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Evolution
BIOL*2400 Fall 2015
229
Biology
Undergraduate 2
09/15/2015

Additional Biology Flashcards

 


 

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Term
biological evolution
Definition
any change in the inherited traits of a population that occurs from one generation to the next
Term
lineage
Definition
a chain of ancestors and their descendents
Term
natural selection
Definition
a mechanism that can lead to evolution, whereby differential survival or reproduction of individuals causes some genetic types to outcompete others
Term
convergent evolution
Definition
the independent origin of similar traits in separate lineages
Term
homologous
Definition
characteristics are similar in two or more species because they are inherited from a common ancester
Term
synapomorphy
Definition
a derived form of a trait that is shared by a group of related species.
Term
polygeny
Definition
a visual representation of the evolutionary history or a population, genes, or species
Term
genetic drift
Definition
evolution arising from random changes in the genetic composition of a population from one generation to the next
Term
phenotypes
Definition
measurable aspects of organisms, such as morphology, physiology, and behaviour. Genes interact with the environment during the development of the phenotype.
Term
uniformitarianism
Definition
the idea that the natural laws observable around us now are also responsible for events in the past. One part of this view, for example, was the idea that the Earth had been shaped by the cumulative action of gradual processes like sediment deposition and erosion

Earth's landscapes had been created not by gigantic catastrophes but by a series of many small changes
Term
analogous
Definition
traits are similar because they have converged on a shared form. They have not derived from a common ancestor
Term
adaptation
Definition
inherited aspects of an individual that allow it to outcomepete other member of a population that lack the trait (or that have a slightly different version of the trait). Adaptation are traits that have evolved through the mechanism of natural selection
Term
sexual selection
Definition
arises when individuals of one sex (usually males) compete with each other over access to individuals of the other sex. It can lead to the evolution of traits like showy ornaments or weapons that improve an individuals chances of mating
Term
How old is the Earth? How do we know?
Definition
4.568 billion years

19th century scientist debated the age of the Earth.
Studies of radioactive isotopes give us the currently accepted age.
Darwin was closer than Kelvin
Term
Lagerstatte
Definition
a site with an abundant supply of unusually well-preserved fossils from the same period of time, often including soft tissues
Term
Burgess Shale
Definition
A Lagerstatten in Canada that preserved fossils from the Cambrain period
Term
How old is the Earth? How do we know?
Definition
4.568 billion years

19th century scientist debated the age of the Earth.
Studies of radioactive isotopes give us the currently accepted age.
Darwin was closer than Kelvin
Term
biomarker
Definition
molecular evidence of life in the fossil record. biomarkers can include fragments of DNA, molecules such as lipids, or isotopic ratios.
Term
stromatolites
Definition
layered strs formed by the mineralization of bacteria
Term
Ediacaran fauna
Definition
a group of animal species that existed btw 575 and 535 MYA. pre-cambrian animals!
Term
chordates
Definition
members of a diverse phylum of animals that includes the vertebrates, lancelets, and tunicates.

Chordates all have a notochord, a hollow nerce cord, pharyngeal gill slits, and post-anal tail as embryos.

dating back 515 MYA
Term
trilobites
Definition
extinct marine arthropods that diversifies during the Cambrian period and gradually died out during the Devonian period. endured until 251 MYA
Term
notochord
Definition
a flexible, rod-shaped str found in the embryos of all chordates. The first "backbones; in early chordates and in extant vertebrates the embryonic notochords becomes part of the vertebral column
Term
prokaryotes
Definition
microorganisms lacking a cell nucleus or any other membrane bound organelles. Comprise two evolutionarily distinct groups: Bacteria and Archea.

earliest hints of terrestrial life
Term
tetrapods
Definition
vertebrates with four limbs (or descended from vertebrates with four limbs). Living tetrapods include mammals, birds, herps.
about 370 MYA
Term
teleosts
Definition
a lineage of bony fish that comprises most living species of vertebrates.
Include goldfish, tuna, salmon.
Can be distinguished from other fish by unique traits such as the mobility of an uper jawbone called the premaxillary.
Term
synapsids
Definition
a lineage of tetrapods that emerged 300 MYA and have rise to mammals.
Can be distinguished from other tetrapods by the presence of a pair of openings in the skull behind the eyes, known as the temporal fenestrae
Term
hominin
Definition
humans and all species more closely related to humans than to chimps`
Term
Tiktaalik
Definition
Missing link btw fish and tetrapods. Flat skull, neck, can bend front appendages. Pelvis and spine NOT attached.

