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Cancer Genetics
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191
Biology
Graduate
11/19/2009

Additional Biology Flashcards

 


 

Cards

Term
6 Hallmarks of Cancer
Definition

  1. Self-sufficiency in growth signals
  2. insensitivity to growth-inhibitory signals
  3. Tissue invasion and metastasis capability
  4. Limitless replicative potential
  5. Sustained angiogenesis
  6. Evasion of programmed cell death (apoptosis)

Term
Signaling molecules which are txmitted through transmembrane receptors
Definition

Diffusable growth factors

Extracellular matrix components

Cell-to-cell adhesion/interactions

Term
Oncogene
Definition

A gene that has experienced a gain of function mutation that promotes cell proliferation instead of apoptosis (dominant)

--

An oncogene is a gene that, when mutated or expressed at high levels, helps turn a normal cell into a tumor cell.

Many cells normally undergo a programmed form of death (apoptosis). Activated oncogenes can cause those cells to survive and proliferate instead. Most oncogenes require an additional step, such as mutations in another gene, or environmental factors, such as viral infection, to cause cancer. Since the 1970s, dozens of oncogenes have been identified in human cancer. Many cancer drugs target those DNA sequences and their products.

 

Term
Tumour-suppressor genes
Definition

Loss of function mutations in genes that restrain cell proliferation or guard the genome (recessive)

--

tumor suppressor gene, or antioncogene, is a gene that protects a cell from one step on the path to cancer. When this gene ismutated to cause a loss or reduction in its function, the cell can progress to cancer, usually in combination with other genetic changes.

Term
2 examples of proto-oncogenes
Definition

ErbB2/HER/NEU

RAS

Term
Proto-oncogene
Definition
proto-oncogene is a normal gene that can become an oncogene due to mutations or increased expression. Proto-oncogenes code forproteins that help to regulate cell growth and differentiation. Proto-oncogenes are often involved in signal transduction and execution ofmitogenic signals, usually through their protein products. Upon activation, a proto-oncogene (or its product) becomes a tumor-inducing agent, an oncogene
Term

ErbB2/HER2/Neu

 

  • What is
  • What happens during overexpression
  • What extends the life of breast cancer patients w/over-expression of Her2

 

Definition

 

  • Receptor tyrosine kinase of the epidermal growth factor receptor (EGFR) family
  • Overexpression of receptor makes much more sensitive to ligand
  • Herceptin is a monoclonal antibody shown to extend the life of breast cancer patients that over-express Her2

 

Term

RAS

 

  • What is
  • Mutation creates what and does what
  • RAS is altered in __% of all human cancers

 

Definition
  • RAS is a small GTPase; an intracellular switch that can be fixed in the "on" position; RAS normally cycles between active and inactive forms
  • Mutation creates structural alterations that generate extended firing periods
  • 25%

GEF and GAP

Term
Viral oncogenes
Definition
Viruses which have "picked-up" host proto-oncogenes and incorporated them into their own genome
Term
4 steps of apoptosis
Definition

Disruption of cell membranes

Structural filaments broken down

Chromosomes degraded

Debris is phagocytosed

Term
Triggers of cellular death: Surface sensors (2)
Definition

Survival Signals (IGFs, interleukins)

Death signals (FAS, TNF-alpha)

Term
Evasion of apoptosis (other than intracellular signals; 3 )
Definition

DNA damage

Overexpressed oncogenes

Hypoxia

Term
Triggers --> Cytochrome C --> Capases --> Breakdown
Definition
Term
What family of proteins promote or block apoptosis?
Definition
Bcl-2 family
Term
Most common way to evade apoptosis
Definition
Loss of p53 (mutant cells not able to die in response to DNA damage)
Term
Pioneering cells
Definition
Invade nearby tissues and travel, often by circulatory system, to distant sites where they form new colonies
Term
Colonising cells
Definition
Must have the ability to adapt to their new environments and develop a new blood supply
Term

Tumour angiogenesis

 

  • What protein regulates expression of genes involved in angiogenesis
  • Hydroxylated when?

Definition

HIF regulates expression of genes involved in angiogenesis

 

  • Under nl conditions, HIF is hydroxylated
  • During hypoxia, unhydroxylated HIF is stabilised and can bind coactivators, allowing for cellular division

 

Term
Cellular crisis
Definition
Apoptotic cell death provoked by erosion of telomeres
Term
CDK1 pairs with
Definition
Cyclins A & B
Term
CDK2 paired with
Definition
Cyclins E & A
Term
CDK4/6 paired with
Definition
Cyclin D
Term
Example of self-sufficiency in growth signals
Definition
Activate H-Ras oncogene
Term

