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Cell bio
Cytoskeleton
49
Biology
Undergraduate 4
02/19/2011

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Term
Cytoskeleton alternate name
Definition
Cytomusculature
Term
Main functions of cytoskeleton
Definition

1. Governs cell form and polarity

2. Mediates cell movement and cell locomotion

3. Mediates organelle movement and vesicular transport

4. Cell machinery for cell division

Term
Term for chromosome movements
Definition
Karyokinesis
Term
Term for cell separation or cleavage
Definition
Cytokinesis
Term
Cytoskeleton dynamic property
Definition

Dynamic polymers: frequently undergo assembly/disassembly rxns

Critical to functionality of structural filaments and motors

Term
Cytoskeleton filament systems and properties
Definition

1. Intermediate filaments: numerous subunits, form long fibrous filaments (8-12 nm)

2. Microtubules (tubulin and associated proteins): Tubulins alpha/beta/gamma subunits, form long cylindrical tubes (25 nm)

3. Microfilaments (actin and associated proteins): Actins alpha/beta/gamma subunits, form long thin filaments and meshworks (6-8 nm)

Term
Principal structural element in most animal cells and tissue and locations it could be found
Definition
Intermediate filament. Epithelia, muscle, neurons (axons), epidermis (hair, nails)
Term
These fibers enmesh the nucleus, emanate from specialized cell junctions, and form mesh of nuclear lamina
Definition
Intermediate filaments
Term
Resilient fibers that resist mechanical cell stresses
Definition
Intermediate filaments
Term
Which filaments are closely associated in cells?
Definition
Microtubules and intermediate filaments
Term
Purpose of desmosome and hemidesmosome
Definition
Cell-to-cell adhesion and cell-to-extracellular matrix adhesion
Term
IF subunit structure
Definition

1. N-terminal globular head domain. Varies in size between different IFs

2. 40 nm rod-like domain. Coiled coil dimer between 2 alpha-helices

3. C-terminal global tail domain 

Term
IF higher order subunit assembly
Definition

1. 2 subunits form parallel dimer

2. 2 dimers form anti-parallel tetramer

3. Tetramers form protofilaments. Intertwine in helical pattern within polymer

Term
2 benefits of many long protofilaments
Definition

1. Greater thermal stability, meaning lower breakage problems

2. Can bend easily but not be pulled apart

Term
Two important classifications for IF proteins
Definition

1. Subunits: vary from 50-200 kD

2. Classified by ability to copolymerize

Term
5 types of IFs
Definition

Type I/II (epithelial). Keratins (cytokeratins)

Type III Vimentin-like: Vimentin and 3 related proteins

Type IV: Axonal/Neurofilaments

Type V: Nuclear/Nuclear lamins

Term
Info on kertain filaments
Definition

1. Composed of many different subunits. 44-70 kD. Found in epithelial cells

2. Acidic keratins (type I). ~15 subunits. Small C-terminal globular domains

3. Neural/basic keratins (type II). ~15 subunits. Large C-terminus globular domains

4. All keratin filaments contain equimolar parts acidic and basic/neutral subunits

5. Hard cytokeratins present in wool/hair/horns. Extensive disulfide bonding

Term
Functional role of keratin filaments exposed by skin diseases
Definition

For epidermolysis bullosa:

1. Severe blistering after mild pressure

2. Mutations in keratin genes expressed in basal cell layer

3. Keratins important for resisting mechanical stresses on epidermis

Term
Vimentin (type III) IF examples
Definition

1. Vimentin. From mesodermal origin. 54 kD. Found in fibroblasts, endothelia, adipocytes, white cells.

2. Desmin. In muscle. 53 kD. Found in smooth and skeletal muscle.

3. Glial fibrillary acidic protein (GFAP). 50 kD. Found in glial cells, astrolytes, Swann cells.

4. Peripherin. Nerve cells. 66 kD. Found in neurons.

Term
Vimentin feature
Definition
Can copolymerize or homopolymerize, but cannot polymerize with keratin
Term
Neurofilaments (type IV) features
Definition

1. Found in neurons

2. Present in all eukaryotes

3. Stabilize nuclear envelope and help organize chromatin

4. Contains Lamin A,B,C

Term
Neurofilament different subunits
Definition

1. NF-L (70 kD)

2. NF-M (150 kD)

3. NF-H (210 kD)

Term
Purpose of Lamins A/B/C
Definition

1. Contain nuclear localization sequence

2. Assemble into sheets on the inner nuclear membrane

3. Specific phosphorylation of lamin B involved in regulating nuclear lamina disassembly at nuclear envelope breakdown (NEB) and re-assembly during mitosis