375 MYA
Term
branches
Definition
lineages evolving through time that connect successive speciation or other branching events
Term
nodes
Definition
points in a phylogeny where a lineage splits
Term
tips
Definition
terminal ends of an evolutionary tree, representing species, molecules, or populations between compared
Term
internal nodes
Definition
nodes that occur within a phylogeny and represent ancestral population or species
Term
clades
Definition
single "branches" in the tree of life; each clade represents an organism and all of its descendents
Term
monophyletic
Definition
describes a group of organisms that form a clade. taxonomic unit must be monophyletic to be considered legitimate.
Term
polyphyletic
Definition
describes taxon that does not include the common ancestor of all members of the tzxon
Term
paraphyletic
Definition
describes a group of organisms that share a common ancestor although the group does not include all descendants of that common ancestor
Term
characters
Definition
heritable aspects of organisms that can be compared across taxa
Term
taxa (taxon)
Definition
groups of organisms that a toxonomist judges to be cohesive taxonomic units, such as a species or order
Term
synamorphy
Definition
derived form of a trait that is shared by a group of related species -> evolved in the immediate common ancestor in a clade and inherited by all the descendants

shared derived traits/characters
Term
outgroups
Definition
groups of organisms that are outside of the monophyletic group being considered. Can be used to infer the ancestral states of characters
Term
homoplasy
Definition
describes a character state similarity NOT due to shared descent (e.g. produced by convergent evolution or evolutionary reversal)
Term
convergent evolution
Definition
independent origin of similar traits in separate evolutionary lineages
Term
evolutionary reversal
Definition
describes the reversion of a derived character state to a form resembling its ancestral state
Term
parsimony
Definition
a principle that guides the selection of alternative hypotheses; the alternative requiring the fewest assumption or steps is usually best.

In cladistics, scientist search for tree topography with the least number of character-state changes - the most parsimonious.
Term
polytomy
Definition
describes an internal node of a phylogeny with more than two branches
Term
coelacanths
Definition
one of the closest living relatives of tetrapods

live in the deep sea off the coast of Africa and the waters around Indonesia
Term
lobe-fins
Definition
Clade containing tetrapods, coelacanths, and lungfishes`
Term
horizontal gene transfer
Definition
the transfer of genetic material-other than from parent to offspring-to another organism, sometimes a distantly related one, without reproduction. Once this material is added to the recipients's genome, it can be inherited by descent
Term
Monotremes
Definition
one living branch of mammals

lay eggs, produce milk thru loose network of glands

platypus
Term
Marsupials
Definition
One branch of living mammals

living young which crawl into pouch on mother's belly
Term
Eutherian mammals
Definition
one branch of living mammals

all mammals that develop a placenta to feed embryos in the uterus

us
Term
exaptation
Definition
a trait that initially carries out one fxn and is later co-opted for a new fxn. The original fxn may or may not be retained
Term
genotype
Definition
genetic makeup of an individual.

Includes all the alleles of all the genes in that individual, the term is often used to refer to the specific alleles carried by an individual for any particular gene
Term
phenotype
Definition
observable, measurable characteristics of an organism. A phenotype may be a morphological str, a developmental process, a physiological process or performance trait, a behaviour, or a molecule produced by a gene
Term
genetic polymorphisms
Definition
the simultaneous occurrence of two or more discrete phenotype within a single population.
Term
polyphenism
Definition
a trait for which multiple, discrete phenotypes can arise from a single genotype, depending on environmental circumstances.
Term
quantitative traits
Definition
measurable phenotypes that vary among individuals over a given range to produce a continuous distribution of phenotypes.

Complex traits

polygenic traits
Term
population genetics
Definition
the study of the distribution of alleles within populations and the mechanisms that can cause allele frequencies to change over time
Term
genetic locus
Definition
the specific location of a gene or piece of DNA sqn on a chromosome. When mutations modify the sqn at a locus, they generate new alleles-variants of a particular gene or DNA region. Alleles are mutually exclusive alternatives states for a genetic locus.
Term
Hardy-Weinberg theorum
Definition
in the absence of drift, selection, migration, and mutation, allele frequencies at a genetic locus will not change from one generation to the next
Term
fixed allele
Definition
an allele that remains in a population when all of the alternative alleles have disappeared. No genetic variation exists at a fixed locus within a population, because all individuals are genetically identical at that locus.
Term
genetic bottleneck
Definition
an event in which the number of individuals in a population is reduced drastically. Even if this dip in number is temporary, it can have a lasting effect of the genetic variation of a population.
Term
the founder effect
Definition
a type of genetic drift

describes the loss of allelic variation that accompanies founding of a new population from a very small number of individuals.

