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Exam 2
end of chapter 3 through chapter 6
107
Biology
Undergraduate 1
10/12/2010

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Term
Nucleotide
Definition
a molecule with a three-part structure: a five-carbon sugar, a phosphate functional group, and a nitrogen containing base that differs among the different types.
Term

Nucleotide

Definition
A subunit of which nucleic acids are composed; a phosphate group bonded to a sugar (deoxyribose in DNA), which is in turn bonded to a nitrogen-containing base (adenine, guanine, cytosine, or thymine in DNA). _________ are linked together, forming a strand of nucleic acid, by bonds between the phosphate of one _________ and the sugar of the next ______ 
Term
Adenosine Triphosphate (ATP)
Definition
A ribose nucleotide with three phosphate functional groups. This unstable molecule carries energy from place to place within a cell, storing the energy in bonds between its phosphate groups.
Term
Adenosine Triphosphate (ATP)
Definition
A molecule composed of the sugar ribose, the base adenine, and three phosphate groups; the major energy carrier in cells. The last two phosphate groups are attached by "high-energy" bonds.
Term
Nucleic Acid
Definition
An organic molecule composed of nucleotide subunits; the two common types of _____ ______ are ribonucleic acid (RNA) and deoxyribonucleic acid (DNA)
Term
Deoxyribonucleic Acid (DNA)
Definition
a molecule composed of deoxyribose nucleotides; contains the genetic information of all living cells.
Term
Ribonucleic Acid (RNA)
Definition
A molecule composed of ribose nucleotides, each of which consists of a phosphate group, the sugar ribose, and one of the bases adenine, cytosine, guanine or URACIL; involved in converting the information in DNA into protein; also the genetic material of some viruses
Term
Cell Theory
Definition
The scientific theory stating that every living organism is made up of one or more cells; cells are the functional units of all organisms; and all cells arise from preexisting cells
Term
Plasma Membrane
Definition
the outer membrane of a cell, composed of a bilayer of phosolipids in which proteins are embedded
Term
Cytoplasm
Definition
all of the material contained within the plasma membrane of a cell, exclusive of the nucleus
Term
Cytoplasmic fluid
Definition
the fluid portion of the cytoplasm; the substance within the plasma membrane exclusive of the nucleus and organelles; also called cytosol
Term
Prokaryotic
Definition
 Referring to cells of the domains Bacteria or Archaea. ______ cells have genetic material that is not enclosed in a membrane-bound nucleus; they also lack other membrane-bound organelles.
Term
Eukaryotic
Definition
referring to cells of organisms of the domain Eukarya (plants, animals, fungi, and protists.) _________ cells have genetic material enclosed within a membrane-bound nucleus and contain other organelles
Term
Organelle
Definition
a membrane-enclosed structure found inside a eukaryotic cell that performs a specific function
Term
Cytoskeleton
Definition
a network of protein fibers in the cytoplasm that gives shape to a cell, holds and moves organelles, and is typically involved in cell movement
Term
Cell Walls
Definition
Relatively stiff coatings that support and protect the delicate plasma membrane. The outer surfaces of plants, fungi,and some protists are covered with this nonliving coating
Term
Cilium, Cilia
Definition
a short, hair-like, motile projection from the surface of certain eukaryotic cells that contains microtubules in a 9 + 2 arrangement. The movement of ____ may propel cells through a fluid medium or move fluids over a stationary surface layer of cells
Term
Flagellum, Flagella
Definition

a long, hair-like, motile extension of the plasma membrane; in eukaryotic cells, it contains microtubules arranged in a

