Shared Flashcard Set

Details

Biology of Managed Ecosystems
University of Guelph BIOL*1050
654
Biology
Undergraduate 1
11/13/2013

Additional Biology Flashcards

 


 

Cards

Term
Hydroxyl
Definition
-OH
The functional group of alcohols. Polar; dissolves in water. Can dissolve organic compounds.
Term
Carbonyl
Definition
-(C=O)-
The functional group of ketones and aldehydes. If it occurs on the end of a carbon chain it is an aldehyde. If it occurs in the middle of the carbon chain, it is a ketone. Both are found in sugars.
Term
Ketones
Definition
-(C=O)-
A carbonyl group in the middle of a carbon chain. It is found on ketose sugars.
Term
Aldehydes
Definition
-CH=O
A carbonyl group on the end of a carbon chain. It is found on aldose sugars.
Term
Carboxyl
Definition
-COOH
The functional group of carboxylic acids. It is acidic.
Term
Amino
Definition
-NH2
The functional groups of amines. It is basic.
Term
Sulfhydryl
Definition
-SH
The functional group of thiols. Two can form covalent bonds with each other when in proteins.
This controls the curliness or straightness of hair.
Term
Phosphate
Definition
-PO4 (2-)
The functional group of organic phosphates. It is in ATP.
Term
Methyl
Definition
-CH3
The functional group of methylated compounds. It is in DNA and some hormones.
Term
Polymer
Definition
Also called a macromolecule. A very large compound formed of smaller monomers.
Term
Monomer
Definition
Smaller compounds that form large polymers.
Term
Dehydration
Definition
When two monomers are attached, releasing water. This requires energy. An enzyme is required. AH + BOH -> AB + H2O
Term
Hydrolysis
Definition
When tow monomers are detached, absorbing water. This releases energy. An enzyme is required. AB + H2O -> AH + BOH
Term
Monosaccharides
Definition
Single carbohydrate rings. The rings can have 3, 5, or 6 carbons.
Term
Ketose
Definition
A sugar with a ketone group.
Term
Aldose
Definition
A sugar with an aldehyde group.
Term
Triose
Definition
A sugar with 3 carbons.
The trioses are:
-Glyceraldehyde
-Dihydroxacetone
Term
Pentose
Definition
A sugar with 5 carbons. The pentoses are: -Ribose -Ribulose
Term
Hexose
Definition
A sugar with 6 carbons.
The hexoses are:
-Glucose (alpha and beta)
-Galactose
-Fructose
Term
Carbohydrate
Definition
Sugars. Can be monosaccharides, disaccharides, or polysaccharides. They are used by organisms for fuel, storage, or structures.
Term
Dissccharides
Definition
Two monosaccharides formed together from a glycosidic linkage. The disaccharides are: -Maltose -Sucrose -Lactose
Term
Glycosidic Linkage
Definition
The link between two monosaccharides.
Term
Maltose
Definition
A disaccharide. It is two glucose molecules attached by a glycosidic linkage. It is used in beer making. Digested by maltose released in the small intestine.
Term
Sucrose
Definition
A disaccharide. It is a glucose and a fructose attached by a glycosidic linkage. Digested by sucrose released by the small intestine.
Term
Lactose
Definition

A disaccharide. It is a glucose and a galactose attached by a glycosidic linkage. It is in milk. Digested by lactase released in the small intestine. Some people do not have lactose and cannot digest milk: lactose intolerance.

Lactose is made in the epithelial cells of the mammary gland from glucose obtained from the blood stream (half is turned to galactose first) or  from VFAs. The percentage of lactose in milk is positively correlated to milk volume.