Example of insensitivity to growth-inhibitory signals

Definition
Lose rb suppressor
Term

Example of tissue invasion and metastasis capability

Definition
Produce IGF survival factors
Term

Example of limitless replicative potential

Definition
Turn on telomerase
Term

Example of sustained angiogenesis

Definition
Produce VEGF inducer
Term

Example of evading apoptosis

Definition

  • Bcl-2 family of proteins
  • loss of p53 function

Term

CdKi

  • Expression regulated by __; instigated by; resulting in ____

Definition
Expression regulated by GF signalling antigrowth signals instigated by TGF-beta up-regulated p15 resulting in inhibition of cyclin D/CdK4
Term
CdKs in cell cycle
Definition
Page 14
Term
How does TGF-beta work?
Definition

  • TGF ligands bind to a type II receptor
  • This recruits and binds a type I receptor
  • Type I receptor phosphorylates receptor-regulated SMADs which can now bind the coSMAD SMAD4.  
  • R-SMAD/coSMAD complexes accumulate in the nucleus where they act as txption factors and participate in the regulation of target gene expression

Term
Specific, how does TGF-beta work?
Definition

  • Wildtype type II TGF-beta receptor and TGF-beta --> S/T kinase --> SMAD3 binds to SMAD4 --> Expression of p15ink4b and p21clp1

Term
5 ways cells escape from TGF-beta signalling
Definition

 

  1. Down-regulation or mutation of receptor
  2. Loss of SMAD4
  3. Deletion of p15 CDKi
  4. Mutation of CDK4
  5. Overexpression of Myc (v-myc)

 

Term
Rb is a ____ gene
Definition
Tumour suppressor (recessive)
Term
Rb phosphorylation
Definition

  • Unphosphorylated = G0 and early G4 (activity on)
  • Hypophosphorylated = pre-restriction point G1 (activity on)
  • Hyperphosphorylated = post-restriction point (activity off)

Term
Rb binds to:
Definition
E2F Family of transcription factors
Term
Virus-induced escape from restriction point
Definition

Def- a DNA tumour virus encodes proteins that inactivates Rb or tags it for protolysis

 

Ex- F1A (adenovirus); T-ag (SV40), E7 (HPV)

Term

Genetic repair

Fidelity is normally very high, and rare mutations are usually repaired, but...(3)

Definition

 

  1. Repair is not 100%, and becomes less precise with age
  2. Repair pathway genetics may be mutated
  3. Massive carcinogen exposure

 

Term

Incorporation of errors during DNA synthesis:

 

  • When DNA polymerase is present:
  • When proofreading is present:
  • When mismatch repair is present:

 

Definition

 

  • 10^5
  • 10^7
  • 10^9

 

Term
Microsatellites
Definition
Areas of the genome particularly susceptible to mutation
Term
Types of mutation
Definition

 

  1. Incorporation of errors during DNA synthesis
  2. Ntt decay
  3. DNA damage
  4. Pyrimidine dimers

 

Term
Ntt decay examples (3)
Definition

Depurination (mammalian cells sustain more than 10,000 abasic sites per day; def-A & G

 

Depyrimidination

 

Spontaneous deamination

Term
DNA Damage (3 causes)
Definition

 

  1. Oxidative damage (endogenous)
  2. Chemicals
  3. Radiation (UV, xrays, etc)

 

Term
How are pyrimidine dimers fixed for the next generation?
Definition
Normally they are repaired, but if they are not 'error prone' DNA polymerases can replicate past the lesion, occassionally incorporating the wrong base
Term
Specific mutagens (3)
Definition

  1. Polycyclic aromatic hydrocarbons (lung epithelium)
  2. Ultraviolet light (epidermis)
  3. Aflatoxin (liver)

Term

Polycyclic aromatic hydrocarons

  • Source
  • Damage
  • Effect

Definition

  • Smoke/environment
  • DNA adducts
  • G to T

Term

UV Light

  • Source
  • Damage
  • Effect

Definition

  • Sun
  • Pyrimidine dimers
  • Point mutation

Term

Reactive oxygen species (ROS)

  • Source
  • Damage
  • Effect

Definition

  • Normal metabolism/x-rays
  • abasic sites/ss and ds breaks/cross-links
  • Point mutation/translocation

Term

Aflatoxin

  • Source
  • Damage
  • Effect

Definition

  • Diet (peanuts)
  • DNA adducts
  • G to T

Term

Heterocyclic amines

  • Source
  • Damage
  • Effect

Definition

  • Diet (cooked meat)
  • DNA adducts
  • G to T

Term
4 pathways to correct DNA damage
Definition

  1. Mismatch
  2. Ntt excision repair
  3. Homology-based repair (HR)
  4. Non-homologous end joining (NHEJ)

Term
Steps in mismatch repair
Definition

  1. Binding of mismatch proof-reading proteins
  2. DNA scanning detects nick in new DNA strand
  3. Strand removal
  4. Repair DNA synthesis

Term

Examples of mismatch repair genes mutated in cancer cells

 

Mutation causes what

Definition
MSH2, MLH1 (hereditary nonpolyposis colon cancer); mutation leads to microsatellite instability (effects expression of genes eg, TGF-beta)
Term

Ntt excision repair

  • Def
  • Steps
  • Example of dx of repair system

Definition

  • Repairs bulky DNA adducts and pyrimidine dimers by a multi-step process
  • Detection (distortion); excision (endonuclease); DNA synthesis (delta or epsion); ligation

