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Biology
Final
56
Biology
Undergraduate 2
12/12/2010

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Term
Helicase
Definition
Separates double stranded DNA into single strands at "point of replication"
Term
SSBP's
Definition
Keeps DNA strands apart after separation
Term
Primase
Definition
Primes single stranded DNA after separation
Term
DNA polymerase
Definition
Moves along DNA sticking free nucleotides together, making the complementary strand (can only go 5' to 3')
Term
DNA ligase
Definition
connects lagging strand sections
Term
Steps of DNA replication
Definition
1. Single stranded
2. Priming
3. Leading strand replicated
4. Laggin strand replicated
Term
Nucleases
Definition
Cut out mismatched DNA if proofreading fails. Also remove nucleotides damaged by chemicals and radiation
Term
Thymine Dimers
Definition
Created by UV light hitting DNA. DNA polymerase can't replicated through it
Term
What causes a sunburn?
Definition
Many cells inducing apoptosis due to thymine dimers
Term
molecular biology dogma
Definition
1. DNA
-transcription
2. Pre mRNA
-RNA processing
3. mRNA
-Translation
4. Ribosomes and stuff
Term
RNA polymerase
Definition
An enzyme that links ribonucleotides into a growing RNA chain during transcription. Turns DNA sequence into RNA sequence in transcription
Term
Promoters
Definition
DNA sequences where transcription starts
Term
Transcription factor
Definition
A regulatory protein that binds to DNA and affects transcription of specific genes
Term
Exon
Definition
Protein coding sequences in pre mRNA
Term
Intron
Definition
Intervening, non protein coding sequences in pre mRNA
Term
Splicing
Definition
process in pre mRNA. Introns get taken out and Exons get connected to eachother
Term
Spliceosome
Definition
In pre mRNA. splices
Term
about the number of genes to make a person
Definition
30,000
Term
CpG cap
Definition
added to the front (5') end of mRNA. modified guanine nucleotide. for stabilization and ribosome binding
Term
AAAAAAAA
Definition
poly-A tail added to back (3') end of mRNA. adenine nucleotides. mainly for stabilization
Term
Translation
Definition
conversion of mRNA into protiens
Term
RNA and DNA are each made of ____ kinds of monomers (nucleotides).
Proteins are made of ____kinds of monomers (amino acids).
Definition
4, 20
Term
codon
Definition
set of 3 nucleotides that make up an amino acid (protein)
Term
start codon
Definition
AUG. codes for an amino acid AND the start of translation. Codes for Methionine, the first amino acid of any protein
Term
Ribosome
Definition
protein/RNA complexes that translate mRNA into proteins
Term
tRNAs
Definition
shuttle amino acids to the Ribosome which makes them into proteins
Term
Steps of Translation
Definition
1. Mature mRNA is exported from the nucleus to the cytoplasm
2. Ribosome binds to the mRNA
3. Translation starts when ribosome hits AUG
4. Ribosome covalently binds amino acids to form proteins
5. Translation stops when ribosome reaches a stop condon (TAA for example)
Term
Substitution (mutation)
Definition
Switching one one nucleotide for another. Can cause different amino acids to be created (sickle cell)
Term
Insertion/deletion
Definition
adding or removing a nucleotide to create a frameshift. Almost always results in a shortened protein (cystic fibrosis)
Term
Differential gene expression (gene regulation)
Definition
results in different cell types expressing different proteins. …in other words, a cellʼs structure and function are defined by which genes it turns off and which genes it turns on
Term
snRNAs
Definition
Small nuclear RNAs. Regulate mRNA splicing
Term
RNA transcript turnover regulation
Definition
regulated by 5' and 3' unregulated regions of mRNAs as will as tiny micro RNAs (miRNAs)
Term
post-translational modifications
Definition
regulate protein activity. and protein turnover. Proteins can be turned “on” and “off” by the covalent attachment of small molecules
Term
Phosphorylation
Definition
adding a phosphate group
Term
Phosphorylation
Definition
adding a phosphate group
Term
Methylation
Definition
adding a methyl group
Term
Viruses
Definition
very small particles that infect cells. Consist of nucleic acid surrounded by protein. NOT LIVING THINGS
Term
Capsid
Definition
protein coat around nucleic acid of a virus. made of capsomeres
Term
viral envelope
Definition
membrane envelope around the capsid in viruses. made from host cell membrane
Term
typical virus life cycle
Definition
1. attachment of the virus to outside of host cell
2. releases genome into the cell
3. the cell begins to manufacture viral proteins
4. nucleic acid molecules and capsomeres spontaneously self- assemble into new viruses
5. new virus particles break out of the cell
Term
H in HxNx
Definition
Hemagglutinin
Term
N in HxNx
Definition
Neuraminidase
Term
H8N5
Definition
swag flu
Term
why do we manipulate DNA?
Definition
1. basic research
2. applied biomedical research
3. industrial applications
Term
ingredients in PCR
Definition
DNA template
Primers
DNA polymerase
nucleotides
Term
performing PCR
Definition
1. high temp (separates DNA strands)
2. Low temp (allows primer to bind)
3. Medium Temp (allows DNA polymerase to work)
Term
plasmid
Definition
a circular piece of bacterial DNA used for replicating DNA
Term
recombinant DNA
Definition
DNA created by fusing sequences from different species
Term
restriction enzymes
Definition
are sequence-specific molecular scissors
Term
How does Dideoxy Termination sequencing work?
Definition
A PCR-like reaction is set up with template, primers, DNA polymerase,
nucleotides
• In addition, special dye-labeled dideoxynucleotides are added
• Each dideoxynucleotide is a different color
Then, electropheresis
Term
Shotgun genome sequence
Definition
1. Cut DNA into short sequences
2. Clone the sequences into plasmid
3. sequence each fragment
4. order the sequences with software
Term
over-expression
Definition
Artificially increasing the expression of a geneʼs protein product
Term
Microinjection
Definition
injecting mRNA or DNA into an animal to over-express proteins
Term
Electroporation
Definition
an electrical current opens holes in
the cell membrane, allowing DNA or RNA to enter
Term
Something about microinjection and electroporation
Definition
Results are only temporary, not heritable
Term
Four ways to “knock down” or “knock out” a gene:
Definition
Random mutation
Targeted removal
Small interfering RNAs
Stabilized anti-sense oligonucleotides
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