9 + 2 pattern. The movement of flagella propel some cells through fluids

Term
Nucleus
Definition
the membrane-bound organelle of eukaryotic cells that contains the cell's genetic material
Term
Nuclear Envelope
Definition
The double-membrane system surrounding the nucleus of eukaryotic cells; the outer membrane is typically continuous with the endoplasmic reticulum
Term
Nuclear pore complex
Definition
an array of proteins that line pores in the nuclear membrane and control which substances enter and leave the nucleus
Term
Chromatin
Definition
The complex of DNA and proteins that makes up eukaryotic chromosomes
Term
Chromosomes
Definition
A DNA double helix together with proteins that help to organize and regulate the use of DNA
Term
Nucleolus 
Definition
The region of the eukaryotic nucleus that is engaged in ribosome synthesis; consists of the genes encoding ribosomal RNA, newly synthesized ribosomal RNA, and ribosomal proteins
Term
Ribosome
Definition
A complex consisting of two subunits, each composed of ribosomal RNA and protein, found in the cytoplasm of cells or attached to the endoplasmic reticulum, that is the site of protein synthesis, during which the sequence of bases of messenger RNA is translated into the sequence of amino acids in a protein
Term
Ribosomal RNA
Definition
a type of RNA that combines with protein to form ribosomes
Term
Vesicles
Definition
A small, membrane-bound sac within the cytoplasm
Term
Endoplasmic Reticulum
Definition
A system of membranous tubes and channels in eukaryotic cells; the site of most protein and lipid synthesis
Term
Golgi Apparatus
Definition
A stack of membranous sacs, found in most eukaryotic cells, that is the site of processing and separation of membrane components and secretory materials
Term
Lysosomes
Definition
A membrane-bound organelle containing intracellular digestive enzymes
Term
Food Vacuole
Definition
A membranous sac, within a single cell, in which food is enclosed. Digestive enzymes are released into the vacuole, where intracellular digestion occurs
Term
Vacuoles
Definition
A vesicle that is typically large and consists of a single membrane enclosing a fluid-filled space.
Term
Contractile Vacuoles
Definition
A fluid-filled vacuole in certain protists that takes up water from the cytoplasm, contracts, and expels the water outside the cell through a pore in the plasma membrane
Term
Central Vacuole
Definition
a large, fluid-filled vacuole occupying most of the volume of many plant cells; performs several functions, including maintaining turgor pressure
Term
Mitochondrion/ Mitochondria
Definition
An organelle bounded by two membranes, that is the site of the reactions of aerobic metabolism
Term
Anaerobic
Definition
not using oxygen
Term
Aerobic
Definition
using oxygen
Term
Chloroplasts
Definition
The organelle in plants and plantlike protists that is the site of photosynthesis; surrounded by a double membrane and containing an extensive internal membrane system that bears chlorophyll
Term
Chlorophyll
Definition

A pigment found in chloroplasts that captures light energy during a photosynthesis; chlorophyll absorbs violet, blue, and red light but reflects green light

 

