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Cell and Molecular Biology Test 1
Cell and Molecular Biology Test 1
150
Biology
Undergraduate 2
02/11/2012

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Term
spastic paralysis
Definition
paralysis caused by the failure to relax muscles resulting in extreme rigidity
Term
flaccid paralysis
Definition
paralysis caused by the inability to contract muscles
Term
tetanus toxin
Definition
the toxin that causes tetanus
Term
botulinum toxin
Definition
the toxin that causes botulism (namesake of Botox)
Term
LD50
Definition
the lethal dose to kill 50% of the population
Term
enzymes
Definition
proteins that catalyze reactions in the body
Term
Michaelis-Menten Equation
Definition
V=(Vmax*[S])/(Km+[S])
Term
Vmax (Michaelis-Menten Equation)
Definition
rate at saturation for a given enzyme concentration in moles per unit time
Term
Km - Michaelis constant
Definition
substrate concentration that gives 1/2 maximal velocity
Term
photometric measurement
Definition
using light to measure something, the appearance of a product usually
Term
competitive inhibitors
Definition
molecules that bind at the active site of catalyzation to affect rate. can only change Km
Term
noncompetitive inhibitors
Definition
molecules that bind at another location on an enzyme that change conformation. can change Vmax
Term
allosteric regulation
Definition
the regulation of an enzyme or other protein by binding an effector molecule at the protein's allosteric site (that is, a site other than the protein's active site).
Term
catalytic domain
Definition
the area of an enzyme that catalyzes reactions
Term
regulatory domain
Definition
the area of an enzyme that functions as the on/off switch and controls the speed of catalyzation
Term
domains
Definition
structurally and functionally distinct regions of a single protein
Term
subunits
Definition
imply separate proteins that are stuck to one another and work together; one such protein is a subunit of the assembly.
Term
covalent modification
Definition
adding/removing groups by changing the nature of covalent bonds thereby affecting the enzymes catalyzation
Term
association-dissociation of subunits
Definition
One protein binds to another, thereby activating the enzymatic activity of one of them.
Term
cooperativity
Definition
One substrate aids or impedes catalysis by another
Implies multiple catalytic subunits.
type of regulation described by modified Michaelis-Menten equation
Term
hill coefficient (n)
Definition
indicates the number of binding sites or subunits
Term
modified Michaelis-Menten equation
Definition
V=(Vmax*[S]^n)/(Km^n+[S]^n)
Term
SNARE
Definition
membrane proteins that bind to one another and help pull vesicle and cell membranes together.
Term
vSNARE
Definition
extends from the vesicle membrane
Term
tSNARE
Definition
extends from the cell membrane (in this case)
Term
Synaptobrevin
Definition
the vSNARE found in synaptic vesicles containing neurotransmitters
Term
intestinal epithelium
Definition
the cells lining the inside of the intestines that are exposed to the outside world
Term
motor neurons
Definition
neurons that transmit signals to the motor cells
Term
endocytosis
Definition
the inverse of exocytosis whereby cells bring things into the cell in vesicles
Term
inhibitory neurons
Definition
neurons that inhibit functions (eg causes muscles to relax)
Term
light chain
Definition
the functional part of the toxin that causes the damage (zinc endopeptidase)
Term
zinc endopeptidase
Definition
the light chain that cleaves synaptobrevin. needs zinc to work
Term
turnover
Definition
the number of reactions per second per molecule
Term
arginine
Definition
the amino acid from which nitric oxide is synthesized
Term
nitric oxide synthases
Definition
enzymes that catalyze the reactions resulting in the production of nitric oxide
Term
coenzymes
Definition
things that aren't enzymes but aid the catalyzation process in the form of storing or passing along electrons
Term
Constitutive NOS (cNOS)
Definition
enzyme that is always active
Term
Inducible NOS (iNOS)
Definition
enzyme that is activated when it is needed and shut off when it isn't
Term
pathogenesis
Definition
The development of a disease. The origin of a disease and the chain of events leading to that disease.
