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Ch 8
Microbial Genetics
62
Microbiology
Undergraduate 2
07/17/2010

Additional Microbiology Flashcards

 


 

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Term
genetics
Definition
-study of the variability and transmission of characteristics
-study of genes, how they carry and pass information
Term
genome
Definition
all genetic information in a cell including chromosomes and plasmids
Term
chromosome
Definition
structure containing DNA that physically carry hereditary information
Term
plasmid
Definition
self replicating, gene containing circular piece of DNA
Term
genotype
Definition
genetic constitution of the cell, organism, or individual
Term
phenotpe
Definition
-observable characteristic
-results from expression of genes and environmental factors
Term
bacterial chromosome
Definition
-circular molecule of DNA
-looped and folded
-attached to plasma membrane at one or more points
-about 1 mm long
-supercoiled (10% of cell volume)
Term
expression
Definition
-genetic info is used within a cell to produce proteins needed for the cell to function
Term
recombination
Definition
transfer of genetic information between the same generation of cells
Term
overview of DNA replication (1-5)
Definition
-one parental ds DNA is converted into 2 ds daughter DNA molecules
-one stand acts as a template for the other
-Gyrase/Topoisomerase relaxes supercoiling
-Helicase unwinds the two parental strands like a zipper
-replication fork is the point where replication occurs
Term
overview of DNA replication (6-10)
Definition
-DNA polymerase synthesizes a new DNA strand 5' to 3'
-the leading strand is oriented 5' to 3' in which a polymerase "reads" the DNA and adds nucleotides continuously
-lagging strand is oriented 3' to 5' in which primase "reads" the DNA and adds RNA in short seperated fragements(Okazaki)
-primers are removed
-DNA ligase joins fragments together
Term
DNA replication is ...
Definition
semiconservative
Term
bacterial DNA replication is...
Definition
bidirectional
Term
at completion of bacterial DNA replication, both forks meet and are separated by
Definition
topoisomerase
Term
1 mistake in DNA rep every ____ due to proofreading of_______
Definition
10^10 bases
DNA polymerase
Term
transcription (5)
Definition
-synthesis of a complementary strand of RNA (mRNA) from DNA
-RNA polymerase binds to a promotor on the DNA and initiates transcription
-only one of the two DNA strands acts as a template
-RNA is synthesize 5' to 3'
-transcription stops once RNA polymerase reaches the terminator
Term
translation
Definition
-protein synthsis
-decoding of nucleotides into amino acids
-the sequence of codons (3 nucleotides) on an mRNA molecule determines the sequence of amino acids in the protein
Term
in prokaryotes transcription/translation
Definition
-simultaneous
-translation can begin before transcription is complete
-occur in cytoplasm
-start codon is available to ribsomes
Term
eukaryotes transcription/translation
Definition
-transciption occurs in nucleus and must be completed before it is sent to cytoplasm
-presence of noncoding DNA(introns) between expressed DNA regions (extrons)
-introns removed and extrons spliced together
Term
snRNP
Definition
remove introns and splice extrons
Term
regulation of bacterial gene expression
Definition
-most genes (60-80%) are always turned on /expressed constitutively(enzymes of glycolysis)
-expression of other genes is regulated/only expressed when needed (catabolic enzymes/surface proteins)
Term
repression
Definition
-mechanisms that inhibits gene expression and decrease synthesis of enzymes usually in response to an excess of surplus
Term
repressors
Definition
-regulatory proteins that block the ability of RNA polymerase to initiate transcription
Term
induction
Definition
-mechanisms responsible for turning on the expression of a gene
Term
inducers
Definition
substances that induce the transcription of genes
Term
lac operon
Definition
-genes coding for 3 enzymes involved in lactose uptake and utilization are next to eachother
-LacZ, LacY, LacA (structural genes)
Term
promotor
Definition
region on DNA where RNA polymerase initiates transcription
Term
operator
Definition
-segment of DNA that a repressor or activator binds to
Term
LacI
Definition
regulatory gene that codes for a repressor protein
Term
mutation
Definition
change in the base sequence of DNA
Term
mutation could result in
Definition
-protein misfolded
-enzyme less activated/inactivated
Term
silent mutation
Definition
-occurs when mutated base is on the 3rd position of the mRNA codon
-codes for same amino acid or has same properties (Asp-Glu)
Term
point mutation/base substitution
Definition
- a single base is replaced with another base
-transition-purine for purine or vv
-transversion-purine for pyramidine or vv
Term
missense
Definition
base substitution results in a different amino acid
Term
nonsense
Definition
base substitution results in a STOP codon
Term
frameshift
Definition
-insertion or deletion
Term
mutations can be...
Definition
spontaneous or induced by physical or chemical agents
Term
examples of mutagens
Definition
-nitrous acid
-UV light
-radiation
-nucleoside analogs
Term
mutation rate
Definition
probability that a gene will mutate when a cell divides
Term
spontaneous mutation rate
Definition
10^-9
Term
mutagens increase mutation rate
Definition
10-1000 fold
Term
why bacteria used to study mutation
Definition
-divide rapidly
-only one copy of each gene per cell
Term
positive selection
Definition
-selection that kills unmutated cells
Term
negative selection
Definition
-used to identify mutants that have lost ability to synthesize an amino acid
-these mutant cells cannot grow in the absence of that amino acid (auxotroph)
Term
replica plating technique
Definition
-using a velvet to transfer colonies to histidine and non histadine plates to identify auxotrophs
Term
genetic recombination
Definition
-exchange of genes between 2 DNA molecules
Term
protein that catalyzes the joining of 2 stands or recom DNA
Definition
RecA
Term
mechanisms of Recombination
Definition
-transformation
-conjugation
-transduction
Term
transformation
Definition
-genes transferred from one bacterium to another as naked DNA
-no contact necessary between donor and recipient
-could happen naturally or be induced
Term
mechanism of transformation
Definition
-DNA fragments bind to exterior of cell
-fragmentation of DNA
-one DNA is transferred up to cytoplasm, other is degraded
Term
conjugation
Definition
-transfer a portion of a donor bacterium chromosome to a recipient
-requires direct contact
-as the donor replicates its chromosome, the copy is injected into the recipient
-only can occur between cells of opposite mating types
Term
F+ and F-
Definition
-donor that carries fertility factor (lack Bio- and Met-)
-recipient that does not (lacks Thr- and Leu)
Term
F
Definition
set of genes originally acquired from a plasmid and now integrated into the bacterial chromosome
-established the origin of replication for the chromosome
Term
modes of conjuation
Definition
sex pilli
mating bridge
Term
transduction
Definition
-transfer of bacterial DNA through a virus (bacteriophage)
Term
types of plasmids
Definition
-fertility
-resistance
-col-plasmids
-degradative
-virulence
Term
fertility plasmids
Definition
-capable of conjugation
Term
resistance plasmids
Definition
-contain genes that can build resistance against antibiotics or poisons
Term
col-plasmids
Definition
contain genes that code for bacteriocins (proteinacious toxins)
Term
degradative plasmids
Definition
allow degradation of unusual substance (toluene)
Term
virulence plasmids
Definition
turn bacterium into a pathogen
Term
transposons
Definition
small segments of DNA that can be moved from one region of DNA to another (often within genes)
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