New population can differ significantly from the source population.
Term
inbreeding coefficient (F)
Definition
the probability that the two alleles at any locus in an individual will be identical because of common descent.

F can be estimated for an individual F(pedigree) by measuring the reduction in heterozygosity across loci w/in the genome of that individual attributable to inbreeding.

Can be estimated for a population using the reduction in heterozygosity at one or a few loci sampled for many different individuals w/in the pop.
Term
inbreeding depression
Definition
a reduction in the average fitness of inbred individuals relative to that of outbred individuals. It arises because rare, recessive alleles become expressed in a homozygous state where they can detrimentally affect the performance of individuals.
Term
quantitative genetics
Definition
the study of continuous phenotypic traits and their underlying evolutionary mechanisms
Term
variance
Definition
a statistical measure of the dispersion of trait values about their mean
Term
Broad sense heritaility
H^2
Definition
the proportion of the total phenotypic variance of a trait that is attributable to genetic variance, where genetic variance is represented in its entirety as a single event (not broken down into different components)
Term
quantitative genetics
Definition
the study of continuous phenotypic traits and their underlying evolutionary mechanisms
Term
variance
Definition
a statistical measure of the dispersion of trait values about their mean
Term
Broad sense heritaility
H^2
Definition
the proportion of the total phenotypic variance of a trait that is attributable to genetic variance, where genetic variance is represented in its entirety as a single event (not broken down into different components)
Term
heritability
Definition
the proportion of the total phenotypic variance that is attributable to genetic variation among individuals
Term
epistatis
Definition
the effects of an allele at one genetic locus are modified by alleles at one or more other loci
Term
narrow sense heritability
h^2
Definition
the proportion of the total phynotypic variance of a trait attributed to the additive effects of alleles. This is the component of variance that causes offspring to resemble their parents, and it causes pops to evolve predictably in response to selection.

*does not include dominance or epistasis (when meiosis is present)
Term
selection differential
S
Definition
a measure of the strength of phenotypic selection.

The selection of differential describes the difference between the mean of the reproducing members of the population who contribute offspring to the next generation and the mean of all members of the population.
Term
disruptive selection
Definition
Individuals with a trait value close to the mean might fare less well than individuals at the ends of the distribution.


change from normal distribution to two isolated peaks.
Term
stabilizing selection
Definition
Selection favours traits with values at the middle of the distribution

Tends to keep the population moving away from a narrow range of values for the trait
Term
directional selection
Definition
Selection favors trait values on one end of the distribution, the population may evolved in that direction
Term
breeder's eqn
Definition
R = h^2 x S

R= evolutionary response
h^2=narrow sense heritability
S = phenotypic variation that influences fitness
Term
artificial selection
Definition
selection resulting from human activity when breeders non-randomly choose individuals with economically favourable traits to use as breeding stock, the impose strong artificial selection on those traits.
Term
ecological character displacement
Definition
evolution driven by competition between species for a shared resource. Traits evolve in opposing directions, minimizing overlap between the species.
Term
Carl Linnaeus
Definition
1707-1778

the invariability of species is the condition for order

binomial "two names" species name

systema naturae
Term
Jean-Baptiste Lamarck
Definition
1744-1829

"inheritance of acquired traits"

1st law: use/disuse causes strs to enlarge/shrink

2nd law: all such changes were heritable
Term
Charles Darwin
Definition
1809-1882

natural selection -> evolution

origin of species: 1859

1. individuals w.in a species are variable
2. some of the phenotypic variation among individuals is inherited by their offspring
3. in every gen, more offspring are produced than can survive therefore, only some will breed
4. the survival and reproduction of individuals is not random: individuals with the most favourable variation will survive and reproduce the most are thus "naturally selected"
Term
Lyell's principles of geology
Definition
geologic change as the steady accumulation of minute changes over enormously long spans of life
Term
Malthus "essay on the principle of population"
Definition
human populations increase geometrically

food sources increase arithmetically

population outstrips its resources

*provided mechanism for evolution by natural selection
Term
Alfred Russel Wallace
Definition
1823-1913

"...nither did the giraffe acquire its long neck by desirin to reach the foliage of the more lofty shrubs, and constantly stretching its neck for the purpose, but because any varieties which occurred aong its antitypes with a longer neck than usual at once secured a fresh range of pasture over the same ground as their shorter-necked companions, and on the first scarcity of food were thereby enabled to outlive them..."
Term
Thomas Henry Huxley
Definition
1825-1895

