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Biolology Lab Practical
Lab Practical
140
Biology
Undergraduate 2
12/13/2011

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Term
Independent variable
Definition
the sleep deprived vs the enough sleep
the variable that you can choose and manipulate and usually effects the dependent variable
Term
dependent variable
Definition
the heart rate, one variable will be measure, counted, observed and changing in responce to the experimental conditions in the end of testing
Term
constant variable
Definition
is the rate of speed carried thru the test of going up and down the stairs, the variable that is kept constant throught the experiment
Term
scientific investigation lab
Definition
measure of a persons cardio vascular fitness may be a corolation of the amount of sleep a person gets, the conclusion did not contribute to the results
Term
controlled experiment
Definition
keeps all enviornemtal variable constant
Term
phenol red (pH lab)
Definition
the compound is disloved in water hydrogen ions are relseased, and the pH of the soltion is low, also the indicator for the acidity of the HCl acid, red when the solution is basic and yellow when the solution is acidic
Term
in the pH and buffer experiment what indicator did we use?
Definition
red cabbage
Term
in the pH and bufferes experiemnt what is the independent variable
Definition
the buffers
Term
in the pH and buffers lab what is the dependent variable
Definition
the pH and the color (indication of acididy or basic solutions)
Term
in the pH and buffers lab what is the controlled variable
Definition
distilled water
Term
What were you testing for in the Benedict's Test?
Definition
Reducing Sugars
Term
What was the positive reaction to reducing sugars in the benedict's test?
Definition
Orange(very positive)
Term
What was the negative reaction for reducing sugars in the benedict's test?
Definition
Blue and green for very little amount of reducing sugars
Term
What is Benedict's Regeant?
Definition
Cupric Ions(blue) that change to Cuprous Oxide(green to orange) in the presence of reducing sugars
Term
What are monosaccharides?
Definition
Simple Sugars, example of this are carbohydrates
Term
What are disaccharides?
Definition
Double sugars, example is sucrose
Term
What are polysaccharides?
Definition
Linkage of three or more monosaccharides, example is starch, glycogen, or cellulose
Term
What is the positive control of the benedict's test?
Definition
Reducing Sugar Solution is the positive control in the experiment. A postive control is the variable for which you are testing. It reacts positively and demonstrates the ability for which you detect.
Term
What are polysaccharides?
Definition
Linkage of three or more monosaccharides, example is starch, glycogen, or cellulose
Term
What is the positive control of the benedict's test?
Definition
Reducing Sugar Solution is the positive control in the experiment. A postive control is the variable for which you are testing. It reacts positively and demonstrates the ability for which you detect.
Term
What is the negative control in the benedict's test?
Definition
the negative control does not contain the variable for which you are testing , it contains only the solvent(often distilled water with no solute) and it does not react. Negative control is the distilled water.
Term
What are reducing sugars?
Definition
They possess free aldehyde or ketone groups that reduce weak oxidizing agents such as copper in the benedicts regeant. example of these are glucose and fructose.
Term
What was the overall conclusion of benedicts test?
Definition
Onions store more sugar than potatoes, while potatoes store sugar as starch. Onions contain more reducing sugars.
Term
What did the Iodine Test look for ?
Definition
Starch
Term
What is the postive and negative reaction for the iodine test for starch?
Definition
Positive- bluish black, negative- yellowish brown
Term
In Iodine test for starch, what did we use to find the negative and positive reactions?
Definition
We used iodine potassium iodide which distinguishes from monosaccharides, disaccharides, and other polysaccharides.
Term
What is starch?
Definition
It is a coiled polymer of glucose;iodine interacts with these coiled molecules and becomes bluish black. Iodine doesnt react with carbohydrates that are not coiled and remains yellowish brown.
Term
What is the positive and negative control for the iodine test?
Definition
positive control is starch solution and negative control is distilled water
Term
Overall conclusion for the Iodine test for starch?
Definition
Potatoes color is more intense than onion juice, which means that potatoes are good for storing starch,while onions arent.
Term
What does the biuret test look for?
Definition
Proteins
Term
What are proteins?
Definition
They are made of amino acids, each of which has an amino group, a carboxyl group, and a variable side chain.
Term
What is a peptide bond?
Definition
It forms between the amino group of one amino acid and the carboxyl group of an adjacent amino acid.
Term
What is Biuret Regeant?
