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Biotechnology Lab Methods 312
safety, statistics
117
Biology
Undergraduate 1
05/15/2013

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Term
What is a biohazard?
Definition
A biological agent with the potential to produce harmful effects in humans
Term
what are biological agents?
Definition
Viruses, bacteria, fungi (molds and yeasts)
Term
What is pathogenicity?
Definition
Ability of an organism to cause disease in humans
Term
What are LAI's?
Definition
Laboratory aquired infections
Term
What are laboratory acquired infections?
Definition
Infections caused by laboratory organisms
Term
what is bioaerosol?
Definition
very small particles or droplets that contain bio agents in the air
Term
What creates bioaerosol?
Definition
mixing and pouring liquids,
pipetting lilquids,
centrifuging cultures,
inserting a hot loop into a bacterial culture
Term
What does CDC stand for?
Definition
Center for disease control
Term
What does the cdc do?
Definition
health and human cervices
prevention and control of disease, injury and disability
Term
what is the NIH?
Definition
National institues of health
Term
What does the NIH do?
Definition
Federal funding for biomedical research
provices guidelines for lab safety.
Term
What are some biohazardous microorganisms?
Definition
Bacteria, fungi protozoan parasites and viruses
Term
What is mycosis?
Definition
disease caused by molds
Term
what are mycotoxins?
Definition
toxic fungal products
Term
what are viruses?
Definition
small
contains rna or dna surrounded by protein coat
easy to aerosol
HPV, HIV, HBV,
Term
what is oncogenic mean?
Definition
tumor inducing
Term
What are overal biosafety themes?
Definition
Personal protective equipment or PPE
Containment conrol of biohazards by isolation
Term
what is containment?
Definition
control of biohazards by isolation and separating from humans.
Term
What are universal precautions?
Definition
standard safety practices for handling human blood products
Term
what is aseptic technique?
Definition
practice that minimize risk of contamination
Term
What are bio-safety levels?
Definition
level of the biocontainment precautions required to isolate dangerous biological agents in an enclosed facility
Term
what is bsl 1?
Definition
Well classified organisms that DO NOT cause disease
Term
what is bsl 2?
Definition
organisms that may cause disease that is MILD OR TREATABLE
Term
BSL 3?
Definition
Serious or lethal disease causing organisms
Term
BSL 4?
Definition
High risk of life threatening disease!!!!!
Term
What is the difference between BSL and BSC?
Definition
BSL is biosafety level and BSC is biological safety cabinet
Term
What are BSC good for?
Definition
Containment for aerosols
separate material from operator and lab
enclosed CLEAN air envioronment
Term
What is a HEPA?
Definition
High efficienty particualate air,
higly pleated glass and paper fibers
Term
what do hepa filters do?
Definition
REMOVE PARTICLES .3uM or larger
Term
What is a laminar flow cabinet?
Definition
lab hood with sterile directed air flow
Term
What is a clean bench?
Definition
Horizonal laminar flow HOOD
provides sterile work surface but NOT worker protection

NO WORKER PROTECTION!!!!!
Term
What best describes a laminar flow hood?
Definition
Sterile work surface, but NO WORKER PROTECTION!!!!
Term
wHAT IS A CLASS 1 bsc?
Definition
Reduces aerosol escape
DOES NOT MAINTAIN WORK SURFACE STERILITY!!!!!
Term
wHAT IS A CLASS 2 BSC
Definition
Reduces aerosol excape
MAINTAINS surface sterility
Term
What is the most common bsc???
Definition
CLASS 2 in biot labs
Term
what is a class iii bsc?
Definition
Glove box
TOTAL CONTAINMENT
EXTREMELY BIOHARARDOUS AGENTS
Term
what is a disinfectnat?
Definition
chemicals that kill microorganims!!!
Term
What is disinfection
Definition
removal of all pathogens from surface
Term
what is sanitization?
Definition
general reduction fo pathogens
Term
what is sterilization?
Definition
killing ALL organisms on a surface=disinfection
Term
What is central tendencyh?
Definition
description of center of data set
Term
what is measures of dispersion?
Definition
how much vales in a data set vary
Term
what is range?
Definition
difference between highest and lowest value
Term
what is deviation?
Definition
distance of a data point from the mean
Term
what are two ways to meaure deviation/
Definition
variance and standard deviation
Term
what is the man?
Definition
sum of all values divided by number=AVERAGE
Term
what is the median?
Definition
middle value of data halfway between highest and lowest value
Term
what is the mode?
Definition
value that occurs most frequently!!!!
Term
what is variance?
Definition
sum of deviations divided by n-1

