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Exam 3
Viruses
35
Biology
Undergraduate 3
12/05/2012

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Term

Does the T4 Bacteriophage make its own DNA-dependent DNA polymerase or use the host cell's?

Definition
Its gemone encodes its own
Term
What kind of life cycle does the T4 virus have?
Definition
lytic
Term
Which virus has terminally redundant genome and forms a concatamer?
Definition
T4
Term
What two life cycles can the lambda bacteriophage undergo?
Definition
Lytic and lysogenic
Term
What virus has a double stranded DNA genome with cohesive ends and can circularize upon entry of the host?
Definition
Lambda
Term
In the Lambda virus what factors favor the lysogenic cycle?
Definition
The lambda repressor(CI) and high levels of CII
Term
In the Lambda virus what factor favors the lytic cycle?
Definition
Cro repressor, drop of CI (lambda repressor)
Term
What cells does Herpes virus target?
Definition
Epithelial and nerves
Term
What to cycles can Herpes undergo?
Definition

Productive Herpes creates new virions and lysis the host cell 

 

Latent herpes is an inactive form in neuronal cells that cannot be detected but can be induced to enter the productive cycle 

Term
When does Herpres virus double stranded DNA genome circularize?
Definition
When it enters the nucleus of the host
Term
How does Herpes virus enter the host cell?
Definition
Via adsorption which is mediated through membrane surface proteins
Term
Where does the herpes virus get its outer envelope from?
Definition
From the Golgi Apparatus of the host cell
Term
How are NCLD viruses unique?
Definition
They are much larger than most viruses, comparable to some bacteria. Their genome encodes all the enzymes it needs. Caused scientiests to rethink the definition of a cell virus
Term
What is the replicative form?
Definition
Found in viruses with single stranded DNA genomes. It is when the strand makes a copy of itself and becomes double stranded.
Term
What kind of genomes do the single stranded DNA viruses have?
Definition

parvovirus= (-) strand

bacteriophage ΦX174= (+) strand 

Filamentous fd bacteriophage= (+) strand 

Term
What two activities does RNA-dependent RNA polymerase have?
Definition
replicase and transcriptase
Term
What kind of genome does influenza have?
Definition
(-) strand RNA and segmented
Term
What membrane bound proteins does Influenza have?
Definition

hemagglutinin and neuraminidase 

 

hemagglutinin binds to host receptors 

neuraminidase hydroylzes mucus 

Term

Why is a new vaccine needed for Influenza every season?

 

Definition

It replicates its genome with an RNA-dependent RNA polyermase which doesn't have proofreading ability and incorporates many mistakes 

 

 

Term
How does the influenza virus enter the host cell?
Definition
It enters as an endosome through the cytoplasm and the change in pH causes a conformation change in the hemagglutinin which causes its contents to be released
Term
What virus steals the 5' cap from the host mRNA and with what protein?
Definition
Influenza virus via PB1. Used to prime the viral RNA for RNA-dependent RNA synthesis by PB1.
Term
How does the influenza virus leave the host cell?
Definition
It leaves by budding, takes some of the host cell's membrane.
Term

Retroviruses need to bring what two components with them?

 

Definition
Reverse transcriptase and integrase
Term
What activities does reverse transcriptase have?
Definition

RNA-dependent DNA polymerase

DNA-dependent DNA polymerase 

ribonuclease 

no proofreading ability--> mutation prone 

Term
What kind of membrane bound proteins does HIV have? What cells does it bind to?
Definition
gp 120 proteins that bind to CD4+ receptors found on T cells and macrophages
Term
What does HIV use as a primer for reverse transcriptase?
Definition
tRNA of the host cell
Term
What is the coreceptor used for HIV?
Definition
CCR5. Can also be used for endocytosis of the virus. If there is a mutation on this receptor it can make a cell resistant to HIV.
Term
How does HIV become AIDS?
Definition
Whent he gp120 gene is mutated so that it now binds to the receptor CLCX4 which causes those cells to lyse.
Term
What is a successful way of fighting HIV with antibiotics?
Definition

Design a drug that attacks the virus at different stages: 1) stops nucleic acid replication--> AZT

2)another can inhibit the protease that cleaves the long chain of connected proteins  

3) block the binding of HIV on CLCX4 and CCR5co-receptors of host cells 

Term
Group I Double stranded DNA
Definition
Herpes, Lambda bacteriophage, T4, NCLD (poxvirus)
Term
Group II Single Stranded DNA Virus
Definition
Bacteriophage ΦX174, filamentous bacteriophage fd, parvovirus
Term
Group III Single Stranded + RNA genome 
Definition
Bacteriophage Φ6 and rotavirus
Term
Group IV Single Stranded +RNA virus
Definition
Tobacco Mosaic Virus, Poliovirus 
Term
Group V Single Strand - RNA
Definition
Influenza
Term
Group VI Single Strand RNA Retrovirus 
Definition
HIV
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