Definition
1% of Copper sulfate(CuSO4)
Term
What is the positive and negative test for the presence of a protein in the Biuret tesT?
Definition
Positive is a violet color while negative is blue
Term
What is the positive control and negative control for the biuret test?
Definition
Positive control-protein solution, negative control-water
Term
Overall conclusion for Biuret test?
Definition
Egg albumen contains more protein than honey and we can tell because egg albumen contains a violet purplish color while honey has lots of sugar, very little protein. Free amino acids do not have peptide bonds.
Term
What was the purpose of this enzyme lab?
Definition
To understand the activity of two enzymes (catechol oxidase and amylase)
Term
What is catechol oxidase?
Definition
An enzyme that stimulates the reaction between catechol and oxygen to produce a chemical compound called benzoquinone.
Term
What is benzoquinone?
Definition
The chemical that is responzible for the browning of fruits when exposed to oxygen.
Term
What is amylase?
Definition
An enzyme found in saliva that breaks down starch into sugar
Term
What is an inhibitor?
Definition
A specific chemcical that inhibits (stops) enzyme activity
Term
In the enzyme lab, we are investigating the inhibition of enzyme activity using a specific inhibitor called... DUN DUN DUN
Definition
phenylthiourea(ptu)
Term
If an enzyme solution is saturated with substrate, the most effective way to obtain even faster yield of product is to ...
Definition
add more of the enzyme
Term
What is the difference between a competitive and noncompetitive inhibitor?
Definition
Comp. Inh: attached directly to the active site
NonComp.Inh: attaches elsewhere on enzyme
Term
How can I tell if inhibitor(ptu) is comp. or noncompetitive?
Definition
comp. inhibitor can be reversed if i add more substrate.
and the non.comp.inhibitor cannot be reversed if you add more substrate.
Term
What are enzymes?
Definition
Biological catalysts, compunds that speed up a chemical reaction with out being used up or altered in the reaction
Term
what is a substrate
Definition
the material which the catalyst reacts and is modified durring the reaction to form a new product
Term
what is an active site
Definition
a place on an enzyme that substrates will bind forming a enzyme-substrate complex and undergo a cemical reaction
Term
what is an enzyme-substrate complex
Definition
it is here that catalysis take place, and when it is complete the complex disassociates into enzyme and product
Term
what are activators
Definition
chemicals that must bind for the emzyme to be active
Term
what are cofactors
Definition
nonprotein substances that usually bind to the active site on the enzyme and are essential for the enzyme to function
Term
what are coenzymes
Definition
organic cofactors
Term
what are the two ways to measure the emzyme activity
Definition
1) determine the rate of dissapearance of a substrate 2) determine the rate of appearance of the product
Term
what happens durring the activity of catechol oxidase in tghe enzyme lab
Definition
catechol oxidase
catechol + O2 -----------------> benzoquinone + H2O
Term
what is the conclusion of the inhibtion action of catechol oxidase
Definition
PTU inhibited the enzymatic activity of catechol oxidase and was found to be the non competitive inhibitor
Term
what indicates the presence of starch in the influence of concentration, pH and temperature on the activity of amylase?
Definition
turns a dark purple color when treated wikth a solution on I2KI, the solution is normally an yellow amber color
Term
Enzyme concentration procedure/ conclusion
Definition
we added increasing amounts of amylyse in each of the four test tubes and added an enzyme and observed the rate of reaction, the lower levels of amalyze the longer it took to break down the starch
Term
what is the depenedent and independent variable of the influence of concentration of amaylase lab
Definition
independent- the amount of amaylase
dependent- time it took to break down the starch
Term
WHat do we test for in the "effect of pH on amylase activity"
Definition
We are determining the optimum pH for the activity of amylase.
Term
Conclusion of the effect of pH on amylase activity?
Definition
AMylase is the most active at 6-7 pH . We lose activity as we increase the PH because enzymes de-activate at low and high temperatures. More ezymes, the faster the reaction will occur ! yippe!
Term
Conclusion of the temp. of on activity of amylase
Definition
High and low temps. denature the enzyme, therefore avoiding the reaction to occur. dependent variable is temp. and independent is the time of the starch dissapearance.
Term
What are prokaryotic cells
Definition
the earliest known cells found in fossilized sediments. They lack nuclei and membrane bound organelles.