Term

Triggers of dbl-strand break repair (HR & NHEF)

(3)

Definition

 

  • Reactive oxidation species
  • DNA topisomerase inhibitor (chemo)
  • "replicative stress"

 

Term
Definition of homology-based repair
Definition
Uses other chromatid as a template
Term
Steps of homology-based repair
Definition

  • Melt helix of nl chromosome in the appropriate region
  • Invasion by the free end of severed strand by DNA polymerase
  • Extension of severed strand by DNA poymerase
  • Re-joining of the severed strand with DNA from the other side of break

Term
Homology-repair functions to repair lesions where and during which part of the cycle
Definition
Replication fork ; G2
Term
Which genes involved in HR
Definition
BRCA1/2
Term
Non-homologous end joining used when
Definition
Involves loss of sequence; repairs DS at all stages of the cell cycle; error-PRONE
Term
NHEJ steps
Definition

  • Dbl strand break
  • Resection of single strands by exonuclease
  • DNA strands brought together; possible limited base pairing between them
  • Strands filled in; joined by ligation
  • Double helix reconstruction

Term

Gene: BRCA1/2

Affected pathway:

Definition
DS break repair
Term

Gene: p53 and CHK2

Affected pathway:

Dx/syndrome:

Definition

Damage detection and signalling

Li-Fraumenti

Term

Gene: BLM (helicase)

Affected pathway:

Dx/syndrome:

Definition

DNA replication

Solid tumour

Term

Gene: MMR genes

Affected pathway:

Dx/Syndrome:

Definition

Mismatch repair

Colon cancer (HNPCC)

Term

Gene: XP group of genes

Affected pathway:

Dx/syndrome:

Definition

NER

Xeroderma pigmentosum

Term

  • Entrance to "S" phase is block when:
  • Entrance to "M" is blocked if:
  • Entrance to anaphase is blocked if:

Definition

  • Genome is damaged
  • DNA replication is not complete
  • Chromosomes are not assembled on the mitotic spindle

Term
In most cancers the ___ checkpoint is compromised
Definition
G1
Term
How p53 arrests cell cycle
Definition
p53 --> Increase p21cip1 --> Cell cycle arrest
Term
P21 inhibits:
Definition

 

  • Cdk2 (preventing entry to S)
  • PCNA (halting DNA replication already taking place)
  • Other targets? (Ciz1; Cip1-Interacting zinc finger protein)

 

Term
Cells that lack p53 rely on
Definition
a different surveillance pathway that blocks cell cycle progression after G1-S
Term

PCNA

  • What is
  • What does
  • What does p21 do?

Definition

  • DNA polymerase accessory factor - 'sliding clamp'
  • Attracts DNA repair factors to arrest DNA replication forks
  • p21 inhibits the DNA replication activity of PCNA but leaves its repair activity intact

Term
Molecular basis of the DNA damage response
Definition

Damage = ds breaks

Damage detection = sensor molecules

Damage signaling = transducer molecules

Damage response = mediator molecules

Damage repair = effector molecules

Term
DNA damage detection by PIKKs
Definition

 

  • PIKK = Pi3 kinase family are check point proteins
  • Recruited to sites of damage by partner proteins, where they phosphorylate downstream targets

 

Term
Damage signaling messengers that are serine/threonine kinase which relay signals from PIKKs
Definition
Chk1 and Chk2
Term
Chk1 mainly activated by ___ in response to ____
Definition

Chk1 mainly activated by ATR in response to replicative stress

Term

Chk2

 

  • Activated by ___ at sites of ___
  • homodimerization/autophosphorylation

 

Definition

 

  • Activated by ATM at sites of double strand breaks
  • Phosphorylation by ATM promotes homodimerization and autophosphorylation of Chk2
  • Resulting structural alteration allows Chk2 to phosphorylate other substrates
  • Spreads signal throughout the nucleus

 

Term

Gene: ATM

Affected pathway:

Dx/syndrome:

 

Definition

Gene: Ataxia Talengectasia Mutated

Affected pathway: Response to DS breaks

Dx: Ataxia talengectasia (lymphomas)

Term
Which DNA damage response pathway is default
Definition

NHEJ

HR is cell-cycle regulated (G2)

Term
ATM initiates which DNA damage response pathway
Definition
HR or NHEJ
Term

Loss of BRCA1/2 confers susceptibility to cancer; germ-line mutation in either causes cancer in:

  • __% of familial breast cancer
  • __% of ovarian cancer

Definition

  • 50% breast
  • 70% ovarian

Term
Precursor lesions of breast, lung, colon, and bladder cancers express markers of _____
Definition
Activated DDR
Term
How DDR works
Definition

  • At an early stage, incipient tumour cells experience 'oncogenic stress'
  • They respond by activating protective pathways (arrest or die)
  • Mutations compromising these pathways (including defects in ATM, Chk2, p53) might allow cell proliferation and survival
  • This compromises the checkpoints and results in increased genomic instability and tumour progression
  • IN OTHER WORDS: chronic activation leads to deactivation and then to hyper mutation

