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Chapter 7
Vocabulary & Key Concepts
61
Biology
Undergraduate 1
10/16/2013

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Term
4 things that all cells have
Definition
1. nucleic acids that store & transmit information
2. proteins that perform most of the cell's functions
3. carbohydrates that provide chemical energy, carbon, support, & identity
4. a plasma membrane which serves as a selectively permeable membrane barrier
Term
morphology
Definition
form science
Term
phylogeny
Definition
evolutionary history
Term
3 broad domains of organisms
Definition
1. bacteria
2. archaea
3. eukarya
Term
the most prominent structure inside a bacterial cell is the _____
Definition
chromosome
Term
genes
Definition
segments of DNA that contain information for building functional RNAs, some of which may be used to mae polypeptides
Term
nucleoid
Definition
the location & structural organization of the circular chromosome in bacteria
Term
plasmids
Definition
small, usually circular, supercoiled DNA molecules in bacteria
Term
_____ are observed in all prokaryotic cells & are found throughout the cell interior
Definition
ribosomes
Term
organelle
Definition
a membrane-bound compartment inside the cell that contains enzymes or structures specialized for a particular function
Term
4 tasks of bacterial organelles
Definition
1. storing calcium ions or other key molecules
2. holding crystals of the mineral magnetite which function like a compass needle to help cells sense a magnetic field & swim in a directed way
3. organizing enzymes responsible for synthesizing complex carbon compounds from carbon dioxide
4. sequestering enzymes that generate chemical energy from ammonium ions
Term
cytoskeleton
Definition
cell skeleton
Term
cytoplasm
Definition
inside the membrane, all contents of the cell excluding the nucleus
Term
cell wall (bacteria & archaea)
Definition
tough, fibrous layer that surrounds the plasma membrane
Term
glycolipids
Definition
lipids that contain carbohydrate groups
Term
fimbriae
Definition
needlelike projections that extend from the plasma membrane of some bacteria & promote attachment to other cells or surfaces
Term
bacteria/archaea VS eukaryotes: location of DNA
Definition
b/a: in nucleoid (not membrane bound); plasmids also common
e: inside nucleus (membrane bound); plasmids extremely rare
Term
bacteria/archaea VS eukaryotes: internal membranes & organelles
Definition
b/a: extensive internal membranes only in photosynthetic species; limited types & numbers of organelles
e: large numbers of organelles; many types of organelles
Term
bacteria/archaea VS eukaryotes: cytoskeleton
Definition
b/a: limited in extent, relative to eukaryotes
e: extensive - usually found throughout volume of cell
Term
bacteria/archaea VS eukaryotes: overall size
Definition
b/a: usually small relative to eukaryotes
e: most are larger than prokaryotes
Term
cytosol
Definition
the fluid portion between the plasma membrane & organelles
Term
2 key advantages of compartmentalization (organelles)
Definition
1. incompatible chemical reactions can be separated
2. chemical reactions become more efficient
Term
nuclear envelope
Definition
a complex double membrane that encloses the nucleus
Term
nuclear lamina
Definition
fibrous proteins that form a lattice-like sheet that is linked t the inside of the nuclear envelope
Term
nucleolus
Definition
where RNA molecules found in ribosomes are manufactured & the large & small ribosomal subunits are assembled
Term
endoplasmic reticulum
Definition
an extensive membrane-enclosed factory formed from portions of the nuclear envelop that extend into the cytoplasm
Term
lumen
Definition
the interior of any sac-like structure in a cell or body
Term
smooth endoplasmic reticulum (SER) (smooth ER)
Definition
contains enzymes that catalyze reactions involving lipids
Term
Golgi apparatus
Definition
consists of discrete flattened, membranous sacs called cisternae which are stacked on top of one another
Term
lysosomes
Definition
recycling centers
Term
endomembrane system
Definition
the lysosomes, Golgi apparatus, & endoplasmic reticulum
Term
vacuole function in seeds
Definition
filled with proteins to provide amino acids for the growing individual
Term
vacuole function in cells that make up flower petals or fruits
Definition
filled with colorful pigments
Term
vacuole function in leaves/stems
Definition
packed with noxious compounds that protect them from being eaten by predators
Term
peroxisomes
Definition
a single membrane organelle that originates as a bud from the ER; center for redox reactions
Term
glyoxysomes
Definition
specialized peroxisomes in plants that are packed with enzymes that oxidize fats to form a compound that can be used to store energy for the cell
Term
mitochondria
Definition
produces the cell's ATP
Term
cristae
Definition
sac-like structure connected to the inner membrane of the mitochondria
Term
mitochondrial matrix
Definition
the solution enclosed within the inner membrane of the mitochondria
Term
nucleus: membrane, components, function
Definition
m: double ("envelope"); openings called nuclear pores
c: chromosomes; nucleolus; nuclear lamina
f: information storage & transmission; ribosome subunit assembly; structural support
Term
ribosomes: membrane, components, function
Definition
m: none
c: complex of RNA & proteins
f: protein synthesis
Term
rough ER: membrane, components, function
Definition
m: single; contains receptors for entry of selected proteins
c: network of branching sacs; ribosomes associated
f: protein synthesis & processing
