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Chap 8
Introduction to Metabolism
36
Biology
Undergraduate 2
09/18/2013

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Term
Metabolism
Definition
The total of an organism's chemical reactions
Term
Catabolism
Definition

Break down processes

 

ie: breaking bonds of large molecule to yield smaller ones

 

*energy released

Term
Anabolism
Definition

Synthesize/join smaller molecules

 

*energy required

 

ie: photosynthesis 

Term
Energy
Definition
The capacity to cause change
Term
Kinetic Energy
Definition
energy of motion
Term
Potential energy
Definition

energy that matter possesses due to structure of location

 

ie: potential energy in chemical bonds

Term

Thermodynamics

 

Definition
Study of energy transformation
Term
1st Law of Thermodynamics
Definition

You don't talk about thermodynamics....

 

Energy can neither be created nor destroyed

 

*it can be converted to other forms (heat is difficult and is often lost and not recovered to do work)

Term

2nd Law of Thermodynamics

 

Definition

You don't talk about thermodynamics!

 

As energy conversions occur, entropy is always increasing

 

If system (cell) is ordered, surroundings (universe) is disordered

Term
Entropy
Definition
State of disorder; Chaos
Term
G
Definition
Free energy available to do work in a system.
Term
ΔG
Definition

Change in free energy

 

G Final - G Initial

Term
ΔG is Negative...
Definition

Energy is released

 

ie: Diver

Term
Exergonic Reaction
Definition

A spontaneous reaction, not necessarily fast, but no energy input is required

 

Δ G is Negative 

Term
ΔG is greater than or equal to zero...
Definition

Requires energy

 

ie: joining smaller molecules

Term
Endergonic Reactions
Definition

NOT spontaneous

 

Requires Energy

 

ΔG is greater than or equal to zero

Term
ATP
Definition

Adenosine Triphosphate

 

hydrolysis of ATP can be used to drive cellular work

 

ATP  ---> Pi (unused phosphate) + ADP + Energy

Term
Chemical Work
Definition
Joining Molecules
Term
Transport Work
Definition
ie: active transport carrier proteins
Term
Mechanical Work
Definition
ie: mortor protein movement of vesicle along microtubule
Term
How do endergonic (energy requiring) reactions proceed?
Definition
Coupling Reactions
Term
Coupling Reactions
Definition

Energy from exergonic reactions supplied to endergonic reaction

 

one positive ΔG (endergonic)

one negative ΔG (exergonic)

Term
Conditions for Coupling Reactions
Definition

1.) Both reactions must share a common intermediate

 

i.) A + B ----> C

ii.) C   -----> D + E

(both have C)

 

2.) Net ΔG must still be negative (exergonic must be larger) 

Term
Enzymes
Definition

Proteins that catalyze (speed up) chemical reactions

 

*end with "ase"

ie: sucrase = enzyme for sucrose

 

 

Term
Enzyme Function
Definition

Show specificity for it's reactants (substrate)

 

Speeds up reactions by lowering the energy of activation

Term
Energy of Activation (Ea)
Definition
Energy required for reaction to proceed past transition (intermediate) state
Term
Active Site
Definition

Involved in lowering Ea

  • orients substrates correctly
  • strains substrate bonds
  • creates favorable microenvironment (pH, temp, salt)
  • temporarily bonds to substrate 
  • Not used up (can reuse enzyme)
  • ΔG is unaffected
Term
Factores affecting enzyme activity
Definition
Physical factors (temp, pH, salt)
Term
Cofactors (affecting enzyme activity)
Definition

Non-protein enzyme helpers

 

a.) Inorganic (Mg2+)

 

b.) Organic (coenzymes ie: NAD+ , FADH2)

Term
Competitive Inhibitors
Definition

-mimic substrate (S) & bind to enzyme active site, preventing substrate (S) from binding 

 

-Reversible: increased S concentration can "kick out" inhibitor from active site

Term
Noncompetitive Inhibtor
Definition

-binds allosteric (other) site on enzyme, changing conformation of active site, preventing binding of S to active site

 

-Irreversible: Increase in S does NOT reverse inhibition

Term
Allosteric Regulation
Definition
Binding to enzyme at allosteric (not active site) to active or inhibit
Term
Activator
Definition
Binds allosteric site to stabilize active enzyme form (active site open)
Term
Inhibitor
Definition
Stabilizes inactive form (active site closed)
Term
Cooperativity
Definition

Type of allosteric activation

 

substrate binding to one subunit's active site stabilized the active site of other subunits

Term
Feedback Inhibition
Definition

The end product of a multi-step reaction serves as an allosteric inhibitor to one of the first enzymes in the process

 

*When large amounts of end product accumulate

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