Term
Polysaccharides
Definition
Many monosaccharides attached together into a chain by glycosidic linkages. They can by used by organisms for storage or for structure.
Term
Starch
Definition
A polysaccharide used by plants for storage. It is alpha glucoses attached by 1,4 glycosidic linkages, forming a helical shape. It is digestible by animals. The starches are: -Amylose -Amylopectin.
Term
Amylose
Definition
A starch that does not branch.
Term
Amylopectin
Definition
A starch that has branches.
At the branches, there are 1-6 linkages.
Term
Glycogen
Definition
A polysaccharide used by animals for short term storage (runs out after a day). It is alpha glucoses attached by 1,4 glycosidic linkages. Glycogen is highly branched. At the branches, there are 1,6 linkages. In digestion, amylase in the saliva and from the pancrease digest it.
Term
Cellulose
Definition
A polysaccharide used for structure in plants. It is the most abundant organic molecule on Earth. Alternating alpha and beta glucoses, making a straight chain, never branched. The chains form hydrogen bonds with other cellulose molecules, forming microfibrils. It is indigestable by animals. Celulase is required. Bacteria with celulase are needed to harvest energy from cellulose.
Term
Microfibrils
Definition
A group of around 80 cellulose molecules that form hydrogen bonds with each other. They are very strong. Used for structure by plants.
Dietary fibre. Plant fibre used to make paper and fabrics.
Term
Chitin
Definition
A polysaccharide used for structure by animals and fungi. It is in the shells of arthropods (insects, arachnids, crustaceans). It is used in surgical thread because it dissolves into the body once the wound is healed.
It is similar to cellulose in structure, but each monomer contains a nitrogen containing functional group.
Term
Lipid
Definition
Includes fats, phospholipids, steroids, and waxes. They do not mix with water.
Term
Fat
Definition
A glycerol with fatty acids attached by ester linkages. Fats store twice as much energy per gram than starch. Fat is used by animals for storage for this reason (it is more efficient to move around). Fat in animals is stored in adipose tissue. In digestion  fat droplets are made into micelles (very tiny droplets) by bile salts released from the gall bladder. Then it is digested by lipase released from the pancreas. In metabolism fats are broken into glycerol and fatty acids in order to enter the cell (no transport protein needed). They are then packaged into a chylomicron and sent to the lacteal system.
Term
Fatty Acid
Definition
A long carboxylic acid. Combines with glycerol by ester linkages to make fat.
Fatty acids can be saturated or unsaturated.
In metabolism, fatty acids are broken down with beta oxidation into 2-carbon fragments. They enter the citric acid cycle at Coenzyme A.
Term
Glycerol
Definition
OH-CH2-CH(OH)-CH2-OH
An alcohol. Combines with a maximum of three fatty acids with ester linkages to make fat.
In metabolism, glycerol directly enters into glycolysis.
Term
Triglyceride
Definition
A fat with three (the maximum number) fatty acids.
Term
Ester Linkage
Definition
The linkage between a fatty acid and a glycerol.
Term
Adipose Tissue
Definition
Tissue high in fat. It shrinks and grows as needed. It protects organs from harm and provides insulation for the body.
Term
Saturated Fatty Acid
Definition
A fatty acid that has all possible hydrogens present. The molecule is straight in shape. If all fatty acids attached to a glycerol are saturated, it makes a saturated fat.
Term
Unsaturated Fatty Acid
Definition
A fatty acid with some hydrogens missing. This causes kinks in the molecule, making it a unique shape. When attached to a glycerol it makes an unsaturated fat.
Term
Saturated Fat
Definition
A fat that is formed from only saturated fatty acids. The molecules pack closely together, and are solid at room temperature. Animal fats are commonly saturated. Too much saturated fat in the diet can lead to artherosclerosis.
Trans fat is a saturated fat.
Term
Artherosclerosis
Definition
A cardiovascular disease caused by too much saturated fats in the diet. Plaques form in the blood vessels.
Term
Unsaturated Fat
Definition
A fat that is formed from one or more unsaturated fatty acids. The molecules are irregular shapes and to not fit closely together, and are liquid at room temperature. Plant fats are commonly unsaturated.
Term
Trans Fat
Definition
Also called hydrogenated oils. An unsaturated fat that has been chemically modified to be saturated to make it a solid at room temperature. They are worse for artherosclerosis than other saturated fats are.
Term
Phospholipids
Definition
They make up cell membranes of all organisms. A hydrophilic head attached to two hydrophobic tails. It forms a bilayer in water because of this. The tails go in and the heads go out. The amount of saturated fatty acid tails effects the fluidity of the cell wall. Cell wall fluidity is very important and varies by cell and organism.
Term
Steroid
Definition
A molecule of 4 fused carbon rings, containing unique functional groups. The testosterone, estradiol, progesterone, cortisol, cholesterol, and Vitamin D are steroids.
Term
Protein
Definition
Polymers made from amino acid monomers. The most important molecule in the body. 50% of the dry mass of a body is proteins. Proteins each have very specific shapes that are found using X-ray crystallography. They do a huge number of things in the body. Proteins are numerous large, very uniquely shaped polypeptides. The shape of the protein depends on the sequence of the amino acids. 2 amino acids makes a dipeptide. 3 amino acids make a dripeptide. 4 to 49 amino acids are a polypeptide. Over 50 amino acids is a protien. In digestion they are broken down into small peptides by trypsin released from the pancreas. Small peptides are broken into amino acids by aminopeptidase and dipeptidase released from the small intestine epithelial cells.
Term
Enzyme
Definition