Term
smooth ER: membrane, components, function
Definition
m: single; contains enzymes for synthesizing phospholipids
c: network of branching sacs; enzymes for synthesizing or breaking down lipids
f: lipid synthesis & processing
Term
Golgi apparatus: membrane, components, function
Definition
m: single; contains receptors for products of rough ER
c: stack of flattened, distinct cisternae
f: protein, lipid, & carbohydrate processing
Term
lysosomes: membrane, components, function
Definition
m: single; contains proton pumps
c: acid hydrolases (catalyze hydrolysis reactions)
f: digestion & recycling
Term
vacuoles: membrane, components, function
Definition
m: single; contains transporters for selected molecules
c: varies - pigments, oils, carbohydrates, water, or toxins
f: varies - coloration, storage of oils, carbohydrates, water, or toxins
Term
peroxisomes: membrane, components, function
Definition
m: single; contains transporters for selected macromolecules
c: enzymes that catalyze oxidation reactions; catalase (processes peroxide)
f: oxidation of fatty acids, ethanol, or other compounds
Term
mitochondria: membrane, components, function
Definition
m: double; inner contains enzymes for ATP production
c: enzymes that harvest energy from molecules to make ATP
f: ATP production
Term
chloroplasts: membrane, components, function
Definition
m: double; plus membrane-bound sacs in interior
c: pigments; enzymes that use light energy to make sugars
f: production of sugars via photosynthesis
Term
cytoskeleton: membrane, components, function
Definition
m: none
c: actin filaments; intermediate filaments; microtubules
f: structural support; movement of materials; in some species, movement of whole cell
Term
plasma membrane: membrane, components, function
Definition
m: single; contains transport & receptor proteins
c: phospholipid bilayer with transport & receptor proteins
f: selective permeability - maintains intracellular environment
Term
cell wall: membrane, components, function
Definition
m: none
c: carbohydrate fibers running through carbohydrate or protein matrix
f: protection, structural support
Term
5 steps of the secretory pathway
Definition
1. protein enters ER while being synthesized by ribosome & is processed; one or more carbohydrate groups are often added
2. protein exits ER inside a vesicle, travels to cis face of Golgi apparatus
3. protein enters Golgi apparatus & is processed as the cisterna matures
4. protein exits Golgi apparatus in a vesicle & moves to plasma membrane once its cisterna has matured & moved to the trans face
5. protein is secreted from cell
Term
5 steps of the signal hypothesis
Definition
1. signal sequence is synthesized by ribosome
2. signal sequence binds to signal recognition particle (SRP) & halts synthesis
3. SRP binds to receptor in ER membrane
4. SRP is released; protein synthesis continues; protein enters ER
5. signal sequence is removed; protein synthesis then proceeds to completion
Term
5 steps of protein sorting & vesicle transport
Definition
1. in the endomembrane system, proteins bound for different destinations carry distinct tags that serve as molecular zip codes
2. proteins are sorted in the Golgi when they bind to different receptors
3. transport vesicles bud off the trans face of the Golgi & travel to their destinations
4. proteins on vesicle surface interact with receptors at destination
5. vesicle delivers contents
Term
5 steps of receptor-mediated endocytosis
Definition
1. macromolecules outside the cell bind to membrane proteins that act as receptors
2. the plasma membrane folds in & pinches off to form an endocytic vesicle
3. the endocytic vesicle fuses with an early endosome, activating protons that lower its pH; cargo is released & empty receptors are recycled to the surface
4. the early endosome matures into a late endosome that receives digestive enzymes from the Golgi apparatus
5. the late endosome matures into a functional lysosome & digests the endocytosed macromolecules
Term
3 steps of autophagy
Definition
1. a damaged organelle is enclosed with a membrane
2. the membrane-bound organelle is delivered to a lysosome, which takes it in & begins digesting it
3. small molecules from the digested organelle are released into the cytosol
Term
4 steps of phagocytosis
Definition
1. the plasma membrane detects a smaller cell or food particle & begins to engulf it
2. the resulting membrane-bound vesicle is a phagosome
3. the phagosome is delivered to a lysosome which takes it in & begins digesting it
4. small molecules from the digested food particles are released into the cytosol
Term
actin filaments (microfilaments): structure, subunits, functions
Definition
st: strands in a double helix; -end and +end; 7 nm
su: actin
f: maintain cell shape by resisting tension (pull); move cells via muscle contraction or cell crawling; divide animal cells in two; move organelles & cytoplasm in plants, fungi, & animals
Term
intermediate filaments: structure, subunits, functions
Definition
st: fibers wound into thicker cables; 10 nm
su: keratins, lamins, or others
f: maintain cell shape by resisting tension (pull); anchor nucleus & some other organelles
Term
microtubules: structure, subunits, functions
Definition
st: hollow tube; -end and +end; 25 nm
su: alpha & beta-tubulin dimers
f: maintain cell shape by resisting compression (push); move cells via flagella or cilia; move chromosomes during cell division; assist formation of cell plate during plant cell division; move organelles; provide tracks for intracellular transport
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