Term
Inefficient DNA replication causes replication forks to slow or stall.  How might this happen (5)
Definition

 

  1. Disruption of ntt pools (mutation of synthetic pathways or nutrient deprivation)
  2. DNA damage or protein obstructions that blocks replication from progressing
  3. DNA secondary structure that affects unwinding
  4. Altered expression of replication factors (eg, cyclin E)
  5. Passage of DNA replication forks turns SS breaks into DS breaks

 

Term
Replicative stress induced by ___
Definition
Over-expression of oncogenes
Term

Activated oncogenes

Unscheduled replication

Aberrent replication structures

_____

___ or ___

_____

_____

Definition

Activated oncogenes

Unscheduled replication

Aberrent replication structures

ATR/Chk1

gamma-H2AX or P53

Growth arrest or cell death or mutation

Term

Activated oncogenes

Unscheduled replication

DNA Damage

_______

___ or ___

_____

_____

Definition

Activated oncogenes

Unscheduled replication

DNA damage

ATM/Chk2

gamma-H2AX or P53

Growth arrest or cell death or mutation

Term
p53 complexes with:
Definition
SV40 T-antigen
Term
___% of cancers show mutations in p53 mainly located in the central DNA
Definition
~50%
Term
Germline mutations in p53 is observed in:
Definition
Li-Fraumeni syndrome
Term
Activated p53 can suppress tumours by: (3)
Definition

  1. Cell cycle arrest
  2. DNA repair
  3. Apoptosis

Term
How is p53 degraded?
Definition
Under basal conditions, MDM2 forms a complex with p53 and functions as a ligase to carry out its degradation
Term
Where is p53 localised genetically?
Definition
Chromosome 17
Term

p53 mutation typically is what kind of mutation?

Results in what phenotype?

Definition
a missense mutation in one allele; results in high levels of a non-functional protein
Term
Tumour suppressor genes --> Prevent cell replication --> Brakes via ____
Definition
p53
Term
Proto-oncogenes --> Allow cell replication --> Accelerator via ___
Definition
MDM2
Term

Post-translational Modification - Phosphorylation

 

  • Response to
  • Which molecule

 

Definition

 

  • Phosphorylation
  • ATM

 

Term

Post-translational Modification - Acetylation

 

  • Response to
  • Which molecule

 

 

Definition
  • Stress
  • p300

 

Term

Post-translational Modification - Methylation

 

  • Response to
  • Which molecule

 

 

Definition

 

  • Stress
  • SET9

 

Term

Post-translational Modification - Sumoylation

 

  • Response to
  • Which molecule

 

Definition

  • Stress
  • PIAS

Term

Post-translational Modification - Ubiquitination

 

  • Response to
  • Which molecule

 

Definition

  • Basal
  • MDM2

Term
Post-translational modification vs. increase in transcription of the p53 gene: (5)
Definition

 

  1. Rapid
  2. Reversible
  3. Requires less energy
  4. stress dependent
  5. sensitive to the magnitude of stress

 

Term
p53 gene - what binds to transactivation
Definition
HPVE6 and MDM2
Term
p53 gene - what binds to DNA binding domain
Definition
SV4
Term

95% of all mutations in p53 are located where

Definition
In the central DNA binding domain
Term

MDM2

  • Def
  • Does what
  • MDM2-/-
  • MDM2-/- ; p53-/-

Definition

  • Def = murine double minute clone 2
  • Keeps p53 under control
  • Embronically lethal
  • Viable

Term

Activation of p53 function without DNA damage

  • Happens why
  • Critical p53 residues are
  • Bonds where
  • Druggable target?

Definition

  • Inhibition of MDM2-p53 interaction
  • Phe-19, Trp-23, and Leu-26
  • Hydrophobic pocket on MDM2
  • Yes.  Strategy would be used in tumours that: retain wild-type p53 (~50% of tumours) and overexpression of MDM2 (~7% of tumours)

Term

Sirtuins

  • What are
  • Example in humans
  • Does what

Definition

  • NAD+ dependent protein deacetylases
  • Resveratrol in red wine
  • Increases lipid metabolism, improves muscle function, inhibits alzheimers

Term
Cancer spreads through the body by two mechanisms:
Definition
Invasion and metastasis
Term
Invasion
Definition
Direct migration and penetration by cancer cells into neighbouring tissues
Term
Metastasis
Definition
The ability of cancer to penetrate into lymphatic and blood vessels, circulate through the bloodstream, and then invade normal tissues elsewhere in the body to form secondary tumours
Term
MMP
Definition
Matrix metalloproteinases
Term

MMP

  • Def
  • What happens during cancer
  • Expression in cancer often is associated with

Definition

  • Family of proteases that collectively can degrade virtually all components of the ECM
  • Upregulated in almost every type of cancer
  • Poor survival

Term
MMP activity is important in all the major cellular activities involved in cancer progression including: (4)
Definition