Term
What are eukaryotic cells?
Definition
Cells with a membrane bound nucleus and organelles.
Term
What does compound mean?
Definition
Scopes have a minimum of 2 magnifying lenses
Term
What is the head of a microscope?
Definition
The head supports the two sets of magnifying lenses
Term
What is the ocular?
Definition
The lens and the eyepiece
Term
What is the interpupillary distance?
Definition
The distance between eyepieces
Term
What is a field of view?
Definition
a circle of light that one sees in the microscope
Term
What are objectives?
Definition
3 lenses on the revolving nosepiece
Term
What is a scanning lens?
Definition
The shortest lense - typically 4x
Term
What is intermediate lens?
Definition
The middle lens - 10x magnification
Term
What is the high power lens?
Definition
The longest lens - 40x magnification
Term
What is the arm?
Definition
It supports the stage and condensor lens
Term
What is a condensor lens?
Definition
It is used to focus the light from the lamp through the specimen to be viewed.
Term
What is the adjustment knob?
Definition
It controls the condenser
Term
What is the iris diaphragm?
Definition
Control the width of the circle of light?
Term
What does the stage do?
Definition
It supports the specimen to be viewed
Term
What is the stage adjustment knob?
Definition
it adjusts the stage (duh)
Term
What are aggregates?
Definition
Cluster(fuck)s of cells
Term
What are colonies?
Definition
clusters composed of consisten numbers of cells
Term
What are multicellular organisms?
Definition
Organisms that have large numbers of cells with specialized structures and functions
Term
What are multicellular organisms?
Definition
Organisms that have large numbers of cells with specialized structures and functions
Term
Be able to recognize and observe the following ....
Definition
amoeba, trichonympha (termite intestines), protococcus (green algae from tree bark), scenedesmus (aquatic algae), volvox, elodia (freshwater aquatic plant), and human epithelial cells
Term
What are genes?
Definition
discrete units of hereditary info consisting of DNA
Term
What is mitosis?
Definition
nuclear division into 2 daughter nuclei w/the same # of chromosomes and same genes as a parent cell
Term
What is meiosis?
Definition
Nuclear division in preperation for sexual reproduction?
Term
What is cytokinesis?
Definition
Division of cytoplasm - in animal cells undergoes cleavage furrow, in plant cells forms cell plate
Term
What is cytokinesis?
Definition
Division of cytoplasm - in animal cells undergoes cleavage furrow, in plant cells forms cell plate
Term
What is a cell cycle?
Definition
Events from the beginning of one cell cycle to the beginning of the next
Term
What is a diploid cell?
Definition
Cells which contain 2 sets of chromosomes
Term
What is a haploid cell?
Definition
Cells which contain a single set of chromosomes
Term
What is a nuclear envelope?
Definition
It surrounds the nucleus
Term
In the microscope lab, we examined all except which type of organism ....
Definition
virus
Term
What is chromatin?
Definition
Mass of DNA and protein in an uncoiled state
Term
What is interphase?
Definition
the resting phase between successful miotic division of a cell; between 1st and 2nd division of a cell
Term
What is interphase?
Definition
the resting phase between successful miotic division of a cell; between 1st and 2nd division of a cell
Term
What does it mean if a person has 47 chromosomes?
Definition
That person has trisomy 21, down syndrome
Term
In G1, are chromosomes single or double stranded?
Definition
Double stranded
Term
What is an aster?
Definition
an array of microtubules surrounding a centriole pair at the spindle poles
Term
What is a centriole?
Definition
small dots seen at the poles around which the microtubules of the spindle and asters appear to radiate
Term
What is a centromere?
Definition
the point on a chromosome by which it is attached to a spindle fiber during cell division
Term
What is a spindle?
Definition
A collection of minute fibers prominant during cell division
Term
What are homologous chromosomes?
Definition
Chromosome pairs of the same gene sequence, length, centromere position and staining pattern
Term
What is a testcross?
Definition
It is used in order to find an unknown genotype. We breed an unknown genotype with a homozygous individual
Term
what is a gene?
Definition
a hereditary unit of genetic info - consists of DNA
Term
What is chiasmata?