Term
expectoration
Definition
the expulsion of mucus from the throat and lungs through the mouth
Term
cyanosis
Definition
the skin turning blue due to lack of oxygen
Term
hypoxia
Definition
a region receiving insufficient oxygen
Term
respiratory acidosis
Definition
the acidifying of the blood and other fluids caused by hypoventilation
Term
hypoventilation
Definition
shallow breathing leading to insufficient air exchange
Term
prevalence
Definition
the number of cases
Term
incidence
Definition
the number of new cases per year
Term
direct expenditures
Definition
money spent directly on the treatment of a disease. does not count lost wages and other indirect costs
Term
etiology
Definition
where something comes from
Term
phospholipids
Definition
the main component in the bilayer
Term
cholesterol
Definition
Serves to keep membranes fluid at low temperatures, yet reduces fluidity at high temperatures
Term
cell membrane thickness
Definition
4 nm
Term
integral membrane protein
Definition
protein embedded in the bilayer
Term
peripheral membrane protein
Definition
protein that hangs out alongside the bilayer but not attached
Term
transmembrane protein
Definition
subgroup of integral proteins that stick out of both sides of the bilayer
Term
lipid-anchored protein
Definition
protein near the bilayer that is attached but not actually in the bilayer
Term
unsaturation
Definition
the number of double and triple bonds in a carbon chain
Term
arachidonic acid
Definition
the reagent that undergoes catalyzation by lipoxygenase to form leukotriene
Term
leukocytes
Definition
white blood cells
Term
transmigration
Definition
the process of pushing through the blood vessel wall into the tissue
Term
basophils
Definition
leave the tissue to become mast cells.
Release substances that increase vascular permeability and recruit other immune cells - inflammation
Term
eosinophils
Definition
Generally involved in attacks on parasites and multicellular organisms
Term
mast cells
Definition
cells in the tissue that degranulate when stimulated and promote inflammation
Term
degranulate
Definition
to release the granules in the vesicles through exocytosis
Term
pro-inflammatory
Definition
substance that promotes inflammation by:
Recruit more white cells = “homing”
Increase vascular permeability
Term
cytokines
Definition
small proteins that pass signals between immune cells
Term
chemokines
Definition
a simple compound produced by one cell that effects the activity of another
Term
lipoxygenase
Definition
enzyme that converts arachidonic acid into leukotriene A4
Term
leukotriene A4
Definition
product of catalyzation of arachidonic acid that results in: white cell homing - eosinophils in particular
Increased vascular permeability, giving rise to edema
Bronchiole constriction due to smooth muscle contraction
Mucus secretion by respiratory epithelial cells
Term
vascular permeability
Definition
the capacity of a blood vessel wall to allow for the flow of small molecules (ions, water, nutrients) or even whole cells (lymphocytes on their way to the site of inflammation) in and out of the vessel
Term
edema
Definition
abnormal accumulation of fluid beneath the skin or in one or more cavities of the body that produces swelling
Term
bronchioles
Definition
the small airways in the lungs that comprise the majority of the air passageways
Term
epithelial
Definition
cells exposed to the exterior world
Term
-philia
Definition
too many
Term
-penia
Definition
too few
Term
eukaryotic
Definition
containing a nucleus
Term
synthetic
Definition
they will regenerate their secretory granules
Term
heterozygous
Definition
containing different genes for the same trait
Term
prognosis
Definition
the outlook for treatment and longevity
Term
mucociliary
Definition
relating to mucus and cilia in the chest
Term
sputum
Definition
mucus that is coughed up from the lower airways
Term
chronic
Definition
persistent and long lasting condition
Term
endobronchial
Definition
inside the bronchioles
Term
dypsnea
Definition
shortness of breath (SOB), or air hunger, is the subjective symptom of breathlessness.
Term
pancreatic insufficiency
Definition
the inability to properly digest food due to a lack of digestive enzymes made by the pancreas.
Term
diabetes
Definition
improper adjustments to the level of sugar in the blood
Term
arthritis
Definition
inflammation in the joints
Term
typical membrane potential
Definition
~-70 mV
Term
electrochemical gradient
Definition
the combination of chemical and electrical effects that predicts the movement of molecules across a cell membrane
Term
DG for transport into a cell equation
Definition
DGin = R*T*ln([x]in/[x]out) + z*F*Vm
Term
primary active transport
Definition
Energy from ATP hydrolysis is used directly by the transporter to move a substance
Term
secondary active transport
Definition
Energy from an electrochemical gradient is used to drive the transport of another substance
Term
DG from ATP hydrolosis
Definition
~-9,000 cal/mol
Term
lumenal
Definition
inside an organ such as the stomach
Term
chloride channel
Definition
protein that allows chloride ions to pass through
Term
passive diffusion
Definition
the movement through cell membranes driven by the electrochemical gradient without the help of proteins
Term
facilitated diffusion
Definition
using proteins to move down the electrochemical gradient
Term
phosphorylation
Definition
the attaching of a phosphate group to a protein to activate it
Term
hypotensive
Definition
not enought tension in the blood vessel walls
Term
hypovolemic shock
Definition
emergency condition in which severe blood and fluid loss makes the heart unable to pump enough blood to the body. This type of shock can cause many organs to stop working
Term
cholera toxin
Definition
the toxin that causes cholera
Term
G protein
Definition
class of proteins that hydrolyze GTP and function as a second messenger system
Term
post translational modification
Definition
changes made to the structure of proteins after they have been synthesized
Term
ribosylation
Definition
the addition of one or more ADP-ribose moieties to a protein
Term
transferases
Definition
enzyme that catalyzes the transfer of a functional group (e.g., a methyl or phosphate group) from one molecule (called the donor) to another (called the acceptor)
Term
hydrolases
Definition
an enzyme that catalyzes the hydrolysis of a chemical bond. reverses ribosylation
Term
kinases
Definition
type of enzyme that transfers phosphate groups from high-energy donor molecules
Term
phosphatases
Definition
enzyme that removes a phosphate group from its substrate
Term
guanylyl cyclase
Definition
enzyme that catalyzes the generation of cGMP
Term
cyclic guanosine monophosphate (cGMP)
Definition
molecule created by guanylyl cyclase that goes on to activate protein kinase G
Term
protein kinase G (PKG)
Definition
phosphorylates things, including proteins that control intracellular calcium concentrations, lowering them.
