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Campbell Biology Chapter 25
Phylogeny and Systematics
37
Biology
Undergraduate 2
02/23/2008

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Term
Fossil Record
Definition
The chronicle of evolution over millions of years of geologic time engraved in the order in which fossils appear in rock strata.
Term
Homology
Definition
Similarity in various species that arose due to common ancestry.
Term
Analogy
Definition
Similarity in various species due to convergent evolution (coincidental rather than genetic).
Term
Homoplasies
Definition
Analagous structures in different species that evolved independently.
Term
Taxonomy
Definition
An ordered division of organisms into categories based on a set of characteristics used to assess similarities and differences.
Term
Bionomial
Definition
Two-part format of the scientific name of organisms; genus and species.
Term
Genus
Definition
A taxonomic category above the species level, designated by the first word of a species′ two–part scientific name.
Term
Specific Epithet
Definition
The second part of a binomial, referring to one species within a genus.
Term
Family
Definition
In classification, the taxonomic category above genus and below order.
Term
Order
Definition
In classification, the taxonomic category above family and below class.
Term
Class
Definition
In classification, the taxonomic category above order and below phylum.
Term
Phylum
Definition
In classification, the taxonomic category above class and below kingdom.
Term
Kingdom
Definition
In classification, the taxonomic category above phylum and below domain.
Term
Domain
Definition
In classification, the highest taxonomic rank; contains Archae, Bacteria and Eukarya.
Term
Taxon
Definition
The named taxonomic unit at any given level of classification.
Term
Phyologenetic Tree
Definition
A branching diagram that represents a hypothesis about evolutionary relationships.
Term
Dichotomy
Definition
Two-way branch point on a phylogenetic tree.
Term
Cladogram
Definition
A diagram depicting patterns of shared characteristics in organisms.
Term
Clade
Definition
A group of species that includes an ancestral species and all its descendants.
Term
Cladistics
Definition
The analysis of how species may be grouped into clades.
Term
Monophyletic Grouping
Definition
A valid clade that consists of the ancestor species and all its descendents.
Term
Paraphyletic Grouping
Definition
Incomplete cladistic grouping that consists of an ancestral species and some, but not all, of the descendents.
Term
Polyphyletic Grouping
Definition
Incomplete cladistic grouping of several species that lack a common ancestor.
Term
Share Primitive Character
Definition
A character that is shared beyond the taxon defined; ex) the backbone common to all vertebrates cannot distinguish mammals from birds, reptiles, etc.
Term
Shared Derived Character
Definition
An evolutionary novelty unique to a particular clade; ex) hair distinguishes mammals from all other vertebrates.
Term
Outgroup
Definition
A species or group of species that is closely related to the group of species being studied, but clearly not as closely related as any study-group members are to each other; used as a basis of comparison.
Term
Ingroup
Definition
The group of taxa that is being analyzed in a cladistic study of evolutionary relationships.
Term
Phylogram
Definition
A phylogenetic tree in which the lengths of the branches reflect the number of genetic changes that have taken place in a particular DNA or RNA sequence in the various lineages.
Term
Ultrametric Tree
Definition
A phylogenetic tree in which the lengths of the branches reflect measurements of geological time.
Term
Maximum Parsimony
Definition
A principle that states that when considering multiple explanations for an observation, one should first investigate the simplest explanation that is consisten with the facts.
Term
Maximum Likelihood
Definition
A principle that states that when considering multiple phylogenetic hypotheses, one should take into account the one that reflects the most likely sequence of evolutionary events, given certain rules about how DNA changes over time.
Term
Orthologous Genes
Definition
Homologous genes that are passed in a straight line from one generation to the next, but have ended up in different gene pools because of speciation; Ex) β hemoglobin genes in humans and in mice.
Term
Paralogous Genes
Definition
Homologous genes that are found in the same genome due to gene duplication
Term
Molecular Clock
Definition
A yardstick for measuring the absolute time of evolutionary change based on the observation that some genes and other regions of genomes appear to evolve at constant rates.
Term
Neutral Theory
Definition
Much evolutionary change in genes and proteins has no effect on fitness and therefore is not influenced by Darwinian selection (it neither makes an organism stronger nor weaker).
Term
Horizontal Gene Transfer
Definition
Genes are transferred from one genome to another through mechanisms such as transposable elements, and perhaps through fusions of different organisms.
Term
Convergent Evolution
Definition
The emergence of biological structures or species that exhibit similar function and appearance but that evolved through widely divergent evolutionary pathways.
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