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Chapter 15
DNA
50
Biology
Undergraduate 1
12/09/2009

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Term
Beadle and Tatum Experiment
Definition

1.Showed us that genes specified enzymes

2. Used Fungus

3. Used x-ray to damage DNA in fungus

4. Mutated gene correlated with enzymes

5. One gene- one enzyme hypothesis

 

 

Term


Central Dogma of Molecular Biology

 

 

Definition
DNA→RNA→Protein
Term
Genetic Code
Definition
genetic code consisted of a series fo blocks of info called codons, which corresponded to amino acid in the encoded protein
Term
Degenerate
Definition
Some amino acids are specified by more than one codon
Term
Start Codon
Definition
AUG, indicates the beginning of mRNA translation
Term
Stop Codon
Definition
UAA, UAG, UGA that indicate the point at which mRNA translation is to be terminated
Term
64 Codons
Definition
The amino acids encoded by all 64 possible codons were determined by nirenberg
Term
Reading Frame
Definition

The series of nucleotides read in sets of 3

Only one reading frame is correct for encoding the correct sequence of amino acids

Term
Template strand
Definition

stand of the DNA double helix used to make RNA

3'→5'

Term
Coding Strand
Definition
Stand of DNA that is complementary to the template strand
Term
RNA polymerase
Definition

the enzyme that synthesizes RNA from the DNA template

 

3' GCCAT 5'

5' CGGTA 3'

5' CGGUA 3'

Term
RNA structure
Definition

U=A

G=C

Single Stranded

Term
Messenger RNA (mRNA)
Definition
Carries info from DNA that encodes proteins
Term
Ribosomal RNA (rRNA)
Definition
is a structural component of the ribosome. It never needs to be made into protein
Term

Transfer (tRNA)

 

Definition
Carries amino acids to the ribosomes for translation
Term
Small Nuclear RNA (snRNA)
Definition
Are involved in processing pre-mRNA
Term
Signal recognition particle RNA (SRP)
Definition
is composed of protein and RNA and involved in directing mRNA to the RER
Term
Micro-RNA (miRNA)
Definition
are very small and their role is not clear yet
Term
Initiation
Definition
RNA polymerase identifies where to begin transcription
Term
Termination
Definition
RNA polymerase stops transcription when it encounters terminators in the DNA sequence
Term
Transcription Bubble
Definition

During elongation, the bubble moves down the DNA template at a rate of 50 nucleotides/sec.

Consists of:RNA polymerase, DNA template, Growing RNA transcript

Term
RNA Hairpin Loop
Definition
G-C region forms a double-stranded stem whith a single-stranded loop called hairpin. The stretch of U's form a less stable RNA-DNA hybrid that falls off the enzyme. mRNA hairpin ccauses RNA polymerase to pause placing it directly over the run of 4 Uracils
Term
Prokaryotes-Transcription & Translation
Definition
Are oftened coupled, occuring at the same time
Term
Promoter
Definition
Composed of: DNA Sequence for the binding of RNA polymerase, The start site (+1) the first base to be transcribed
Term
RNA Polymerase I
Definition
Transcribes rRNA
Term
RNA Polymerase II
Definition
Transcribes mRNA & some snRNA
Term
RNA Polymerase III
Definition
Transcribes tRNA & some other small RNA's
Term
Transcription Factors
Definition
Proteins that act to bind RNA polymerase to the promoter and initaite transcription
Term
5' cap
Definition
5' end of an mRNA consisting of methylated GTP attatched by a 5' to 5' bond. The cap protects this end form degradation and is involved in the initiation of translation
Term
3' poly A tail
Definition
A series fo 1-200 adenine residues added to the 3' end of an mRNA; the tail appears to enhance the stability of the mRNA by protecting it from degradation
Term
Introns Removal
Definition
Portion of mRNA as transcribed from DNA that is removed by enzymes before the mature mRNA is translated into protein
Term
Spliceosome
Definition
Is organelle responsible for removing introns and splicing exons together
Term
snRNP's (small ribonucleoprotein particles)
Definition
within the spiceosome recognize the intron-exon boundaries
Term
Intron vs. Exon
Definition
Introns are non-coded sequences and exons are sequences that will be translated
Term

Translation

Initiation

Definition
mRNA, tRNA, and ribosome come together
Term

Translation

Elongation

Definition
tRNA's bring amino acids to the ribosome for incorporation into the polypeptide
Term

Translation

Termination

Definition
Ribosome encounters a stop codon and releases polypeptide
Term
TRNA'S
Definition
molecules carry amino acids to the ribosome for incorporation into a polypeptide
Term
Anticodon Loop
Definition
Contains 3 nucleotides complementary to mRNA codons
Term
Acceptor Arm
Definition
the 3' end of a tRNA molecule the portion that amino acids become attatched to during the tRNA charing reaction
Term
Wobble Pairing
Definition
allows less stringent pairing between the 3' base of the codon and the 5' base fo the anticodon
Term
Peptidyl Transferase
Definition
is the enzymatic component of the ribosome which forms peptide bonds between amino acids
Term

tRNA binding site

P-SITE

Definition
binds the tRNA attached to the growing peptide chain
Term

tRNA binding site

A-SITE

Definition
binds the tRNA carrying the next amino acid
Term

tRNA binding site

E-SITE

Definition
binds the tRNA that carried the last amino acid
Term

Mutations

Base substitution mutations

Definition
Substitute one base for another
Term

Mutations

Nonsense

Definition
Create stop codon
Term

Mutations

Frameshift mutations

Definition
caused by insertion or deletion of a single base
Term

Chromosomal Mutations

 

Definition
change the structure of a chromosome
Term
Missense Mutations
Definition
A base substitution mutation that results in the alteration of a single amino acid
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