Shared Flashcard Set

Details

Enzymes (1st half)
8.11.2010
30
Biology
Professional
08/21/2010

Additional Biology Flashcards

 


 

Cards

Term
Oxidoreductases
Definition

Group 1

RedOx rxns (involves transfer of e-, H+, H-)

usually use coenzymes like NAD+, NADP+, FAD, coenzyme Q, or O2

Term
Transferases
Definition

Group 2

Transfer chemical group from donor to acceptor

Term
Hydrolases
Definition

Group 3

Hydrolytic cleavage of covalent bonds

Term
Lyases
Definition

Group 4

Non-hydrolytic cleavage of covalent bonds

Term
Isomerases
Definition

Group 5

Molecular rearrangement w/i a molecule w/o change in formula

Term
Ligases
Definition

Group 6

Formation of covalent bonds between carbon and other atoms

Term
What are the non-protein components of enzymes?
Definition
  • prosthetic groups
  • coenzymes
  • cofactors
Term
Prosthetic groups
Definition
groups tightly bound to enzyme that cannot be separated without loss of fxn
Term
Apoenzyme vs. Holoenzyme
Definition
  • Apoenzyme is an enzyme that is missing its prosthetic group
  • Holoenzyme is enzyme with prosthetic group
Term
Metalloenzyme
Definition
Enzyme with metal ion as prosthetic group
Term
Coenzymes
Definition
  • loosely bound, may or may not separate
  • help with transfer of fxnl group from one compound to another
Term
Cofactor
Definition
  • cofactor is not attached to enzyme, but is necessary for maximal activity (enzyme can still fxn w/o it)
  • not necessarily specific to just one enzyme or substrate
Term
metal-activated enzyme
Definition
enzyme with a metal ion as a cofactor
Term
How does an enzyme affect the concentrations of product and substrate at equilibrium?
Definition
It doesn't... the enzyme just makes the rxn reach equilibrium much faster
Term
What is the effect of an enzyme on ΔG for a rxn? ΔG*?
Definition

No effect on ΔG - still same free energy difference b/w substrate and product

Decreases the activation energy ΔG* between substrate and transition state

Term
Active Site Features
Definition
  • small portion of total enzyme
  • 3-D: active site AA's brought together by the structure, are not sequential in primary structure
  • substrates are weakly bound to A.S. in geometry resembling the transition state and the enzyme provides groups that enhance probability of the transition state occuring
Term
Theory of Induced Fit
Definition

enzyme has binding or recognition sites which the substrate binds to, causing conformational change to fit the substrate

("hand in glove" theory)

Term
What are the four factors that affect enzyme reactions?
Definition

pH

Temperature

[Enzyme]

[Substrate]

Term
Why does optimum pH differ for various enzymes?
Definition
  • pH can affect ionization of A.S. or substrate
  • pH can denature enzyme and disrupt structure
Term
How does temperature affect enzymatic activity?
Definition
  • ↑Temp → ↑ substrate KE and contact w A.S.
  • If Temp ↑↑ denaturation can occur

 

Term
How does enzyme concentration affect enzyme activity?
Definition
Rate of rxn directly proportional to [Enzyme] provided that [substrate] is sufficient to saturate all the enzyme
Term
How does substrate concentration affect enzymatic activity?
Definition

rate of rxn ↑ as [substrate] ↑ until Vmax

at Vmax all available A.S. are saturated

(Michaelis-Menten kinetics - hyperbolic curve)

Term

Michaelis constant

Michaelis-Menten EQ

Definition

Km = [S] at 1/2Vmax = (k2+k3)/k1

but k2>>>k3 so km = k2/k1

 

V =((Vmax*[S])/(Km + [S]))

Term
What are the 3 Assumptions of Michaelis-Menten Model?
Definition

1. [E]<<[S]

2. Rxn occurs at steady state, [ES] constant

3. V measured immediately so that back rxn from P to ES can be ignored

 

E + S ↔ ES → P + E

Term
Functionally what does Km mean?
Definition

Km= affinity of enzyme for its substrate=K2/K1

if Km, Affinity ↓

if Km↓, Affinity ↑

Term
What is kcat?
Definition

kcat = Vmax/[Et]

turnover rate in molecules of substrate converted to product per enzyme molecule per second

Term
How does [enzyme] affect Km?
Definition
Km not affected by varying enzyme concentrations since it reflects the enzyme's affinity for that particular substrate
Term
How are V and [E] related?
Definition

Directly proportional.

If [E] decreases by half, V decreases by half

Term
Lineweaver-Burk plot
Definition

y = mx + b

1/V = (Km/Vmax) (1/S) + 1/Vmax

 

Supporting users have an ad free experience!