"darwin's bulldog"

famous debate against archbishop wilberforce june 1860
"i would rather be the offspring of two apes than be a man and afraid to face the truth"
Term
blending inheritance
Definition
inheritance elements act like pigment in paint
Term
pangenesis
Definition
inheritance elements act like pigment in paint
Term
difficulties with Darwin's theory
Definition
1. never resolved the relationship btw natural selection and "the effects of use and disuse" lamarck

2. could not explain how thhe initial effects of natural selection (for white fur) would be nullified by corssing btw the selected individuals and the rest of the population with black fur
Term
Theodosius Dobzhansky
Definition
genetics and the origin of species 1937

- pop. genetics
- chromosome theory + variation
- mendel + darwin = neodarwinism
- mutations with small phenotypic affects were important
- experiment intrxn btw genetic drift and selection
Term
Ernst Mayr
Definition
"systematics and the origin of species" 1942

natural selection acts on the whole organism, not on single genes. Therefore critical of theorectical population geneticist.

allopatric speciation
Term
G. G. Simpson
Definition
"tempo and mode in evolution" 1944

fossil horses with linear fossil sqn with toe reduction

opposed to Alfred Wegener's theory of continental drift
Term
G. Ledyard Stebbins
Definition
"Variation and Evolution in plants" 1950

hybridization and polyploids can create new species

allopolyploids (from 2 species):new environments

autopolyploids (doubling w.in a species): some genes new fxns
Term
Neodarwinian Synthesis
1936-1947
Definition
Evolution by Natural Selection

1. Populations contain genetic variations that arise by random mutation and recombination

2. populations evolve by changes in gene frquencies brought about by random drift, gene flow, and especially natural selection

3. the most adaptive genetic variants have individually slight phenotypic effects so that phenotypic changes are gradual

4. diversification comes about by speciation, which ordinarily entails the gradual evolution of reproductive isolation among geographically isolated populations

5. speciation processes eventually give rise to changes of such great magnitude as to warrant the designation of higher toxonomic levels (genera, families, and so forth)
Term
biases of the fossil record
Definition
classes w/ hard parts most common

marine anials living in mud more likely to be preserved then animals living on a rock shore or terrestrial animals

fossils:
1) impression
2) perimineralized
3) casts and molds
4) exceptional preservation (rare)
Term
age of the earth
Definition
4.56 billion yo
Term
fossil stromalite
Definition
mats of filamentous cyanbacteria 2bya
Term
earliest eukarya fossils
Definition
~1.8 bya
Term
earliest bacteria fossils
Definition
(potentially 3.45bya)

abundant by ~2.6 bya
- stromalites corresponding to rise in oxygen
Term
earliest archea fossils
Definition
~3.5 bya
Term
key concepts: first bacteria life
Definition
potential biochemical signs of life date to 3.7 bya (controversial)

earliest accepted stromalite fossils of mats of filamentous bacteria (cyanobacteria) date to 3.45 bya

life present on earth only 0.5 bys after our planet's formation!

bacteria still constitute most of the earth's biodiversity
Term
oldest multicellular animal
Definition
small sponge 600 mya from southern china
*controversial
Term
key concepts: first multicellular eukaryotic life
Definition
transition to multicelluar plant life began at least 1.6 bya (green algae)

transition from unicellular to multicellular may have occured multiple times and possibly independently for:
- multicellular eumetazoan animals
- sponges
- green seaweeds
- red seaweeds
- brown seaweeds
- fungi
Term
Ediacaran multicellular animals
Definition
diverse and unique animals dominated the oceans from 575 - 535 mya

hard to place taxonomically

radial symmetry

rangia bilaterally symmetrical instead of radial

only a fraction of Ediacaran animal fauna share traits with existing animal lineages
-almost all extinct w.in 40my
Term
Cambrian explosion!
arthropods
Definition
1. bilateral symmetry
2. segmented bodies
3. hard exoskeletons
4. jointed legs
5. many appendages
Term
Aysheaia
Definition
a marine onychophoran

Walcott thought this species was an annelid worm.