green color in plants

Term
Plastids
Definition
In plant cells, an organelle bounded by two membranes that may be involved in photosynthesis (chloroplasts) pigment storage, or food storage
Term
Nucleoid
Definition
The location of the genetic material in prokaryotic cells; NOT MEMBRANE ENCLOSED
Term
Fluid Mosaic Model
Definition
A model of cell membrane structure; according to this model, membranes are composed of a double layer of phospholipids in which various proteins are embedded. The phospholipid bilayer is a somewhat fluid matrix that allows the movement of proteins within it
Term
Phospholipid Bilayer
Definition
A double layer of phospholipids that forms the basis of all cellular membranes. The phospholipid heads, which are hydrophilic, face the water of extracellular fluid or the cytoplasm; the tails, which are hydrophobic, are buried in the middle of the bilayer
Term
Glycoprotein
Definition
A protein to which a carbohydrate is attached
Term
Receptor Protein
Definition
A protein, located in the membrane or the cytoplasm of a cell, that binds to specific molecules, triggering a response in the cell, such as endocytosis, changes in the metabolic rate, cell division, or electrical changes
Term
Recognition Protein
Definition
A protein or glycoprotein protruding from the outside surface of a plasma membrane that identifies a cell as belonging to a particular species, to a specific individual of that species, and in many cases to one specific organ within the individual.
Term
Enzyme
Definition
A biological catalyst, usually a protein, that speeds up the rate of specific biological reactions
Term
Attachment Protein
Definition
A protein in the plasma membrane of a cell that attaches either to the cytoskeleton inside the cell, to other cells, or to the extracellular matrix
Term
Transport Proteins
Definition
A protein that regulates the movement of water soluble molecules through the plasma membrane
Term
Channel Protein
Definition
A membrane protein that forms a channel or pore completely through the membrane and that is usually permeable to one or to a few water-soluble molecules, especially ions
Term
Carrier Proteins
Definition
A membrane protein that facilitates the diffusion of specific substances across the membrane. The molecule to be transported binds to the outer surface of the carrier protein; the protein then changes shape, allowing the molecule to move across the membrane
Term
Fluid
Definition
A liquid or a gas
Term
Solute
Definition
A substance dissolved in a solvent
Term
Solvent
Definition
A liquid capable of dissolving (uniformly dispersing) other substances in itself
Term
Concentration
Definition
The number of particles of a dissolved substance in a given unit of volume
Term
Gradient 
Definition
A difference in concentration, pressure, or electrical charge between two regions
Term
Concentration Gradient
Definition
The difference in concentration of a substance between two parts of a fluid or across a barrier such as a membrane
Term
Diffusion
Definition
The net movement of particles from a region of high concentration to that particle to a region of low concentration, driven by the concentration gradient; may occur entirely within a fluid or across a barrier such as a membrane
Term
Selectively Permeable
Definition
The quality of a membrane that allows certain molecules or ions to move through it more readily than others
Term
Passive Transport
Definition
The movement of materials across a membrane down a gradient of concentration, pressure, or electrical charge without using cellular energy
Term
Energy-requiring transport
Definition
The transfer of substances across a cell membrane using cellular energy; includes active transport, endocytosis, and exocytosis
Term
Simple Diffuson
Definition
The diffusion of water, dissolved gasses, or lipid-soluble molecules through the phospholipid bilayer of a cellular membrane
Term
Facilitated Diffusion
Definition
The diffusion of molecules across a membrane, assisted by protein pores or carriers embedded in the membrane
Term
Aquaporins
Definition
A channel protein in the plasma membrane of a cell that is selectively permeable to water
Term
Isotonic
Definition
Referring to a solution that has the same concentration of dissolved particles ( and therefore the same concentration of free water) as the cytoplasm of a cell
Term
Hypotonic
Definition
Referring to a solution that has a lower concentration of dissolved particles (and therefore a higher concentration of free water) than has the cytoplasm of a cell
Term
Hypertonic
Definition
Referring to a solution that has a higher concentration of dissolved particles ( and therefore a lower concentration of free water) than has the cytoplasm of a cell
Term
Active transport
Definition
The movement of materials across a membrane through the use of cellular energy, normally against a concentration gradient
Term
Endocytosis
Definition
The process in which the plasma membrane engulfs extracellular material, forming membrane-bound sacs that enter the cytoplasm and thereby move material into the cell
Term
Pinocytosis
Definition
The non-selective movement of extracellular fluid, enclosed within a vesicle formed from the plasma membrane, into a cell
Term
receptor-mediated endocytosis
Definition
The selective uptake of molecules from the extracellular fluid by binding to a receptor located at a coated pit on the plasma membrane and pinching off the coated pit into a vesicle that moves into the cytoplasm
Term
Phagocytosis
Definition
A type of endocytosis in which extensions of a plasma membrane engulf extracellular particles, enclose them in a membrane-bound sac, and transport them into the interior of the cell
Term
Exocytosis
Definition
The process in which intracellular material is enclosed within a membrane and fuses with it, releasing the material outside the cell
Term
Desmosome
Definition
A strong cell-to-cell junction that attaches adjacent cells to one another
Term
tight junction
Definition

A type of cell-to-cell junction in animals that prevents the movement of materials through the spaces between cells 

(water tight)