=E (x-`x)^2 divided by (n-1)
Term
what is standard deviation?
Definition
square root of (the sum from mean divided by n-1)
Term
what reduces variability?
Definition
determine amount present
Term
what reduces variability?
Definition
examine proces for malfunctions or problems
determine certainty of a measurement result in the presence of variability
Term
what is an outlier?
Definition
a measurement that has much higher or much lower value then rest of data
Term
what are standards?
Definition
represents unit of measure
Term
what are primary standards
Definition
accepted without verification
Term
what are secondary standards
Definition
based up measurements from primary st
Term
what are worknig standards?
Definition
standards used in individual labs based on sec stand
Term
what is iso stant for?
Definition
international organization for standardization
Term
What is ANSI?
Definition
American national standards institute
Term
what is NIST?
Definition
National institute for standads and technology
Term
ASTM?
Definition
american society for testinga nd materials
Term
what is calibration?
Definition
adjustment of meas system to be in accordance with standard
Term
what is tolerance?
Definition
error that can be tolerated in calibration
Term
what is verification?
Definition
a check on performance of instrument
Term
what is traceability?
Definition
chane of calibrations to establish value of standard
Term
what is error?
Definition
diffence between measured value and true value
Term
what is gross error?
Definition
huge errors caused by blunders!!!
Term
what is systematic error?
Definition
bias measurements that tend to be higher or lower than true value.
Term
systematic errors are
Definition
using fthings for measurements that vary from others
Term
systmatic error
Definition
environmental condition that alter results

rosponst of intruments drift over time.
Term
what is random error?
Definition
variation by chance but overall average to correct or expected value.
Term
what is absolute error calc?
Definition
true value minus average measured value
Term
what is percent error?
Definition
true minus average divided by true times 100%
Term
what is accuracy?
Definition
systematic error. measure how close data is to true value
Term
what is precision?
Definition
random errors.
consistency of series of tests
Term
what is repeatability?
Definition
measurements made under uniform conditions and their precision
measure 100ul 1000 times.
Term
reproduceability
Definition
precision made under two different laboratories
Term
what is inaccuracy?
Definition
combination of all random and systemic error that effect results
Term
imprecision
Definition
effects of ONLY RANDOM ERROR
Term
HOW TO DETERMINE PRECISION?
Definition
range sd and cv which is sd100 dividing by mean
Term
sig figs for add sub
Definition
no more numbers right of decimal than least number of places.
Term
sig fig for x or d
Definition
keep lowest sig figs
Term
balances
Definition
mechanical and electronic
Term
mechanical bal
Definition
beams and wights
object placed on pan attached to beam and balanced on standard
Term
electronic balance
Definition
electromagnetic force
Term
what affects balances?
Definition
air currents
temperature
static charge
Term
what is range?
Definition
least to highest wight that can be measure
Term
capacity?
Definition
how much highest that can be weighed
Term
sensitivity or radability?
Definition
smallest unit taht can be measured.
Term
Linearity
Definition
broad range accuracy how far can it measure up and down.
Term
what is TC?
Definition
to contain
Term
what id TD
Definition
To deliver
Term
what is serological pipette?
Definition
must be blown out to deliver full volume
Term
what is mohr pipette
Definition
tip is not part of measurement
Term
pipette aid
Definition
measuring assistant devices
Term
what is volumetric pipette?
Definition
measures only one volume usually
Term
positive displacement?
Definition
using syringe
Term
air displacement
Definition
air cushion no touch pip to sample
Term
what is reverse mode pipetting?
Definition
depress to second stop to take up sample
release plunger
depress plunger to first stop
tip is discarded
measure of volatile liquids and viscous samples.
Term
what are aerosols?
Definition
fine liquid droplets that remain supended in the AIR
Term
carryover
Definition
contamination from sample 1 to another
Term
how to minimize contamination?
Definition
tips with filter
dedication of pipet
proper operaton
Term
light transmitted
Definition
light passes through without interaction
Term
light reflected
Definition
change in direction
Term
light scatted
Definition
deflected light
Term
light absorbed
Definition
light energy taken up by material
Term
specphometer
Definition
measures light efect on sample
Term
wavelenght
Definition
distance from crest to crst of each wave.
Term
transmittance
Definition
light through sample divided by light through blank
Term
percent T
Definition
transmittance smaple over blank times 100
Term
absorbance
Definition
optical density
-logt or 2-log percent T
Term
what is beers law
Definition
absorbance of light is directly prioportional to concentation
Term
what is chromatography used for?
Definition
protein purification
Term
types of chromatography
Definition
size exclusion, ion, hydrophics
Term
binding stage
Definition
bacterial lysate to matricx in high salt buffer
Term
wash stage
Definition
less hydrophobs leave column in medium salt buffer
Term
elution
Definition
gfp is eluted from column with low salt buffer
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