Modern annelid worms exist
Term
hallucigenia
Definition
a marine onychophoran?

priapulid worm
Term
Prof Hary B Whittington F.R.S.
Definition
realized that some burgess shale species do not fit into existing classes of invertebrates

marella - not a trilobite or anything
Term
Predator's trunk
Definition
Opabinia regalis

H: increase in predation pressure mid-Cambrain constrained large morphological changes
Term
Anomalocaris canadensis
Definition
large swimming predator on crustaceans

originally ID'd as four separate body parts then put together by Derek Briggs
Term
laggania
Definition
like anomalocaris canadensis but difference in head shape, arm morphology, and has no fantail
Term
anomalocaris saron
Definition
515 mya

lagerstatten in china

shows the armed anterior appendages and primnet eyes. the central gut and dark paired strs.
Term
Phanerozoic Eon
Definition
3 eras

Paleozoic 541 - 252 mya
(trilobites, esp. early)

Mesozoic 252 mya - 66 mya
(non-avian Dinosaurs)

Cenozoic 66mya-recent
(horses)
*well strudied
Term
trilobite morphology
Definition
20,000 species

0.3 - 70 cm

highest diversity if Cambrian but continued until end of paleozoic

molted thick chitinous exoskeleton

"three lobes": axial and left and right pleural lobes. There were biramous tiny legs under the pleural lobes.

compound eyes (similar to insects)

shed hard exoskeleton to allow growth (likely)

fed mostly on particles although some could crush prey in the bases of their legs

mass extinction at end of Cambrian and end of Ordovician
Term
1st terrestrial vertebrates
Definition
oldest trackways date to 390 mya
oldest fossils of tetrapods date to 370 mya
Term
Evolution of mammals
Definition
evolved from synapsids (dominant 280 mya)

1st mammals 150mya
Term
two pelvis types of Dinosauria
Definition
reptile hipped
e.g. Allosaura
dominant in Triassic

bird-hipped
e.g. Stegosaurus
Dominant in Cretaceous
Term
Horse evolution in the cenozoic
Definition
trends: 4 toes -> 3 toes -> 1 toe. Complex molars from browsing to grazing.
Term
ways to ID species
Definition
biological species concept

morphological species concept

phylogenetic species concept
Term
biological species concept
Definition
groups of interbreeding populations that are reproductively isolated from other groups
Term
morphological species concept
Definition
difference in the mean value of a diagnostic morphological trait btw two groups is greater than the average variation within each group
Term
phylogenetic species concept
Definition
smallest possible group descending from a common ancestor and recognizable by unique, derived (binary) traits
Term
cladogram
Definition
only branching order matters

monophyletic groups = clades/lineages
-> ancestor + ALL of its descendents
Term
Tiktaalik
Definition
transitional fossil btw fish and tetrapods predicted in Devonian sedimentary rock

forelimbs share homologies with tetrapods: has wrist and neck but not five digits
**neck & push-ups
Term
reliable characters
Definition
independent

homologous

maximize variability but minimize homoplasy

available in large numbers
Term
homoplasy
Definition
character state similarity not due to common descent

convergent evolution, evolutionary reversals
Term
parsimony informative sites (PI)
Definition
a base position site that has at least two different bases that are each present in at least two different species (taxa)
Term
parsimony priciple
Definition
the tree with the minimum number of hypothetical evolutionary changes is the preferred tree
Term
distance matrix
(e.g. neighbour joining)
Definition
clusters taxa based on genetic distance
Term
maximum likelihood
Definition
finds most likely tree given specific model of molecular evolution
Term
Bayesian methods
Definition
looks at the probability that a tree is correct given a specific model of molecular evolution
Term
molecular markers
application for ecologists
Definition
1) barcoding to find cryptic (morphologically-similar) species

2)population genetic structure: management units of fisheries or wildlife populations

3) figuring out who is the biological father

4)estimating rates of migration among populations

5) estimating genetic diversity in small or endangered populations
Term
2 populare neutral molecular markers for population ecologists
Definition
1) snigle nucleotide polymorphism (SNP) in nuclear or mitochondiral DNA fragment
(difference in sqn detected among alleles)

2) microsatellites (STRs): single tandem repeats of 10 to 30 copies of a two to four base pair DNA sqn
(differences in size detected among alleles)
Term
pseudogene
Definition
a gene that has lost its ability to produce a useful product and therefore is no longer expressed
Term
advantage to PCR assays
Definition
can genotype very small tissue sample, feather, hair, feces, fin clips, scales, copepods

can use easy crude DNA extraction methods w/ colour coded kit

millions of copies of your target DNA fragment: so can determine swn
Term

effective population size

Ne

Definition

the size of an ideal population that would undergo the same amt of genetic drift as the population under consideration

 

Ne > 50 prevents inbreeding

Ne > 500 prevents loss of alleles from drift

Term
fitness
Definition

the reproductive succes of an individual with a particular phenotype

 

components:

- surviving to reproductive age

- mating success

- fecundity

Term
relative fitness
Definition
fitness of a genotype standardized by comparison to other genotypes
Term
5 forces that drive evolution
Definition

mutation

 

non-random mating

 

gene flow

 

genetic drift

 

natural selection

Term
adaptations
Definition
inherited traits that result in individuals being favoured by natural selection in certain environments
Term
exaptations
Definition

 trait that has been co-opted for a use other than the one for which natural selection has built it.