  1. Tumour growth
  2. Angiogenesis
  3. Invasion
  4. Intravasation and extravasation

Term
3 examples of MMP in breast cancer
Definition

  1. Some of the oncogenes, implicated in breast cancer development (such as myc and ras) can induce expression of MMP-2 and MMP-9 in breast cancer cell lines
  2. Overexpression of MMP-3 in transgenic mice causes malignant mammary gland tumours
  3. High levels of MMP-2 and MMP-11 correlate with poor prognosis in breast cancer patients

Term
Inhibition of MMP activity can inhibit ___
Definition
migration
Term

MT1-MMP

  • First identified where; did what; located where
  • MMP2 were identified where

Definition

  • Lung carcinoma cells; acted to degrade ECM proteins and activate proMMP-2; located at the leading edge of migrating cells facilitating ECM degradation
  • Lung, gastric, colon, liver, breast, bladder, ovarian, cervical, and brain tumours

Term
Metastasis causes death in over __% of cancer patients
Definition
90%
Term
Steps of invasion
Definition

 

  • Angiogenesis; as the primary tumour grows it reaches a critical size where it needs to generate its own bld supply to meet its metabolic needs
  • Intravasation; tumour cells use this new bld supply to enter circulation
  • Extravasation; tumour cells travel in the blood to distant sites where they leave circulation
  • Secondary tumour forms

 

Term
__/____ cells survive transport
Definition

1/10,000 cells survive transport

Term
Steps of angiogenesis
Definition

  1. Tumour cells release angiogenic factors to surrounding tissue
  2. Activates specific genes in that tissue to encourage growth of new blood vessels

Term
Angiogenic growth factors (3)
Definition

VEGF (vascular endothelial growth factor)

FGFs (Fibroblast growth factor)

TGFs (Transforming growth factors)

Term
Inhibitors of angiogenesis
Definition
Angiostatin and Endostatin
Term

Angiostatin

  • Does what genetically
  • Phenotypic results

Definition

  • Downregulates VEGF expression
  • Increases EC and tumour cell apoptosis; inhibits EC proliferation; decreases blood vessel density

Term

Endostatin - XVIII collagen

 

  • Does what genetically
  • Phenotypic results

 

Definition

  • Blocks binding of VEGF with its receptor
  • Inhibits EC proliferation; reduces EC migration

Term

Soil and Seed

  • Def
  • What cancers form bone metastases

Definition

  • Cancer cells often display a selective pattern of metastasis; cells released from primary tumours often home to proferred target issues
  • Prostate and breast cancers

Term

S&S Hypothesis

 

  • By whom
  • Did what
  • Challenged?

 

Definition

  • Stephen Paget
  • Analysed 900 autopsy records for patients with different primary tumours; identified non-random metastatic tissue distributition.  "Seed" "Soil"
  • James Ewing; claimed that circulatory patterns and mechanical influences were suficient to explain organ-specific metastasis
  • Current evidence supports a role for both

Term

Soil and Seed - Mechanical factors

  • Def
  • Capillaries

Definition

  • Blood flow will initially direct cancer cells released from the primary tumour; first pass organ = the first organ encountered that lies downstream of the primary tuour in the circulatory system
  • Capillary vessel diameter (3-8 microm) allows passage of RBCs (~7 microm); cancer cells (~20 microm) will arrest in capillary bed by size restriction; Will also embolise with platelets and bld cells

Term
3 models of metastic capability
Definition

  1. The prevailing model of metastasis suggests that a minority of tumour cells with metastatic potential escape form distant metastases
  2. In humans, breast cancer expression profiles of the primary tumour can predict disease outcome.  The capacity to metastise is displayed by the whole tumour-cell population. A poor-prognosis signature strongly predicts the development of metastasses, incontrast to the good=prognosis signatures
  3. A variant model for the primary tumours that have high metastatic capacity and displays the poor-prognosis signature.  Within this group, subpopulations of cells also display a tissue-specific expression profile predicting the site of metastasis

Term

Targeted metastasis of primary breast cancer cells

  • Cancer vs. nl cels express large amount of
  • These do what

Definition

  • CXCR4 chemokine receptor
  • Chemokines (such as CXCL12) recognise these receptor are released by certain organs such as bone marrow, liver, and lung (kidney = low)
  • Breast cancer cells with elevated expression of IL-11, MMP-1, CXCR4, CTGF (connective tissue growth factor) and osteopontin are associated with high bone metastatic potential in vivo
  • Breast cancer populations that did not express any of these genes did not generate bone metastases

Term
Bone metastases classified as being:
Definition

  • Osteolytic - resulting from breast/lung primaries
  • Osteoblastic - resulting from prostate primaries

Term

Osteolytic bone metastases RANK/RANKL

How it works

Definition

 

  • Production of PTH or PTHrP, IL-1, IL-6, and IL-11 by tumour cells stimulates RANKL expression
  • Some of these factors (for example, PTHrP) also decreases the production of OPG
  • Signalling through RANK activates transcription factors such as AP1 and NF-kappaB leading to the differentiation of osteoclast progenitors into mature osteoclasts

