), and those not affected, are each stripped down to proteins and RNA. Proteins and RNA of the different individuals are mixed. The individuals with infected RNA and normal proteins produce strictly infected offspring, therefore, RNA is involved in genetic material and transfer.
Term
True or False: Nucleotides are joined by Phospho-ester bonds?
Definition
False, bitch - phosphodiester, eh?
Term
Nucleotides are joined by _' to _'
Definition
5' to 3'
Term
Describe the polarity of a molecule of DNA or RNA
Definition
5' phosphate to 3' hydroxyl
Term
According to ____ ______, the amounts of guanine and adenine in DNA are identical.
Definition
Erwin Chargaff

P.S. A+T = G+C
Term
What is Chargaff's second rule
Definition
The composition of DNA varies from one species to another
Term
William Atsbury performed ____ _____________ on DNA, and was therefore able to determine DNA's ________ _________
Definition
a) x-ray diffraction
b) structural information
Term
Whose work on the structure of DNA, identified the distance between nucleotides of 3.4 angstroms (0.34 nanometers)
Definition
William Atsbury
Term
Who continued Atsbury's work on x-ray diffraction? (two names)
Definition
Rosalind Franklin, and Maurice Wilkins
Term
What did Rosalind Franklin and Maurice Wilkins contribute?
Definition
Prepared highly ordered DNA fibres that showed more detail in diffraction patterns.
Term
Who discovered DNA's double helix?
Definition
James Watson and Francis Crick
Term
Watson and Crick discovered what about the diameter of DNA's helix?
Definition
It was about 2 nanometers
Term
The helix makes one complete turn every ____ nanometers, therfore ___ nucleotides per turn.
Definition
a) 0.34
b) 10
Term
Watson and Crick proposed what 4 facts about DNA?
Definition
1) DNA is a double helix
2) two strands are antiparallel
3) sugar-phosphate backbone
4) bases held together by H bonds
Term
The interior of DNA is _________, and the exterior of DNA is __________(hydrophobic/hydrophilic).
Definition
a) hydrophobic
b) hydrophilic
Term
Describe the solubility of DNA
Definition
- hydrophilic sugar-phosphate backbone
- hydrophobic bases stacked in interior
Term
Describe the stability of DNA
Definition
- many H+ bonds between base pairs
- hydrophobic interactions between base pairs
Term
What did Watson & Crick's discovery suggest?
Definition
the complementary strands suggests that there is likely a copying mechanism for DNA
Term
What is the structure of a prokaryotic chromosome?
Definition
circular
Term
True or False
prokaryotes are diploid
Definition
false - monoploid
Term
Given that an E.coli cell is 2umX1um, and E.coli DNA is 1.5mm, what can you conclude about its DNA?
Definition
the DNA is highly condensed
Term
What enzymes cut, rotate and rejoin DNA for compaction?
Definition
topoisomerases
Term
Describe the supercoiling of DNA
Definition
1. strand of circular DNA is nicked
2. One strand is rotated 360 clockwise,one is rotated 360 counterclockwise
3. DNA ligase rejoins the nicked ends
Term
True or False
Bacterial DNA is positively supercoiled
Definition
false - negatively
Term
Bacterial DNA is both ____ and ____
Definition
supercoiled and folded
Term
If RNase partially digests bacterial DNA, what will occur?
Definition
One loop will be cleaved and the chromosome will partially unfolded but remain supercoiled
Term
If DNase partially digests bacterial DNA, what will occur?
Definition
One loop will be nicked and become uncoiled
Term
How many base pairs are found in human DNA? How many genes?
Definition
3.3X10^9
35 000 genes
Term
At what stage of mitosis is DNA most compact, and to what degree is it compacted?
Definition
metaphase, compacted 10 000X
Term
True or False

There are two DNA molecules found in each eukaryotic chromosome
Definition
False

one molecule of DNA per chromosome
Term
What is chromatin composed of?
Definition
DNA + protein
Term
Describe the compaction of DNA
Definition
-nucleosome core consists of 146 base pairs wrapped 1 3/4 turns around an octamer of histones
-nucleosomes are connected by linker DNA 8-114 pairs long
Term
What are the 4 histones found within the nucleosome core particle?
Definition
2X H2a
2X H2b
2X H3
2X H4
Term
What does the H1 protein do?
Definition
stabilizes the nucleosome structure
Term
Which of the following are found in chromatin?
a) linker DNA
b) H4 protein
c) transcriptional regulators
d) chromatin modifiers
e) all of the above
Definition
e)
Term
Are histones positively or negatively charged?
Definition
positively charged
Term
Which two amino acids are found in histone proteins?
Definition
lysine and arginine
Term
Describe 3 things about histones
Definition
-highly conserved in all eukaryotes
-replaced by protamines in sperm
-histone tails wrap around the DNA molecule
-can be enzymatically modified
Term
What effect would the addition of an acetyl, methyl or phosphate group have on a histone?
Definition
they would be modified
Term
What do chromatin remodeling complexes do to histone proteins?
Definition
they displace the histone, exposing the underyling DNA sequences to polymerases and other enzymes
Term
What are the three levels of chromosome condensation?
Definition
-11 nm nucleosomes
-30nm chromatin fiber (nucleosome fibers stabilized by H1)
-metaphase chromosome (chromatin fibers wrapped around a protein scaffold)
Term
What are the two models of chromatin fiber structure?
Definition
-solenoid model (lined up in two rows)
-zig zag model
Term
How might the chemical modification of histone tails or H1 affect the structure of chromatin?
Definition
-expand or contract
Term
True or False
Chromatin structures are static, cannot change between solenoid & zig zag form
Definition
False
They can expand or contract depending on the modifications of H1 and histone tails
Term
Where do spindle microtubules attach?
Definition
at the centromeres
Term
True or False

DNA sequence is conserved in plants but not in animals
Definition
False

conserved in both plants and animals
Term
Why is the formation of the centromere/microtubule complex important?
Definition
For the proper separation of sister chromatids at anaphase
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