"borrowed traits"

Term
exaptations
Definition

 trait that has been co-opted for a use other than the one for which natural selection has built it.


"borrowed traits"

Term
plants' colonization of the land was made possible by a symbiotic relationship with:
Definition
fungi
Term
metapopulation
Definition
a group of spatially separated populations of the same species that interact at some level (e.g. exchange alleles)
Term
general lineage species concept
Definition
the idea that species are metapopulations of organisms that exchange alleles frequently enough that they comprise the same gene pool and therefore the same evolutionary lineage
Term
isolating barrier
Definition
on aspect of the environment, genetics, behaviour, physiology, or ecology of a species that reduces or impedes gene flow from individuals of other species.
Term
speciation
Definition
the evolutionary process by which species arise. Speciation caused one evolutionary lineage to split into two or more lineages
Term
allopatry
Definition
occurs when populations are in separate, non-overlapping geographic areas
Term
sympatry
Definition
occurs when populations are in the same geographic area
Term
gametic incompatibility
Definition
occurs when the sperm or pollen from one species fails to penetrate and fertilize the egg or ovule of another species
Term
prezygotic reproductive barriers
Definition
aspects of the genetics, behaviour, physiology, or ecology og a species that prevent sperm from on species from fertilizing eggs of another species.

Reduce the likelihood that a zygote will form
Term
postzygotic reproductive barries
Definition
aspects of the genetics, behaviour, physilogy, or ecolgy of a species that prevent zygotes from successfully developing and reproducing themselves
Term
Bateson-Dobzhansky-Muller incompatibilities
Definition
genetic incompatibilities in hybrid offspring arising from epistatic interactions between two or more loci
Term
reinforcement
Definition
the increase of reproductive isolation between populations through a selection against hybrid offspring
Term
parapatric speciation
Definition
the evolution of a new species within a spatially extended population that still has some gene flow
Term
isolation by distance
Definition
a pattern in which populations that live in close proximity are genetically more similar to each other than populations that live farther apart
Term
ecological speciaton
Definition
evolution of reproductive barriers between populations by adaptation to different environments or ecological niches
Term
allopolyloidy
Definition
polyploidy (more than two paired chromosomes) resulting from interspecific hybridization.
Term
cryptic species
Definition
lineages that historically have been treated as one species because they are morphologically similar but that are later revealed to be genetically distinct
Term
stable ecotype mofel
Definition
Cohan

microbes undergo ecological speciation like animals and plants do

when microbes adapt to a particular ecological niche it's appropriate to them a species
Term
macroevolution
Definition
evolution occurring above the species lvl, including the origination, diversification, and extinction of species over long periods of evolutionary time
Term
microevolution
Definition
evolution occurring within adaptive populations, including adaptive and neutral changes in allele frequencies from one generation to the next
Term
biogeography
Definition
the study of the distribution of species across space (geography) and time
Term
dispersal
Definition
the movement of populations from one geographic region to another with very limited return exchange, or none at all
Term
vicariance
Definition
the formation of geographic barriers to dispersal and gene flow, resulting in the separation of once continuously distributed populations
Term
adaptive radiations
Definition
evolutionary lineages that have undergone exceptionally rapid diversification into a variety of lifestyles or ecological niches
Term
the Ordovician event
Definition
443 mya; 3.3 - 1.9 million y
57% genera, 86% species lost

alternating glacial, interglacial periods

uplift and weathering of Appalachians affecting atmospheric and ocean chem

sequestration of carbon dioxide, lowering avg global T
Term
The Devonian Event
Definition
359 mya; < 60,000 y
35% genera, 75% species lost

global cooling (followed by global cooling)

diversification of land plants -> weathering, soil formation, fall in [carbon]atmospheric

evidence for widespread deep water anoxic waters

some evidence impacts for asteroid/comet?
Term
the Ordovician event
Definition
443 mya; 3.3 - 1.9 million y
57% genera, 86% species lost

alternating glacial, interglacial periods

uplift and weathering of Appalachians affecting atmospheric and ocean chem

sequestration of carbon dioxide, lowering avg global T
Term
The Devonian Event
Definition
359 mya; < 60,000 y
35% genera, 75% species lost

global cooling (followed by global cooling)

diversification of land plants -> weathering, soil formation, fall in [carbon]atmospheric

evidence for widespread deep water anoxic waters

some evidence impacts for asteroid/comet?
Term
The Permian Event
Definition
252 mya; < 60,000y