Term
IF class, cell type, and function for IFAP epinemin
Definition

1. Vimentin desmin

2. Muscle mesoderm

3. Unknown

Term

IF class, cell type, and function for IFAP filaggrin

Definition

1. Keratin

2. Epidermis

3. IF bundling

Term

IF class, cell type, and function for IFAP paranemin

Definition

1. Vimentin desmin

2. Muscle

3. IF crosslinking

Term

IF class, cell type, and function for IFAP plectin

Definition

1. Vimentin

2. Mesoderm

3. IF crosslinking

Term

IF class, cell type, and function for IFAP synemin

Definition

1. Vimentin desmin

2. Mesoderm muscle

3. IF crosslinking

Term
Component polypeptide for and location of nuclear IF
Definition

1. Lamins A, B, & C

2. Nuclear lamina (inner lining of nuclear envelope)

Term

Component polypeptide for and location of vimentin-like IF

Definition

1. Vimentin, desmin, glial fibrillary acidic protein, peripherin

2. Muscle, glial cells, some neurons

Term

Component polypeptide for and location of epithelial IF

Definition

1. Type 1 keratins (acidic), type 2 keratins (basic)

2. Epithelial cells and their derivatives

Term

Component polypeptide for and location of axonal IF

Definition

1. Neurofilament proteins (NF-L, -M, -H)

2. Neurons

Term
Describe Lou Gehrig's disease and relation to IF's
Definition

1. AKA Amyotrophic lateral sclerosis

2. Mutation in neurofilaments

3. NF-L or -H key in causing disease

4. No signals shooting across axons

5. Is what Stephen Hawking has

Term
Purpose of nuclear lamins
Definition

1. Stabilize nucleus

2. Organize cell during split

3. Forms mesh covering for protection

Term
General and specialized microtubule functions
Definition

1. In all eukaryotic cells

2. For cell architecture and vesicle trafficking

3. Maintain cell shape and polarity

4. Determine the distribution of other cytoskeletal filaments

5. Position the organelles

6. Provide "tracks" for vesicles and chromosomes

Term

How are microtubulues linked to MTOCs for the following:

1. Ciliates/ flagellates

2. Interphase

3. Neurons

4. Mitosis

Definition

1. Basal bodies

2. Centrosomes

3. Centrosomes

4. Spindle poles

Term
What are microtubulues composed of?
Definition

1. Alpha, beta, and sometimes gamma subunits.

2. Gamma subunit specific example - MTOC centrosome/ spindle poles.

3. Multiple isotypes of each subunit exist and are coded by separate genes (6 alpha and 6 beta)

Term
Steps in tubulin synthesis and assembly
Definition

1. Nucleation: formation and dimers, association of dimers into protofilaments, lateral association of protofilaments to form tubulin wall

2. Elongation and propogation of microtubule from dimers

Term
Describe microtubule structural polarity
Definition
All subunits point in the same direction. Alpha tubulin exposed at the minus end, beta at plus end. More dynamic end is beta end.
Term
3 stages of microtubule assembly
Definition

1. Nucleation

2. Elongation

3. Steady-state/ equilibrium

Term
Describe dynamic instability
Definition
Transition between rapid growth and shrinkage due to GTP hydrolysis. Occurs at beta end (plus end) since alpha end cannot easily be hydrolyzed.
Term
Explain growth & shrinkage stages of dynamic instability
Definition

1. Growth: rate of tubulin assembly  > rate of GTP hydrolysis. Subunits have higher affinity for one another, making tubulin cap stable and growth stable.

2. Shrinking: GTP hydrolyze faster than assembly and expose beta end. Terms a catastrophe. Causes rapid shrinkage.

3. When cap reforms, tubulin able to grow again. Termed a rescue.

Term
2 drugs that affect microtubules and their effects on polymerization
Definition

1. Colchicine: Monomer sequestering. Stops nucleation of tubulin

2. Taxol: Polymer stabilizing. Keeps microtubules at SS

Term
SHOULD I PUT IN ACTIN-SPECIFIC AND MICROTUBULE SPECIFIC DRUGS?
Definition
Don't know yet
Term
Describe centrosome structure
Definition

1. Centrosome is an MTOC

2. Contains lots of alpha tubulin and alpha tubulin ring complex

3. Contains a pair of orthogonal centrioles

4. Centrioles organize centrosome matrix and ensure duplication during cell division 

Term
Where do microtubules grow from?
Definition
Alpha tubulin ring complexes of the centrosome
Term
Purpose of MAPs
Definition

1. Bind at side of MT and stabilize against disassembly

2. Mediate the interactions of other MTs

3. Targets of various kinases

Term
MAP2 and tau purposes
Definition

1. Both: shift rxn kinetics in favor of adding new subunits; stabilize SS microtubule, like taxol

2. Tau - possibly from overexpression of tau in brain, leading to Alzheimer's from aggregated proteins

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