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Biology
EK Lecture 1: Molecular Biology, Cellular Respiration
26
Biology
Undergraduate 3
05/29/2012

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Cards

Term
How macromolecules are broken apart
Definition

Via hydrolysis (H2O split into OH- and H+).

 

Macromolecules ---> Micromolecules + H2O

Term
How macromolecules are formed
Definition

Via dehydration (lose water).

 

Micromolecules + H2O ---> Macromolecules

Term
Lipid
Definition
Low solubility in water and high solubility in nonpolar organic solvents. Hydrophobic, make great barriers separating aqueous environments.
Term
Six groups of lipids
Definition
Fatty acids, triacylglycerols, phospholipids, glycolipids, steroids, terpenes.
Term
Fatty Acids
Definition

Building blocks for most complex lipids. Long chains of carbons with carboxylic acid at one end. Usually even number of carbons. Max in humans is 24 carbons. Saturated (only single C-C bonds) or unsaturated (one or more C=C bonds). Oxidation of them gives large amounts of chemical energy.

 

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Term
Triacylglycerols
Definition

Also called triglycerides or fats and oils. Three-carbon backbone called glycerol which is attached to three fatty acids. Store energy, provide thermal insulation and padding.

 

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Term
Adipoctyes
Definition
Fat cells.  Specialized cells whose cytoplasm contains almost nothing but triglycerides.
Term
Phospholipids
Definition

Built from glycerol backbone.  Polar phosphate group replaces one of the fatty acids.  Phosphate group on opposite side of glycerol from the fatty acids, making it polar at the phosphate end and nonpolar at the fatty acid end (amphipathic).  In membranes (structural).

 

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Term
Glycolipids
Definition
Similar to phospholipids, but have one or more carbohydrates attached to the glycerol backone instead of the phosphate group.  Also amphipathic.  In membranes of myelinated cells.
Term
Steroids
Definition

Four-ringed structures.  Include hormones, vitamin D and cholesterol.  Important in membranes, regulating metabolic activities.

 

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Term
Terpenes
Definition
Include vitamin A.
Term
Eicosanoids
Definition
20-carbon, fatty acid-like.  Include prostaglandins, thromboxanes and leukotrienes.  Released from cell membranes as local hormones (regulate blood pressure, body temp, smooth muscle contraction, etc.)
Term
Lipoproteins
Definition

Transport lipids in the blood.  Lipid core surrounded by phospholipids and apoproteins.  Dissolves lipids in its hydrophobic core, then moves freely through the aqueous solution due to its hydrophilic shell.

 

Classified by density (greater ratio of lipid to protein, lower density) - chylomicrons, very low density lipoproteins (VLDL), low density lipoproteins (LDL), high density lipoproteins (HDL).

 

VLDL and LDL bad b/c more lipid than protein.  HDL good b/c more proetin than lipid.

Term
Proteins
Definition
From chain of amino acids linked together by peptide bonds.  Also called polypeptides.
Term
Essential (as in amino acids)
Definition
Body doesn't make it by itself; need to ingest.
Term
Amino Acids
Definition
Side chains attached to alpha-Carbon.  Digested proteins reach cells as single amino acids.  In solution, amino acids always carry one or more charges (position & charge depends on pH).
Term
Amino Acids w/ Nonpolar R Groups
Definition

Glycine: 

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Alanine:

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Valine: 

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Leucine: 

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Isoleucine: 

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Phenylalanine: 

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Tryptophan: 

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Methionine: 

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Proline: 

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Term
Amino Acids w/ Polar R Groups
Definition

Serine:

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Threonine:

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Cysteine:

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Tyrosine:

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Asparagine:

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Glutamine:

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Term
Amino Acids w/ Acidic R Groups
Definition

Aspartic Acid:

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Glutamic Acid:

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Term
Basic R Groups
Definition

Lysine:

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Arginine:

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Histidine:

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Term
Primary Structure
Definition
Number and sequence of amino acids in polypeptide.  All proteins have this, most have secondary.
Term
alpha-Helix
Definition

Single chain twists.  Reinforced by hydrogen bonds between carbonyl oxygen and hydrogen on amino.

 

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Term
beta-Pleated Sheet
Definition

Single chain lies alongside itself.  Connecting segments of two strands can lie in same direction (parallel) or opposite (antiparallel).  Reinforced by hydrogen bonds between carbonyl oxygen and hydrogen on amino.

 

 [image]

Term
Tertiary Structure
Definition

Larger proteins (globular, fibrous/structural, etc.) can have this and quaternary.  3D shape formed when peptide chain curls and folds.

 

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Term
Quaternary Structure
Definition

Two or more polypeptide chains binding together.

 

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Term

Forces to Make

Tertiary and Quaternary Structures

Definition

1. covalent disulfide bonds between two cysteine amino acids on different parts of the chain

2. electrostatic (ionic) interactions mostly between acidic and basic side chains

3. hydrogen bonds

4. van der Waals forces

5. hydrophobic side chains pushed away from water (toward center of protein)

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