56% of genera, 96% of species lost

siberian volcanism

global warming

spread of deep marine anoxic waters

elevated hydrogen sulfide and carbon concentration in both marine and terrestrial realms

ocean acidification

impact?
Term
The Triassic Event
Definition
200 mya; 8.3 my - 600,000y

47% genera, 80% species lost

activity in central atlantic magmatic province -> elevated carbon dioxide levels

increased global temperatures

-> lead to calcification crisis in world's oceans
Term
The Cretaceous Event
Definition
65 mya; 2.5 my - < 1 year!

40% of genera, 76% of species lost

impact in the Yucatan
-> global cataclysm
-> rapid cooling

good bye dinosaurs we love you but are also sort of glad we don't have to share the earth with you because we've all seen Jurassic Park
Term
anisogamy
Definition
sexual reproduction involving the fusion of two gametes; individuals producing the larger gamete (egg) are defined as female, and individuals producing the smaller gamete (sperm) are defined as males
Term
fecundity
Definition
the reproductive capacity of an individual, such as the number and quality of eggs and sperm. As a measure of relative fitness, fecundity refers to the number of offspring produced by an organism
Term
certainty of paternity
Definition
the probability that a male is the genetic sire of the offspring his mate produces
Term
operational sex ratio
OSR
Definition
the ratio of male to female individuals who are available for reproducing at any given time
Term
sexual selection
Definition
the differential success resulting from the competition for fertilization
Term
intersexual selection
Definition
occurs when members of the limiting sex (generally females) actively discriminate among suitors of the less limited sex

female choice
Term
intrasexual selection
Definition
the members of the less limiting sex (generally males) compete with each other over reproductive access to the limiting sex

male-male competition
Term
sexual dimorphism
Definition
a difference in form btw males and females of a species, including colour, body size, and the presence or absence of strs used in courtship displays or in contests
Term
opportunity for selection
Definition
refers to the variance in fitness within a population.

no variance -> no selection
*opportunity for selection constrains the intensity of selection that is possible
Term
direct benefits
Definition
benefits that affects a particular female directly, such as food, nest sites, or protection
Term
indirect benefits
Definition
benefits that affect the genetic quality of a particular female's offspring, such as male offspring that are more desirable to females
Term
Leks
Definition
assemblages of rival males who cluster together to perform courtship displays in close proximity
Term
Homo erectus
Definition
early Homo

1.8 mya
Term
Australopithecus sediba
Definition
unique mix of australopithecus and homo traits

a.
small brain size
long, high cheekbones
primitive molar cusps
small body size
long upper limbs
primitive heel bones

h.
front brain reorganized
projecting nose
smaller teeth and chewing muscles
hips less flared, similar to humans
longer legs
hand with precision grip
Term
Archeulean technology
Definition
tools associated with hominins btw 1.6mya and 100,000 ya. these tools are found across Africa, much of W. Asia, and Europe.

Often found in association w. Homo erectus remains.

*display more sophistication in construction than Oldowan tools
Term
Archeulean technology
Definition
tools associated with hominins btw 1.6mya and 100,000 ya. these tools are found across Africa, much of W. Asia, and Europe.

Often found in association w. Homo erectus remains.

*display more sophistication in construction than Oldowan tools
Term
Homo heidelbergensis
Definition
800,000ya

brain ~ 1200 cc
hunting -> cooperation
no art?

evolved into Neanderthals
Term
Lavallois tools
Definition
tools formed by a distinctive method of stone knapping involving the striking of flakes from a prepared cone.

Technique more sophisticated than earlier styles, flakes could be shaped sharp scrapers, knives, and projectile points
Term
Neanderthals
Definition
brain size = us
diet rich in meat
jewelry?
intentionally buried their dead

disappear ~ 40,000 ya
Term
Earliest homo sapien found
Definition
skull cap
Ethiopia
195,000ya
Term
Homo sapien
Definition
accelerating pace of change

tools acquire local flavour and are traded over large distances

self-expression
Term
Denisovans
Definition
another lineage of hominins found in Siberia

share a common ancestor with modern human and neanderthals

people alive today in Southeast Asia and australia have denisovan alleles
Term
Homo florensiensis
Definition
little, only a meter tall

small brain

possible descent/relative homo erectus
Term
additive genetic variance
Va
Definition
generic variance associated with the average effects of substituting one allele for another
Term
environmental variance
Ve
Definition
phenotypic variation caused by the environment
Term
higher Bmp4 expression
Definition
deeper and wider beaks in finches
Term
higher calmodulin expression
Definition
longer beaks in finches
Term
HOX gene
Definition
ancient genetic tool kit in bilateral symmetrical animals