Proteins that speed up chemical reactions without being used up by lowering the activation energy of a reaction. Enzyme has an active site where substrates are weakly held. After the reaction is finishd, the substrates leave, freeing the enzme to do more reactions.Very important to digestion. Each enzyme has a specific temperature and pH at which it will work best. In humans at around 37C. In bacteria 77C. If it ends with "-ase" the first part is telling you what its substrate is. Example: amylase digests amylose. 

Do not take enzyme supplements. They are proteins and will be digested, not help digest. This is why insulin must be injected.

Term
Amino Acid
Definition
The monomer that forms polypeptide polymers. They are a carbon with an amino group, a carboyxl group, a hydrogen, and a specific R group. It is the R group that determines the kind of amino acids. There are 20 different amino acids, they can be polar or non-polar, and they can have electrical charges.
Term
Globular Protein
Definition
A protein that is shaped roughly like a sphere.
Example: Hemoglobin.
Term
Fibrous Protein
Definition
A protein shaped roughly like a rod.
Example: Collagen.
Term
Primary Structure
Definition
The first factor in protein shape. The sequence of amino acids. All other structure levels depend on this.
Term
Secondary Structure
Definition
The second factor in protein shape. Hydrogen bonds between amino acids in a protein. They can make the polypeptide an alpha helix or beta pleated, or a combination of these.
Term
Alpha Helix
Definition
A form of secondary structure in proteins where every 4th amino acid forms a hydrogen bond, making a helical shape.
Term
Beta Pleat
Definition
A form of secondary structure in proteins where the polypeptide folds at intervals, making a shape similar to pleats in cloth.
Term
Tertiary Structure
Definition
The third factor in protein shape. Hydrophobic interaction and disulfide bridges.
Term
Hydrophobic Interaction
Definition
A form of tertiary structure in proteins were when the protein is in water the hydrophobic amino acids go towards the center of the protien, away from the water and the hydrophilic amino acids go towards the edge, touching the water.
Term
Disulfide Bridge
Definition
A form of tertiary structure in proteins where two cysteins (an amino acid containing a sulfhydryl functional group) form a covalent bond with each other.
Term
Quaternary Structure
Definition
The fourth factor in protein shape. The way that multiple polypeptides interact together to form a protein.
Term
Collagen
Definition
The most common protein in humans. Used for structure. It is three long helical polypeptides intertwined.
Term
Sickle Cell Disease
Definition
A disorder where one of the amino acids in hemoglobin is wrong. This is a disrupture in primary structure, which then effects the other structures, making it a vastly different shape.
This causes the hemoglobin to not be able to carry oxygen, causing problems for the person. The blood cell becomes a sickle shape, and can cause problems in the blood vessels.
Term
Denaturation
Definition
When proteins unravel and become inactive. Can be due to chemicals or temperature.
Term
Chaperonin
Definition
A protein that aids new proteins in properly folding into their correct shapes. When polypeptides are formed they are not in the shape they need to be in. They cannot fold properly because the parts are also attracted to components of the cytoplasm. Chaperonins are shaped like jars. The polypeptides enter the chaperonin, and a cap portion of the chaperonin isolates them, allowing them to fold.
Chaperonins can work for many proteins.
Alzheimer's, Parkinson's and Mad Cow Disease are incorect folding problems.
Term
Defense Protein
Definition
A protein that marks viruses and harmful bacteria.
Term
Storage Protein
Definition
A protein that stores amino acids in eggs, milk, and seeds.
Term
Transport Protein
Definition
A protein that shuttles other molecules across cell membranes or throughout the body. Can be active or passive transport.
Term
Hormone Protein
Definition
A protein that acts like a hormone; it co-ordinates activities in the body.
Term
Receptor Protein
Definition
A protein that receives steroids and other molecules as signals for DNA action. Most are located in the plasma membrane but some may be in the cytosol. Chemicals bind to the protein, which then can enter the nucleus and make mRNA that triggers specific protein synthase.