 

Term

Osteoblastic bone mets in prostate ca

Tumour cells release ___ to promote osteoblast activity and bone formation

Definition

FGF - Fibroblast growth factor

BMP - Bone morphogenic proteins

PDGF - Platelet-derived GF

TGF-beta - Transforming GF-beta

Term

Prostate

 

Proteases, such as ___ and __ are induced by activators, such as _____

Definition

prostate-specific antigen and plasmin

urokinase-type plasminogen activator (uPA)

Term

·      Proteases, such as prostate-specific antigen and plasmin, are induced by activators, such as urokinase-type plasminogen activator (uPA)

 

These proteases:

Definition

  • Activate latent TGF-beta
  • Release insulin-like growth factor (IGF) from inhibitory binding proteins (IGFBPs)
  • Inactivate the osteolytic factor PTHrP

Term
Vicious cycle hypothesis of osteolytic metastases
Definition

 

  • Interactions between tumour cells and osteoclasts cause not only osteoclast activation and bone destruction, but also aggressive growth of the tumour
  • Bone resorption releases bone-derived growth factors, including TGF-beta and IGFI, and raises extracellular [Ca]
  • The GFs bind to receptors on the tumour-cell surface and activate signalling through pathways that involve SMAD and mitogen-activated protein kinase (MAPK)
  • Extracellular Ca binds and activates Ca pump. Signalling through these pathways promotes tumour-cell proliferation and production of PTHrP
  • Other cytokines might be involved, such as IL-1, IL-6, IL-11, and IL-18

 

Term

How many different types of cancer/

What accounts for >50% of all new cases

Definition

>200

Breast, lung, colorectal, and prostate

Term
Most common cancer in UK
Definition
breast
Term
Cancer - responsible for __% of all deaths in 2006
Definition
27
Term
__% of all cancer deaths liked to smoking (including ~__% of lung cancer deaths)
Definition
33%; 80%
Term
Carcinoma
Definition
Cancer originating in epithelial cells
Term
__% of adult cancers originate in epithelial cells
Definition
>80%
Term

Epithelial differentiation varies in (3)

This reflects differences in:

Definition

  1. Susceptibility to cancer
  2. Risk factors
  3. Molecular genetic pathways
1. Exposure to carcinogens (availability and metabolism)
2. Tissue-specific function and programming

Term

Intestine

  • Cell types
  • Function
  • High turnover rate?
  • Exposed to carcinogens how?

Definition

  • Non-stratified, "simple," columnar epithelium
  • Absorptive, mucus-secreting fx
  • Yes; cells shed from surface (anoikis); Replaced from proliferative pool; irreversible loss of proliferative capacity during differentiation
  • Diet or gut pathogens

Term

Urinary bladder

  • Lined with what
  • Proliferation how
  • Rate of apoptosis

Definition

  • Urothelium (specialised-barrier epithelium)
  • Proliferation "switch:" mitotically-quiescent but high regenerative capacity in response to injury/infection
  • Low rate of apoptosis

Term
Exposure of carcinogens excreted in urine: (3)
Definition

Drugs/metabolites

Environment

Industrial

Term
Bladder cancer presentation
Definition

70% superficial papillary dx

20% invasive dx

10% carcinoma in situ

Term

superficial papillary dx

  • Rate of recurrence
  • Rate of progression
  • Predictive markers of progression?

Definition

  • High
  • Low (<5% Ta & ~30% T1)
  • None

Term

Invasive disease

  • Outcome

Definition
Poor outcome; <50% 5yr survival
Term

Carcinoma in situ

  • Def
  • Rate of progression

Definition

  • An early form of carcinoma defined by the absence of invasion of surrounding tissues.  IOW, neoplastic cells proliferate their nl habitat
  • High rate of progression

Term

Bladder ca

  • Dx made on
  • Bladder cancer is staged according to what
  • Low grade
  • High grade

Definition

  • histopathology
  • according to depth of invasion/spread
  • well differentiated, good prognosis
  • poorly differentiated (anaplastic), poor prognosis

Term
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Definition
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Term
What cells express uroplakin?
Definition
Terminally differentiated, superficial cells, therefore making an objective marker of urothelial differentiation
Term
Uroplakins contribute to what; what does knockout do?
Definition
Contributes to transcellular barrier function; knockout mice havve a leaky urothelium
Term
How does one drive urothelium-specific expression?
Definition
Uroplaking gene promoter can be used to drive urothelium-specific expression
Term
Uroplakin Ras/p53 model
Definition
  • Mouse uroplakin II gene promoter to target expression of p53DN (dominant negative) mutant in urothelium of transgenic mice
  • p53DN binds and stabilises endogenous wilt-type p53 -- induces nuclear abnormality, hyperplasia, and occasionally dysplasia, not carcinoma
  • Transgenic mouse with activated Ha-Ras induced urothelial hyperplasia
  • Concurrent expression of p53DN and Ha-Ras induced urothelial hyperplasia but failed to accelerate tumour formaiton
  • Crossing activated Ha-ras transgenic with p53-/- mice to express activated Ha-ras in the absence of p53 results in early-onset bladder tumours (low-grade papillary or high-grade)
Term
CONCLUSIONS OF PREVIOUS EXPERIMENT
Definition