Hix gene order reflect order of body sigement

Hox genes control axes of symmetry and location and types of appendages
Term
Debate: Darwinian Evolution
pros and cons
Definition
pro:
1) homology: common blueprint
2) vestigial structures

con:
1) trait must be there for selection to act -> birds with non-functional wings
2) we have not recently seen new phyla of animals being created
Term
deep homology
Definition
traits in different lineages arise from the same inherited regulatory networks
Term
Malacostraca
Definition
has two pairs of antenna, 8 thoracic segments with walking leg, and 6 biramous abdominal appendages with swimming appendages
Term
Two predictions of Bateman's original hypothesis
(now recognized as partially incorrect)
Definition
P1: males should compete among themselves for opportunities to mate and be promiscuous

P2: females should choosy and chaste
Term
postcopulation competition
Definition
mate guarding or vagina plugs

sperm removal (spikes on penis)

sperm pro'n (big testes)

faster sperm (big midpiece)

semen toxic to other male's sperm
Term
barcoding mitochondrial gene
COI for likely different species
Definition
>2-3%
Term
barcoding mitochondrial gene
COI for CERTAINLY different species
Definition
>10%
Term
peripatric speciation
Definition
founder effect
Term
parapatric speciation
Definition
connected
Term
sympatric speciation
Definition
same place
Term
allopatric speciation
Definition
different places
Term
Criteria for verifying sympatric speciation in nature
Definition
1. complete or substantial present sympatry of taxa

2. sympatric taxa are true sister taxa in phylogeny

3. (genetically based) reproductive isolation between taxa

4. bioegeography and evolutionary history of taxa must make the existence of allopatry extremely unlikely
Term
order primates: Prosimians
synapmorphies
Definition
five digits with fingernails

ancestral dental pattern (incisors, canines, premolars, molars)

thumb opposable

forward facing binocular colour vision
Term
order primates: Prosimians
synapmorphies
Definition
five digits with fingernails

ancestral dental pattern (incisors, canines, premolars, molars)

thumb opposable

forward facing binocular colour vision
Term
order primates: Prosimians
synapmorphies
Definition
five digits with fingernails

ancestral dental pattern (incisors, canines, premolars, molars)

thumb opposable

forward facing binocular colour vision
Term
New World Monkeys
Definition
typically have prehensile tails and brachiate using trees

nostrils face sideways
Term
New World Monkeys
Definition
typically have prehensile tails and brachiate using trees

nostrils face sideways
Term
New World Monkeys
Definition
typically have prehensile tails and brachiate using trees

nostrils face sideways
Term
Old World Monkeys
Definition
typically arboreal, quandruped

primarily folivore, ruminent-type, four chambered stomach

tails NOT prehensile

nostrils facing forward
Term
Old World Monkeys
Definition
typically arboreal, quandruped

primarily folivore, ruminent-type, four chambered stomach

tails NOT prehensile

nostrils facing forward
Term
Old World Monkeys
Definition
typically arboreal, quandruped

primarily folivore, ruminent-type, four chambered stomach

tails NOT prehensile

nostrils facing forward
Term
Derived characters shared among higher primates (Hominidae)
"synapomorphie"
Definition
bipedal

opposable thumb contacts forefinger pad (OK)

use gestures; ability to learn sign language

helpless infants stay with mother for several years: cultural transmission of tool use

late sexual maturity (teenage phase)

use tools

chimps hunt game and meat

complex but variable social and mating systems
Term
oldest DNA of quality
Definition
0.7 my horse, Yukon
Term
Derived characters unique to humans
Definition
thick thumb with three extra muscles

ability to construct and use sophisticated tools

spoken language

larynx has descended in throat (more chocking)

reduced masticatory muscle volume (mutation)

females wide hips and vagina; large infant heads

females menstruate, have continuous estrus but concealed ovulation. Move slowly when pregnant

art and musical instruments

religion and burial of dead

controlled use of fire for cooking; less chewing
Term
Hominid migration out of Africa
Definition
H. erectus 1.8 Ma
H. heidelbergensis 0.8 Ma
H. sapiens 60 Ka
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