Term
Motor Protein
Definition
A protein that moves cilia or flagella, and helps contraction of muscles.
Term
Structure Protein
Definition
A protein that holds the body together. Also in hair, nails, horns, silks, hooves, and feathers, et cetera.
Term
DNA
Definition
Deoxyribonucleic acid. Controls the primary structure of proteins. This controls all other functions in the body. Two polynucleotides lined up 5 end to 3 end and 3 end to 5 end (antiprallel), forming a double helix. The nitrogenous bases face inwards, forming hydrogen bonds with the other polynucleotide. In digestion, it is broken down by nucleases from the pancreas.
Term
RNA
Definition
Ribonucleic acid.
The equivalent of DNA in bacteria, but also exists in other organisms as messenger RNA.
A polymer that is made from one polynucleotide. Its shape varies. It can form hydrogen bonds with itself or with other RNA strands.
Term
Messenger RNA
Definition
Transcripts DNA sequences for use in protein production.
Term
Nucleotide
Definition
The monomer that makes the polymers DNA or RNA.
Is a nitrogenous base, a 5 carbon sugar, and a phosphate group.
Includes pyrimidines an purines.
Term
Pyrimidine
Definition
A nucleotide with a nitrogenous base containing one 6-sided ring.
Includes cytosine (C), thyamine (T), and uracil (U).
Term
Cytosine
Definition
(C)
A pyrimidine (one 6-sided ring) nucleotide that forms hydrogen bonds with guanine (G).
Term
Thyamine
Definition
(T)
A pyrimidine (one 6-sided ring) nucleotide that exists only in DNA and forms hydrogen bonds with adenine (A).
Term
Uracil
Definition
(U)
A pyrimidine (one 6-sided ring) nucleotide that exists only in RNA and forms hydrogen bonds with adenine (A).
Term
Purine
Definition
A nucleotide with a nitrogenous base containing two rings: one 6-sided and one 5-sided.
Includes adenine (A) and guanine (G).
Term
Adenine
Definition
(A)
A purine (one 6-sided ring and one 5-sided ring) nucleotide that forms hydrogen bonds with thyamine (T) in DNA and uracil (U) in RNA.
Term
Guanine
Definition
(G) A purine (one 6-sided ring and one 5-sided ring) nucleotide that forms hydrogen bonds with cytosine (C).
Term
Polynucleotide
Definition
A polymer made from nucleotide monomers joined together at carbons 3 and 5. It has a 3 end and a 5 end.
Term
Genes
Definition
Specific nucleotide sequences in DNA that are inherited from parent to offspring. The more distantly related two organisms are, the more different their genes are.
Term
Angiosperm
Definition
Latin name angiospermae. "Covered seed". A class within plantae in which the seeds are covered by an ovule.
Term
Gymnospermae
Definition
Latin name gymnospermae. "Naked seed". A class within plantae in which the seeds are in a cone. Conifers.
Term
Archaea
Definition
The domain of life containing archaebacteria. Arhcaebacteria are resistant to antibiotics.
Term
Eukaryote
Definition
The domain of life containing organisms with organelles.
Term
Prokaryote
Definition
The domain of life containing bacteria.
Term
Animalia
Definition
The kingdom of eukaryotes containing animals. Cells are around 10 micrometers in diameter. Multicellular. No cell wall. Heterotrophic. Mobile. Determinate growth.
Term
Fungi
Definition
The kingdom of eukaryotes containing fungus. Cells are around 5 micrometers in diameter. Multicellular or unicellular. Cell walls of chitin. Heterotrophic. Immobile.
Term
Plantae
Definition
The kingdom of eukaryote containing plants. They are important because they make oxygen, food, pharmaceuticals, fibre, fuel, and increase our quality of life. All animal life depends on plants! Multicellular. Autotrophic. Have cell walls of cellulose. Indeterminate growth. Immobile, however they can sense environmental stimuli and alter growth or development.
Term
Protist
Definition
The kingdom of eukaryotes containing protists. Unicellular. Autotrophic or heterotrophic.
Term
Spermophyta
Definition
A subdivision of plantae containing angiosperms and gymnosperms.
Term
Dicot
Definition
Also called eudicots. Latin name eudicotyledonae. A subclass of angiosperms.
Term
Monocot
Definition
Latin name monocotyledonae. A subclass of angiosperms.
Term
Latin Name
Definition
Genus species (Authority.)
This is useful because it can convey specific species even across very different languages.
Term
Carl Linneaus
Definition