Term
Gap Junctions
Definition
A type of cell-to-cell junction in animals in which channels connect the cytoplasm of adjacent cells
Term
Plasmodesma
Definition
A cell-to-cell junction in plants that connects the cytoplasm of adjacent cells
Term
Energy
Definition
the capacity to do work
Term
Work
Definition
Energy transferred to an object, usually causing the object to move
Term
Chemical Energy
Definition
A form of potential energy that is stored in molecules and may be released during chemicals reactions
Term
Potential Energy
Definition
"Stored" energy, normally chemical energy or energy of position within a gravitational field
Term
Kinetic Energy
Definition
The energy of movement
Term
Laws of thermodynamics
Definition
The physical laws that define the basic properties and behavior of energy
Term
Closed System
Definition
A hypothetical space where neither energy nor matter can enter or leave
Term
Law of Conservation of Energy
Definition
 The principle of physics that states that within any closed system, energy can be neither created nor destroyed, but can be converted from one form to another, also called the first law of thermodynamics
Term
Second Law of Thermodynamics
Definition
The principle of physics that states that any change in a closed system causes the quantity of concentrated, useful energy to decrease and the amount of randomness and disorder (entropy) to increase
Term
Entropy
Definition
A measure of the amount of randomness and disorder in a system
Term
Chemical Reaction
Definition
The process that forms and breaks chemical bonds that hold atoms together in molecules
Term
Reactants
Definition
an atom or molecule that is used up in a chemical reaction to form a product
Term
PRODUCTS
Definition
an atom or molecule that is formed from reactants in a chemical reaction
Term
Exergonic
Definition
Pertaining to a chemical reaction that releases energy
Term
Endergonic
Definition
Pertaining to a chemical reaction that requires an input of energy to proceed
Term
Activation Energy
Definition
In a chemical reaction, the energy needed to force the electron shells of reactants together, prior to the formation of products
Term
Energy-carrier Molecules
Definition
High-energy, unstable molecules that are synthesized at the site of an exergonic reaction, capturing some of the released energy
Term
Electron Carriers
Definition
A molecule that can reversibly gain or lose electrons. _______ generally accept high-energy electrons produced during an exergonic reaction and donate the electrons to acceptor molecules that use the energy to drive endergonic reactions
Term
Coupled Reactions
Definition
A pair of reactions, one exergonic and one endergonic, that are linked together such that the energy produced by the exergonic reaction provides the energy needed to drive the endergonic reaction
Term
Enzymes
Definition
Highly specific biological catalysts
Term
Coenzyme
Definition
 An organic molecule that is bound to certain enzymes and is required for the enzymes' proper functioning; typically, a nucleotide bound to a water-soluble vitamin
Term
Active Site
Definition
the region of an enzyme molecule that binds substrates and performs the catalyic function of the enzyme
Term
Substrate
Definition
the atoms or molecules that are reactants for an enzyme-catalyzed chemical reaction
Term
Metabolism
Definition
 The sum of all chemical reactions that occur within a single cell or within all the cells of a multicellular organism
Term
Metabolic Pathways
Definition
a sequence of chemical reactions within a cell, in which the products of one reaction are the reactants for the next reaction
Term
Competitive Inhibition
Definition
The process by which two or more molecules that are somewhat similar in structure compete for the active site of an enzyme
Term
Noncompetitive Inhibition
Definition
The process by which an inhibitory molecule binds to a site on an enzyme that is distinct from the active site. As a result, the enzyme's active site is distorted, making it less able to catalyze the reaction involving its normal substrate
Term
Allosteric Regulation
Definition
The process by which enzyme action is enhanced or inhibited by small organic molecules that act as regulators by binding to the enzyme at a regulatory site distinct from the active site, and altering the shape and/or function of the active site
Term
Feedback Inihibiton
Definition
In enzyme-mediated chemical reactions, the condition in which the product of a reaction inhibits one or more of the enzymes involved in synthesizing the product
Term
Denatured
Definition
having the secondary and/or tertiary structure of a protein disrupted, while leaving the amino acid sequence unchanged. _______ proteins can no longer perform their biological functions
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