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Chapter 1
Structure & Bonding in Organic Molecules
66
Organic Chemistry
Undergraduate 2
08/25/2014

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Term
functional groups
Definition
groups of atoms that determine organic molecules' chemical reactivity
Term
alkanes
Definition
only carbon & hydrogen atoms (hydrocarbons) connected by single bonds
Term
stereoisomerism
Definition
compounds with the same connectivity but differing in the relative positioning of their component atoms in space
Term
substitution reaction
Definition
one halogen atom may be replaced by another
Ex) CH3-Cl + KI -> CH3-I + KCl
Term
elimination process
Definition
adjacent atoms may be removed from a molecule to generate a double bond
Ex) HCH2-ICH2 + KOH -> H2C=CH2 + HOH + KI
Term
Wohler's Synthesis of Urea
Definition
lead cyanate + water + ammonia -> urea + lead hydroxide
Term
synthesis
Definition
the making of molecules
Term
reactants/substrates
Definition
the starting compounds of a chemical reaction
Term
reaction intermediates
Definition
species formed on the pathway between reactants & products
Term
Coulomb's Law of Electric Charge
Definition
opposite charges attract each other (electrons are attracted to protons) & like charges repel each other (electrons spread out in space)
Term
Coulomb's Law (Mathematical)
Definition
attracting force = constant x [(+ charge x - charge)/distance^2]
Term
bond strength
Definition
the decrease in energy because the attractive force causes energy to be released as the neural atoms are brought together
Term
bond length
Definition
the distance between the two nuclei when the atoms reach a certain closeness where no more energy is released
Term
two extreme types of bonding which explain the interactions between atoms in organic molecules
Definition
1. covalent bond
2. ionic bond
Term
covalent bond
Definition
formed by the sharing of electrons so that each atom attains a noble-gas configuration
Term
ionic bond
Definition
based on the electrostatic attraction of two ions with opposite charges
Term
octets
Definition
eight electrons in the outer shell
Term
valence electrons
Definition
outer-shell electrons
Term
ionization potential/IP
Definition
the energy it takes to remove an electron from an atom
Term
electron affinity/EA
Definition
energy released when an electron attaches itself to an atom
Term
proton
Definition
a hydrogen which has lost its electron
Term
hydride ion
Definition
a hydrogen which has accepted an additional electron
Term
Lewis structures
Definition
drawings which depict electrons as dots around the atomic symbol
Ex) H:C:::C:H
Term
electropositive
Definition
electron donating; electrons are held less tightly by the nucleus than those of elements to the right
Term
electronegative
Definition
electron accepting/electron pulling
Term
polarization
Definition
covalent bonds between atoms of differing electronegativity
Term
dipole
Definition
the separation of opposite charges; symbolized by an arrow crossed at its tail & pointing from positive to negative
Term
electron repulsion is at a minimum in a _____ structure
Definition
linear
Term
lone electron pairs/lone pairs
Definition
pairs of valence electrons not used for bonding
Term
charge separated
Definition
when charges exist on atoms even in neutral molecules
Term
valence-shell expansion
Definition
when elements beyond the second row may be surrounded by more than eight valence electrons
Term
Kekule structures
Definition
covalent single bonds are represented by straight lines, double bonds are represented by two lines, triple bonds are represented by three lines; lone electron pairs can either be shown as dots or simply omitted
Term
resonance forms
Definition
multiple correct Lewis pictures of the same molecule
Term
delocalized
Definition
when a negative charge is evenly spread out over atoms in a molecule; electrons "spread out in space"
Term
resonance hybrid
Definition
the true structure of a molecule is a composite of its resonance forms
Term
4 important points about resonance forms
Definition
1. pushing one electron pair toward one atom & away from another results in a movement of charge
2. the relative positions of the atoms stay unchanged (only electrons are moved)
3. equivalent resonance forms contribute equally to the resonance hybrid
4. the arrows connecting resonance forms are double headed (<->)
Term
major resonance contributor (3 guidelines)
Definition
1. structures with a maximum of octets are most important
2. charges should be preferentially located on atoms with compatible electronegativity
3. structures with less separation of opposite charges are more important resonance contributors than those with charge separation
Term
atomic orbitals
Definition
the regions around a nucleus where electrons can be found
Term
classical atom
Definition
electrons "orbit" around a nucleus
Term
nodes
Definition
points at which the sign changes on matter waves
Term
quantum mechanics
Definition
the theory of electron motion that states that waves that interact in phase reinforce each other (larger wave amplitude) & waves that interact out of phase interfere with each other (smaller wave amplitude)
Term
which Greek letter is used to denote wave functions?
Definition
psi
Term
degenerate
Definition
solutions of equal energy
Ex) 2Px, 2Py, & 2Pz energy orbitals (energetically equivalent)
Term
3 rules for assigning electrons to atomic orbitals
Definition
1. lower-energy orbitals are filled before those with higher energy
2. no orbital may be occupied by more than two electrons
3. degenerate orbitals (such as p orbitals) are first occupied by one electron each, all of these electrons having the same spin
Term
Pauli exclusion principle
Definition
no orbital may be occupied by more than two electrons
Term
spin
Definition
orientation of an electron's intrinsic angular momentum
Term
paired electrons
Definition
electrons of opposing spin occupying the same orbitals
Term
Hund's rule
Definition
degenerate orbitals area first occupied by one electron each, all of these electrons having the same spin; subsequently, electrons of opposite spin are added to the first set
Term
closed-shell configuration
Definition
atoms that have completely filled sets of atomic orbitals
Term
open-shell configuration
Definition
atoms that have incompletely filled sets of atomic orbitals
Term
Aufbau principle
Definition
the process of adding electrons one by one to the orbital sequence
Term
bonding molecular orbital
Definition
an orbital of lower energy resulting from the in-phase overlap of two orbitals
Term
antibonding molecular orbital
Definition
the result of out-of-phase overlap between the same two atomic orbitals; destabilizing
Term
energy splitting
Definition
the amount of energy by which the bonding level drops & the antibonding level is raised
Term
sigma bond
Definition
a bond in which the atomic orbitals are aligned along the internuclear axis
Term
pi bond
Definition
a bond in which the atomic orbitals are perpendicular to the internuclear axis
Term
orbital hybridization
Definition
the mixing of atomic orbitals on the same atom
Term
hybrid orbitals
Definition
formed through the mixing of atomic orbitals on the same atom
Term
isoelectronic
Definition
molecules that have the same number of electrons
Term
elemental analysis
Definition
reveals empirical formula
Term
empirical formula
Definition
summarizes the kinds & ratios of the elements present in a molecule
Term
connectivity
Definition
the sequence of the atoms in a molecule
Term
constitutional/structural isomers
Definition
molecules which have the same molecular formula but differ in the sequence in which the atoms are held together
Term
condensed formula
Definition
single bonds & lone pairs are omitted when drawing molecular structure
Term
bond-line formula
Definition
portrays the carbon frame by zigzag straight lines, omitting all hydrogen atoms
Term
hash-wedged/solid-wedged line notation
Definition
zigzag convention to depict the main carbon chain; each apex (carbon) is connected to two additional lines, one hashed wedged & one solid wedged to represent atoms below/above the plane of the page
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