A Swedish botanist from the 1700s. Came up with the the idea of Latin names for all species. A (L.) at the end of a Latin name means he named that species.

Also discovered that different flowers open at different times of day.

Term
Canola
Definition
The most valuable crop in Canada. Used for edible oil, the "World's Healthiest Oil". Also used for animal feed and biodiesel production. Contributes $15.4 billion dollars to the economy.
Term
Wisconsin Fast Plant
Definition
A group of plants developed at the University of Wisconsin. Completes its lifecycle in 35 to 42 days!
Term
Flower
Definition

The reproductive structure of angiospermms that produces and attracts gametes. Aids in pollen dispersal and collection. Develops the seeds and fruit.

Flower development is dependant on photoperiodism and sometimes vernalization. The gene FT is activated in the leaves and travels to apical meristems, changing the bud's identity to a flower rather than a vegetative shoot.

Term
Seed
Definition
A plant embryo and a nutrient source wrapped in a protective coat.
Term
Fruit
Definition
Develops from the receptacle or ovary only after fertilization. Contains seeds. Surrounded by the pericarp. Aids in seed dispersal. Can be dry or fleshy. Includes simple fruits, aggregate fruits, multiple fruits, and accessory fruits.
Term
Receptacle
Definition
Where the flower connects to the stem.
Term
Sepal
Definition
Small leaves below the petals of a flower.
Term
Petal
Definition
Colourful leaves adapted to attract pollinators in flowers.
Term
Stamen
Definition
The male parts of a flower. Includes the anthers and fillaments.
Term
Fillament
Definition
A flowers organ that holds the anthers up for optimal dispersal of pollen.
Term
Carpel
Definition
The female parts of a flower. Includes the stigma, style, and ovary.
Term
Anther
Definition
A flower organ on the end of the fillaments. Contains pollen sacs.
Term
Microsporangia
Definition
Also called pollen sacs. Flower organ inside the anthers where male haploids are made. Contains microsporocytes.
Term
Style
Definition
A flower organ that holds up the stigma for optimal pollen collection. When pollinated, the pollen tube must grow its entire length.
When there is only one carpel per flower it is called a pistil.
Term
Stigma
Definition
A flower organ on the end of the style that collects pollen. It is sticky.
Term

Ovary (plant)

