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Chem review
for Pharm
39
Chemistry
Undergraduate 4
09/11/2008

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Term
alkane
Definition
one or more carbons w/ hydrogen attachments singly bonded in a straight or branched chain. less than 5 C is gas. methane, ethane, propane, butane, pentane, hexane. CnH2n+2
Term
alkyl
Definition
An alkyl group is a functional group or side-chain that consists solely of singly-bonded carbon and hydrogen atoms, for example a methyl or ethyl group. CnH2n+1
Term
Structural isomer
Definition
molecules with the same molecular formula have atoms bonded together in different orders, as opposed to stereoisomerism. (isoflurane & enflurane)
Term
alkene
Definition
an unsaturated chemical compound containing at least one carbon-to-carbon double bond. unsaturated compounds make them reactive. CnH2n.
Term
alkyne
Definition
hydrocarbons that have at least one triple bond between two carbon atoms. alkynes are unstable and reactive. triple bond is 180 degrees, no cis and trans. CnH2n-2
Term
alcohol
Definition
any organic compound in which a hydroxyl group (-OH) is bound to a carbon atom of an alkyl (replaces H) or substituted alkyl group. COH.
Term
primary alcohol
Definition
an alcohol which has the hydroxyl radical connected to a primary carbon. It can also be defined as a molecule containing a “–CH2OH” group. (ethanol and butanol).
Term
secondary alcohol
Definition
the alcohol carbon is attached to two other carbons
Term
tertiary alcohol
Definition
the alcohol carbon is attached to three other carbons.
Term
aldehyde
Definition
contains a terminal carbonyl group, O=CH. oxidizing a primary alcohol removes 2 hydrogens from the terminal C , forming aldehyde & H2O
Term
hydroxyl
Definition
an oxygen atom and a hydrogen atom connected by a covalent bond. -OH
Term
carbonyl group
Definition
carbon atom double-bonded to an oxygen atom : C=O.
Term
ketone
Definition
chemical compound that contains a carbonyl(O=C) linked to two other carbons. R1(CO)R2. Formed from secondary alcohol.
Term
carboxylic acid
Definition
carboxyl group -COOH and hydroxyl group -OH on a hydrocarbon.
Term
ester
Definition
formed by combining an alcohol & an acid (remove OH from acid O=COH and a hydrogen from alcohol hydroxy group. R-C(=O)-O-R (esmolol, some locals)
Term
ether
Definition
two radical groups joined by an atom of O. R–O–R'
Term
volatile anesthetics
Definition
halogenated ethers (chloride, fluoride, bromide)
Term
amine
Definition
basic nitrogen atom with a lone pair. Amines are derivatives of ammonia (NH3), w/ one or more hydrogen atoms are replaced by organic substituents R groups. primary (1 R), secondary (2R), tertiary (3R), quaternary (4). quaternary bases form part of muscle relaxants, cholinergics, epinephrine
Term
amide
Definition
a carbonyl group (C=O) linked to a nitrogen atom (N), or a compound that contains this functional group. a derivative of a carboxylic acid in which the hydroxyl group has been replaced by an amine or NH3. lidocaine
Term
amino acid
Definition
contains an amino group (-NH2) and a carboxylic acid group (COOH)
Term
Nitrogen compounds
Definition
Nitroso groups or nitrites; heterocyclic ring structures containing N; form basis for pyridines, purines (adenine & guanine, xanthines, caffeine), pyrroles, alkaloids(pyridines are subset of alkaloids, atropine & scopalamine, codeine, morphine, dopamine)
Term
Sulfur compounds
Definition
Formed by replacing O w/ S
Term
Geometric isomers
Definition
cis & trans stereoisomerism describing the orientation of functional groups within a molecule. In general, such isomers contain double bonds, which cannot rotate, but they can also arise from ring structures, wherein the rotation of bonds is greatly restricted.
Term
stereoisomers
Definition
Identical structural (& molecular) formula but different spatial arrangement (optical isomers) (enantiomers, chiral)
Term
CHO
Definition
3-7 carbon straight chain w/ carbonyl & hydroxyl groups; monosaccharides, di, oligo & poly; fxn: fuel source, bldg blocks for lipids, AA, glycolipids, glycoproteins
Term
Lipids
Definition
straight carbon chains w/ methyl & carboxyl groups; fuel, precursor of bile salts; eicosanoids, prostaglandins, thromboxanes, leukotrienes from arachadonic acid (fatty acid): inflammatory cascades
Term
Proteins
Definition
AA joined by peptide bonds; form chains to make 3D structures; enzymes, hormones, receptors, ABs, contractile elements (ex insulin)
Term
Nucleotides
Definition
Nitrogenous base, sugar & phosphate; transfer energy as ATP;
Term
Nucleosides
Definition
composed of nitrogenous base & sugar. purines (adenine & guanine) & pyramadines (thymine & cytosine) (DNA & RNA)
Term
Base pairing
Definition

complementary, w/ purine bound to pyrimidine DNA: Adenine(purine) to Thymine (pyrim), and guanine(purine) to cytosine (pyrim) & deoxyribose sugar

RNA: Thymine replaced w/ Uracil & ribose sugar

Term
Enzymes
Definition
Proteins act as catalyst to increase rate or chem rxn; specific; use of non-protein co-factors to increase activity & facilitate e- transfers
Term
enzyme regulation
Definition
increase/decrease substrate or product; induction or inhibition; modulator proteins regulate activity w/ conformational changes (GABA); neg feedback loops; isoenzymes w/ different roles of same enzyme in different tissue (CP445)
Term
Michaelis-Menton kinetics
Definition

rate of reaction is proportionate to concentration of enzyme -substrate complex; enzyme-catalysed reactions are saturable so their rate of catalysis does not show a linear response to increasing substrate. If the initial rate of the reaction is measured over a range of substrate concentrations (denoted as [S]), the reaction rate (v) increases as [S] increases. However, as [S] gets higher, the enzyme becomes saturated with substrate and the rate reaches Vmax, the enzyme's maximum rate.

 

Term
cellular respiration
Definition
aerobic production of oxidation of CO2, producing ATP generation
Term
ADP-ATP cycle
Definition
energy transformation & re-generation of ATP
Term
oxidative phosphorylation
Definition
glycolysis, fatty acid oxidation, ketone body oxidation, citric acid cycle: energy is converted to high energy phosphate bonds. a metabolic pathway that uses energy released by the oxidation of nutrients to produce adenosine triphosphate (ATP).
Term
TCA
Definition
acetyl-CoA is the thioester between coenzyme A (a thiol) and acetic acid (an acyl group carrier). Acetyl-CoA conveys the carbon atoms within the acetyl group to the citric acid cycle to be oxidized for energy production; provides electrons to transport chain.
Term
Embden-Meyerhof
Definition
lactic acid cycle (anaerobic energy production)
Term
carboxyl group
Definition
one carbon atom attached to an oxygen atom by a double bond and to a hydroxyl group by a single bond. COOH
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