  • p53 deficiency predisposes the urothelium to hyperproliferation, but is insufficient for bladder tumorigenesis
  • Reduction in p53 dosage (eg, transgenic mice expression p53DN or heterozygous p53 knockouts) does not synergise with Ha-ras to induce bladder tumours; and
  • Complete loss of p53 is a prerequisite for collaborating with activated Ha-ras to promote bladder tumorigenesis

Term
Differences between man and mouse (4)
Definition

  1. Progressive telomere shortening limits the replicative potential of human tells
  2. Human ca cells must acquire capacity to maintain telomeres (ie, through telomerase activation)
  3. In the lab mouse, telomeres are 4-6x longer than humans and telomerase is expressed more widely
  4. In mouse tumorigenesis there is no selection pressure to acquire replicative potential

Term
Use of extablished ucc human cancer cells in mice
Definition

  1. Repapitulates original tumour behaviour in immunocompromised mice and 3d models
  2. Immortal
  3. uncloned - represents tumour biodiversity

Term

Use of extablished ucc human cancer cells in mice

BUT (5)

Definition

  1. Highly selective - minority of cancers 'take'
  2. Selective pressures from long-term adaptation to culture
  3. Have acquired multiple genetic changes
  4. May not be useful background to investigate candidate ca genes
  5. Beware of contamination (other cell lines, micoplasma spp.)

Term

Cross-contamination by cell-lines

  • Extensive contamination arose due to
  • Estimated __% of cell lines cross-contaminated
  • Why is this a problem? (4)
  • How to detect/eradicate problem?

Definition

  • Widely distributed between labs; poor practice and unawareness of problem; HeLa - robust cell line that competes out other cells in a mixed culture
  • 20%
  • 20% of publications use cross-cont. cell lines; flawed research and wasted funding;anthithesis of fundamental scientific principles; loss of scientific cred
  • Karyotyping, HLA typing, and isozyme profiling; Short-tandem-repeats analysis (PCR multiplex amplification of polymorphic loci and separation on a gell - unique profile obtained for that DNA sample source); Use product sizes to generate series of numbers as a barcode

Term

Mycoplasma spp

  • What is
  • Reported in __% of cell lines
  • spreads how

Definition

  • small, self-replicating prokaryote that lacks a cell wall and has the ability to cyto-absorb onto host cells
  • 15-35%
  • Spreads between cell lines, through media and reagents, or oporator droplet infection during culture

Term
How to test for mycoplasma spp
Definition

  • Microbiological culture
  • PCR
  • DNA staining for extrnuclear DNA (bis-benzimide)

Term
Effects of mycoplasma spp (6)
Definition

  1. Altered DNA, RNA, and protein synthesis
  2. Induction of chromosomes abberations
  3. Altered cell membrane composition
  4. Altered cell activation and cytokine expression
  5. Influence on signal transduction
  6. Altered growth characteristics

Term
How to prevent mycoplasma spp (4)
Definition

  1. Obtain cell cultures from reliable suppliers
  2. Good cell culture practice
  3. Use 0.2 micron filters
  4. Implement routine testing

Term

E-cadherin

  • Does what
  • Absent where
  • Inactivation of E-cadherin in NHU cells does what

Definition

  • Acts like a zipper to hold neighbouring cells together
  • Absent from most invasive cancers
  • Overexpressed chimeric protein; extracellular domain of MHC class I with transmembrane and intracellular domains of E-cadherin; LEADS to proliferation, migration, and invasion

Term

Experimental models (mouse vs. human)

  • Rodent systems provide...
  • Human systems...
  • Nl human cell models are useful because...

Definition

  • Rodent systems provide insight, but may not translate directly to man
  • Human systems: no single model appropriate for all cancers; incomplete understanding of nl biology
  • Nl human cell models are useful because: Insight into nl reg. pathways in tissue-specific background; role of specific pathways or genes in cancer

Term
Carcinomas
Definition
Majority of human tumours which arise from epithelial tissue
Term
Sarcomas
Definition
Arise from connective tissue or muscle cells
Term
Leukemias
Definition
Arise from haematopoietic cells
Term

Stochastic Model of Carcinogenesis

  • Def
  • Theory states that

Definition

  • Every cell within a tumour is potentially tumour-initiating
  • Theory states that it is impossible to predict which kind of cells will be T-IC

Term
Hierarchies of cells
Definition

  • Differentiated cells which no longer capable of division (cardiac muscle, neurons, short life span and continually replaced)
  • Proliferative cells (amplifying cells)
  • Stem cells (all adult tissue classically demonstrated in digestive tract, skin, blood; divide to produce daughter cells that either differentiate or remain as stem cells)

Term

Blood cell lineage

  • All bld cells develop from where
  • Immediately differentiated?