Definition
The point of overlap of paired chromatids at which fusion and exchange of genetic material take place during prophase of meiosis
Term
photosynthesis chemical equation
Definition
6Co2 +6H2O----> C6H12O6 + 6O2
Term
photosynthesis conclusion
Definition
the leaf that was grown in light for 5 days showed the possitive test for starch which we concluded that it was having photosythesis activity. Cateroids are present in plant chloroplasts and contribute to pigment
Term
the compound used to test for starch in the photosynthesis lab
Definition
I2KI
Term
Polar molecules
Definition
substances that disolve or are attracted to polar molecules
Term
nonpolar molecules
Definition
attracted to nonpolar molecules to varyng degrees
Term
what is the purpose of the PCR lab?
Definition
the purpose of this experiment is to determine the connection between a certain gene, and an individuals ability to taste the bitter tasting cmpound PTC.
Term
how do we determain an individuals genotype for the PTC trait?
Definition
by increasing the amount of DNA, and running a polymrase chain reaction(PCR)
Term
how does th PCR reaction method work?
Definition
polymrase chain reacting synthesis DNA using a template strand, amplifying the DNA. since PCR requires DNA polymrase and primer, specific fragments of DNA sequence can be amplyfied, making it easier for scientists to study them.
Term
what are SNPs?
Definition
they are single nucleotide polymorphisms, the most common type of genetic variation among people.
Term
what was the usefulness of the PCR experiment?
Definition
amplyfiying PCR has made way for findiong SNPs within a population.
Term
The first step in the PCR experiment was to isolate the DNA. How did we do this?
Definition
First we collected cheek cells, centrifuged them, mixed them with CHelax, boiled to denature which made it easier to seperate DNA from macromolecules, then we centrifuged and iced for a few days,
Term
The next method in the PCR experiment was to amplify the DNA. How did we accomplish this?
Definition
In order to grow DNA, we added PCR to the cheek cells to amplify DNA found in the cells
Term
In the PCR experiment, what was HaeIII?
Definition
HaeIII was a restriction enzyme, an enzyme that cuts DNA molecules into fragments that can be stained and visualized
Term
in the PCR lab what was th purpose of gel electrophoresis machine?
Definition
the purpose is to seprate particles based on thier charges. It is attached to an electrical source and one side is positive and the other is negative.
Term
Gel electrophoresis
Definition
Separate particles based on their charges
(2% agarose gel and buffer)
Term
Buffer
Definition
Solution that conducts electricitiy
Term
Chelex
Definition
Substance that keeps DNAses from cutting through the DNA during the boiling of the cells we added
Term
Purpose of boiling of cells
Definition
Denature the DNA, making it easier for the DNA to be separated from the other macromolecules
Term
HaeIII
Definition
Restriction enzyme that cuts DNA molecules at GGCC
Term
PTC Paper
Definition
How the results were tested.
Individual who were found to have heterozygous or homozygous dominant alleles were asked to taste the paper and see if they can taste PTC
Term
Results of the PCR lab
Definition
D with one band: homozygous recessive (the allele is not present so nothing will be cut)
D with 2 bands:homozygous dominant (HaeIII cuts through the PCR products into 2 sets of fragments because D with 3 bands: heterozygous ( have 2 different alleles and haeIII cuts through allele)
Term
pARA-R/LB/AMP
Definition
Plasmid that contains a fluorescent red protein gene originally isolated form a sea anemone
Simple sugar suppose to increase growth
(express PGLO)
Term
AMP/LB
Definition
Ampicillin/ Antibacterial
Inhibits bacterial growth
Term
LB
Definition
Bacterial food
Growth on both sides
Term
what does PCR stand for
Definition
polymerase chain reactioln
Term
why do we preform PCR
Definition
to amplify a known segment of template DNA
Term
the enzyme that acts as a DNA polymerase in the PCR lab is
Definition
TAQ
Term
the name of the chemical that we used to detect the TAS2R38 gene is called
Definition
a restriction enzyme HaeIII
Term
a plasmid is
Definition
a small peice of extra chromosomal DNA in bacteria
Term
in the transformation lab we used plasmids to
Definition
carry particular genes into bacterial cells
Term
the genes expressed in the transformation lab
Definition
ARA GLO
Term
genome
Definition
a set of all the genes nessisary to specify an organsms complete list of characteristics
Term
sex linked
Definition
a gene located on one of the sex determining chromososmes, most generally on the x- chromosome
Term
results of the transformation lab showed
Definition
Red E. coli colinies in the LB/AMP/ARA-plate
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