Term
phosphodiesterase
Definition
converts cGMP to GMP
Term
cysteine thiol
Definition
semiessential amino acid containing a sulfur atom
Term
nitrosothiol
Definition
organic compounds or functional groups containing a nitroso group attached to the sulfur atom of a thiol
Term
transnitrosation
Definition
donation of a NO moeity
Term
reducing environment
Definition
conditions that lower the oxidation number of the products
Term
fasciculation
Definition
a small, local, involuntary muscle contraction and relaxation which may be visible under the skin
Term
sporadic
Definition
Occurring at irregular intervals or only in a few places; scattered or isolated.
Term
familial
Definition
tending to occur in more members of a family than expected by chance alone
Term
superoxide dismutase (SOD1)
Definition
a class of enzymes that catalyze the dismutation of superoxide into oxygen and hydrogen peroxide
Term
axonal transport
Definition
The movement of organelles and molecules down a nerve cell's axon to its terminals
Term
microtubules
Definition
protein polymers in the cell composed of tubulin proteins and aiding in intracellular transport "railroad of the cell"
Term
tubulin
Definition
molecules that come together in dimers to form microtubules
Term
microfilaments
Definition
proteins formed of actin that help give the cell shape and mobility
Term
intermediate filaments
Definition
relatively stable fibers that lend strength to the tissue
"intermediate" in size, between microtubules and microfilaments
Term
keratins
Definition
found in all cells, and form the tonofilaments of epithelia
Term
tonofilaments
Definition
load bearing structures
Term
neurofilaments
Definition
support the girth of the cell and structure
Term
β-tubulin
Definition
(+) end of a tubulin dimer
Term
α-tubulin
Definition
(-) end of a tubulin dimer
Term
heterodimers
Definition
compounds containing two distinct molecules that exist together
Term
protofilaments
Definition
the film formed by the aggregation of tubulin dimers that rolls up into microtubules
Term
GTPases
Definition
compounds that bind and hydrolyze GTP
Term
nucleation
Definition
the beginning of chemical or physical changes at discrete points in a system
Term
microtubule organizing centers
Definition
a composition of γ, δ, and ε tubulins that aid in the nucleation process. form a stable (-) end that microtubules can grow out of.
Term
myosin
Definition
fibrous protein that forms (together with actin) the contractile filaments of muscle cells
Term
molecular motor
Definition
machines that are the essential agents of movement in living organisms
Term
monomers
Definition
small molecule that may bind with others to form chains
Term
polymerization
Definition
the growth of a molecule by the addition of monomers
Term
critical concentration (Kc)
Definition
the monomer concentration [m] at which the rate of monomer addition equals the rate of monomer loss.
Term
catastrophe
Definition
the rapid disassembly of microtubules caused by the hydrolysis of the GTP cap
Term
chemotherapeutic
Definition
treatment of cancer using specific chemical agents or drugs that are selectively destructive
Term
anitmitotics
Definition
shut down mitosis
Term
Taxol
Definition
chemotherapy drug that stabilizes microtubules so they don't catastrophically disassemble
Term
colchicine
Definition
amino acid that causes the dissassembly of microtubules
Term
polypoid
Definition
containing too many chromosomes
Term
overexpression
Definition
excessive expression of a gene by producing too much of its effect or product
Term
thymosin
Definition
monomer buffer that serves to lower the monomer concentration
Term
profilin
Definition
a shuttle that will move monomers and quicken the growth process
Term
lamellipodia
Definition
cytoskeletal protein actin projection on the mobile edge of the cell
Term
pseudopodia
Definition
temporary projections of eukaryotic cells
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