Definition

  • Pluripotent stem cell in the bone marrow
  • Precursors of differentiated cells undergo several rounds of cell division as they mature (transit amplifying cells); proliferation ceases at terminal stages of differentiation)

Term
Definition of a stem cell
Definition

  • A cell that has the ability to divide (self-replicate) for indefinite periods -- throughout lifetime of organism
  • Can differentiate to the many different cell types that make up the organism (under the right conditions or given the right signal)

Term

Amplifying cells

  • What are
  • Daughters committed to differentiation go through...

Definition

  • Stem cells in many tissues divide only rarely (disruption of quiesence leads to premature exhaustion of the stem cell pool; can cause haematological failure under stress conditions)
  • Gives rise to amplifying cells
  • Daughters committed to differentiation go through a limited series of rapid division
  • Each stem cell division gives rise to 8 terminally differentiated progeny

Term

Cancer stem cells

  • Are all cells equal in cancer?
  • __ tumour cells needed to initiate tumour growth
  • Clonogenic?
  • All cells are tumourigenic?

Definition

  • No!
  • 10^6 tumour cells needed to initiate tumour growth
  • Small subset of tumour cells are clonogenic, both in vitro and in vivo
  • Tumours are heterogeneous and only a rare sub-set of cells are tumourigenic
  • Model predicts that a distinct phenotype will be T-IC, whilst the bulk of the tumour will be non T-IC

Term
Cell of origin of cancer
Definition

Stem cells are long-lived cells; would require fewer mutations;quiescence

 

Early progenitors

Must acquire ability to self-renew

Term
Initiating mutation in prostate cancer
Definition

  • TMPRSS2:ERG is an initiating mutation in 60% of prostate cancers and is present in the stem cell population

Term
Initiating mutation in leukemic stem cell (foetal origin)
Definition
  • Twin studies: the initiating mutation (AML10ETO fusion) has a foetal origin and occurs in a single long-lived cell. Further work showed that this cell was a stem cell
  • Initiating mutation does not cause leukaemia outright but is present in foetal blood
  • Dx of leukemia: 2-10 years after initiating mutation
  • Patients in remission are AM1-ETO+
Term
Initiating mutations -- 2 examples
Definition
Prostate cancer and Leukemia
Term
Seeing cancer cells how?
Definition
Flow cytometry and magnetic bead cell sorting
Term

Page 54 - Cell sort and test function

Page 55 - Knock-out/knock-in mouse colon cancer

Definition
Term
Why are stem cells resistant to conventional treatment (5)
Definition

  1. Quiescence (most cytotoxic drugs target proliferative cells; stem cells are insensitive to drug)
  2. Target not expressed
  3. Radioresistance (activation of DNA damage response)
  4. ABC transporters (efflux drugs)
  5. Express anti-apoptotic genes (bcl-2)

Term

Androgen response hormonal therapy

  • Treatment in prostate cancer

Definition

  • Hormonal therapy has been used for treatment of advanced prostate cancer
  • ~80% of prostate cancers initially respond to hormonal therapy; more than half of the responders gradually become resistant to this therapy
  • Androgen-responsive to androgen-unresponsive state
  • ***Prostate CSCs do not express the androgen receptor***

Term
Large scale genome analysis projects
Definition

  • Cancer Genome Project: (Cancer Gene Census; COSMIC; CGP Cancer Cell Line Project; CGP Copy Number Analysis in Cancer)
  • Cancer Genome Anatomy Project: (SAGE; Chromosome analysis)

Term
Properties of a cancer stem cell
Definition

  1. Potential to initiate tumours in vivo
  2. Self-renewel
  3. Capacity to differentiate into phenotypes typical of pt's tumour
  4. Quienscence/slow-cycling

Term
Experimental models in cancer research
Definition

  1. Established cancer cell lines
  2. Carcinogen treated animals
  3. Xenogenic transplantation (subq)
  4. Transgenic mice (genetic modification of normal cells in vivo)

Term

Advantages and Disadvantages of:

 Established ca cell lines

Definition

Adv: Retains characteristics of originating tumour

 

Dis: Genotypic/phenotypic drift due to long-term adaptation to culture

Term

Advantages and Disadvantages of:

 Carcinogen treated animals

Definition

Adv: Provides info in initiation/promotion stages of cancer development

 

Dis: Neoplastic transformation pathways in animals are not directly relevant to man

Term

Advantages and Disadvantages of:

 Xenogenic transplantation (e.g., subq)

Definition

Adv: may provide additional info over cell culture as forms 3D tumour in an in vivo environment eg, angiogenesis

 

Dis: Host interactions may not be relevant -- cross-species, tissue specific

Term

Advantages and Disadvantages of:

Transgenic mice

Definition

Adv: Investigate specific tumour development eg, by combining tissue-specific promoter with cancer-predisposing genetic modification

 

Dis: Neoplastic transformation pathways in animals are not directly relevant to man

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