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BS111 Final Exam
Chapter 18
50
Biology
Undergraduate 2
05/06/2009

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Term
Lac Operon
Definition
normally off, inducible
Term
Operon
Definition
specific genes + promoter + operator
Term
Trp Operon
Definition
normally on, repressible
Term
Lac Operon (+lactose)
Definition
allalactose binds repressor
RNA Polymerase binds promoter
LacZ, LacY, LacA transcribed (1 mRNA)
Term
Lac Operon (-lactose)
Definition
repressor binds operator
RNA Polymerase unable to bind promoter
transcription blocked
Term
Trp Operon (-trp lvls)
Definition
repressor protein unable to bind operator
trp synthesized
Term
Trp Operon (+trp lvls)
Definition
repressor binds operator (operator off)
no transcription
no trp synthesis
Term
high glucose levels
Definition
low cAMP
no CAP binding
weak transcription
Term
low glucose levels
Definition
high cAMP
CAP binds
strong transcription
Term
lactose only
Definition
repressor NOT bound
transcription high (CAP bound)
Term
glucose only
Definition
repressor IS bound
no transcription
Term
glucose + lactose
Definition
repressor NOT bound
CAP NOT bound
low transcription levels
Term
operator is mutated
Definition
repressor never binds
Term
repressor is mutated
Definition
can't bind
Term
genes are mutated
Definition
B-gal
can't eat lactose
Term
what does nuclear membrane do?
Definition
in eukaryotes
prevents simultaneous transcription and translation
Term
major point of regulation in prokaryotes
Definition
control of transcriptional initiation
Term
what controls transcription?
Definition
contortions or bending of DNA
(from proteins binding to DNA)
Term
RNA Polymerase I
Definition
rRNA (genes exist in tandem repeats)
Term
RNA Polymerase II
Definition
mRNA
protein encoding
homologous to prokaryotes
Term
Polymerase III
Definition
tRNA
transcribes small RNA genes
Term
Core Promoter
Definition
includes:
initiation site
TATA box
Term
Cis-acting regulatory genes recognized by pol II
Definition
core promoter
enhancer
Term
initiation site
Definition
1)where transcription begins
2)located +1 of transcription
Term
Enhancer
Definition
activator proteins bind
Term
Basal factors
1)bind where?
2)do what?
Definition
bind to promoter
maintain basal level of transcription
Term
TBP
1)where?
2)do what?
Definition
binds to TATA box
bends DNA
Term
TFs
1) where?
2) do what?
Definition
1)associate at TBP
2)stabalize
Term
N-terminal tails
Definition
stick out of nucleosome core
Term
Histone tails can be modified by
Definition
phosphate
acetyl group
methyl group
ubiquitin
Term
nucleosomes
1) do what? where?
2)what releases impairment?
Definition
1)impair assembly of transcriptional machinery at core promoter.
2)Acetylation releases this impairment.
Term
Acetylation
Definition
decreases strength of DNA-histone interaction
Term
transcriptional activators
Definition
bind to enhancer sequences
increase transcription 100-fold
Term
transcriptional activators 2 important structural domains
Definition
bind to enhancer
activate transcription
Term
dimers
1)form what?
2)types?
Definition
1)formed by eukaryotic activators
2)homomers
heteromers
Term
transcriptional repressors
1)do what?
Definition
1)bind to enhancer element (competitive)
blocks polymerase
diminish transcription
Term
Alternative RNA splicing
Definition
-produce different mRNA molecules from same transcript
-depends on splicing pattern
-controlled by cell-specific regulatory proteins (bind to regulatory sequences)
Term
rate of mRNA degradation
Definition
can control protein synthesis within cell
Term
mRNA degradation
Definition
-via breakdown of poly-A tail (3')
-this triggers removal of 5' cap
Term
what happens when cap is removed?
Definition
RNA quickly degraded by nuclease enzymes
Term
How can initiation of translation be blocked?
Definition
-regulatory proteins
-bind to specific sequences in UTR of 5'
-prevents ribosomes from attaching
Term
What happens when mRNA lacks poly-A tail of sufficient length?
Definition
translation stopped
Term
Ubiquitin
Definition
-tags proteins for destruction
proteasomes recognize tagged proteins & degrade them
Term
miRNA
1) single stranded or double stranded?
2) bind to?
Definition
1) single stranded
2) complementary sequences in mRNA
Term
miRNA
formed from?
Definition
longer RNA molecules fold back
create hairpin structure held together by hydrogen bonds
Term
hairpin strands
Definition
one degraded
other = miRNA
Term
miRNA
final result
Definition
-one hairpin structure forms complex with several proteins
-complex binds to complementary RNA molecule
!-degrades target RNA or blocks translation
Term
oncogenes
Definition
cancer causing genes
Term
proto-oncogenes
Definition
-normal versions of oncogenes
-code for proteins that stimulate normal cell growth and division (apoptosis as well)
Term
oncogene arises from
Definition
genetic change
leads to increse of protein product or increased activity
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