Definition
A flower organ at the base of the style. Contains one or more ovules. Each ovary becomes one fruit.
Term
Ovule
Definition
A flower organ inside the ovary. Each ovule can develop into one seed. Contains the embryo sac.
Term
Pistil
Definition
The word for style when there is only one carpel per flower.
Term
Haploid
Definition
(1n)
Having half a set of chromosomes. Gametophytes are haploid.
Term
Diploid
Definition
(2n)
Having a full set of chromosomes. Sporophytes are diploid.
Term
Sporophyte
Definition
The diploid stage of a plant. Produces haploid spores that then grow into haploid gametopytes. In angiosperms, the sporophyte is the dominant stage. In mosses and liverwort it is not as dominant.
Term
Spore
Definition
Haploid cells produced by the sporophyte stage of a plant. They develop into haploid gametophytes.
Term
Gametophyte
Definition
The haploid stage of a plant. Grow from haploid spores produced by the sporophyte. They must combine with another gametophyte to complete their chromosome set in order to produce a sporophyte. In angiosperms, gametophytes rely entirely on the parent plant for nutrients.
Term
Complete Flower
Definition
A flower that contains all 4 flower organs: sepals, petals, stamen, and carpels.
Term
Incomplete Flower
Definition
A flower that is missing one or more of the 4 organs sepal, petal, stamen, or carpel.
Term
Staminate Flower
Definition
A flower that does not contain carpels. It is a male flower.
Term
Carpelate Flower
Definition
A flower that does not contain sepals. It is a female flower.
Term
Inflorescence
Definition
A flower that is actually many small flowers bunched together.
Term
Microspore
Definition
A haploid spore produced by the microsporangia. Undergoes mitosis to make two cells: the generative cell and the tube cell.
Term
Generative Cell
Definition
A haploid cell created by the microspore. Inside pollen grain, it is within the tube cell. As the tube cell grows down the style, it undergoes mitosis to form two sperm cells. One fertilizes the egg, making a diploid zygote. The other fertilizes the polar nuclei, making a triploid endosperm.
Term
Tube Cell
Definition
A haploid cell created by the microspore. Inside the pollen grain, the generative cell is inside it. Upon pollination the tube cell grows a pollen tube down the style to the ovary, releasing two sperm created by the generative cell.
Term
Pollen Grain
Definition
The male gamete of flowers. A generative cell within a tube cell. Upon pollination the tube cell grows down the style to the ovary, releasing two sperm cells created by the generative cell.
Term
Embryo Sac
Definition
Develops in the ovule. Two integuments surround a megasporangium. There is an opening at the botton called the micropyle.
Term
Megasporangium
Definition
Inside the integuments of the embryo sac. Where female gametophtes are made and seed is developed.Contains the megasporocytes.
Term
Megaspore
Definition
A haploid cell made by the megasporocyte in the megasporangium. There are 4 of them but only one survives. The one that survives divides to make a large haploid cell with 8 nuclei: 3 antipodal cells, 2 polar nuclei, 2 syngergids, and 1 egg. Nucleus fates are decided by auxin gradients.
Term
Pollination
Definition
Pollen travels from the anthers of one plant to the stigma of another plant. May be done by wind, water, or animals. Upon pollination, the pollen grain grows a pollen tube to the ovary and discharges two sperm near the micropyle.
When two pollen grains land on the same stigma, a race to the ovary begins.
Term
Wind Pollination
Definition
Pollen travels to other plants via the wind. The plant must produce many small pollen grains for this to work efficiently. Grapes, grass, corn, wheat, many weeds, hazel. The pollen sometimes cause allergies in people.
Term
Ragweed
Definition
The real culprit of Hay Fever, not goldenrod as some people think. Ragweed wind pollinates. Some people are allergic to the pollen.
Term
Animal Pollination
Definition
Pollen travels to other plants via animals. The flowers are usually large and colourful to attract these animals. May be bees, butterflies, moths, flies, birds, or bats.
Insects see in infrared. Some flowers have infrared "landing strips" on them, or sometimes they mimic the female of their species to attract them. Some flowers have nectar to attract animals.
Term
Coevolution
Definition
When the evolutions of two species affect the evolution of the other, causing them to evolve together. Example the shape of flower nectaries and the morphology of pollinators.
Term
Nectary
Definition
An organ in animal-pollinated flowers that makes nectar that attracts animals.
Term
Nectar
Definition
A sugary fluid produced by animal-pollinated flowers that attracts animals.
Term
Double Fertilization
Definition
Upon pollination, after the pollen tube grows to the micropyle and releases two sperm, one sperm fertilizes the polar nuceli, making a triploid endosperm. The other fertilizes the egg, making a diploid zygote.
This prevents from non-fertilized ovaries developing endosperms.
Directly after double fertilization, calcium ions in the zygote increase rapidly to inhibit polyspermy.
Term
Endosperm
Definition
A triploid food source of the seed. Can be in the form of starch or oil. Formed when the polar nuclei are fertilized. Develops before the seed. In dicots, food is moved to cotyledons. In monocots, the endosperm is the food source.
Term
Micropyle
Definition
An opening at the bottom of the embryo sac where the two sperm enter.
Term
Antipodal Cells
Definition
Three haploid cells formed from the megaspore of unknown purpose. They reside in the opposite end of the embryo sac than the micropyle.
Term
Polar Nuclei
Definition
Two haploid cells formed from the megaspore near the centre of the embryo sac. They are fertilized to make a triploid endospore.
Term
Synergids
Definition
Two haploid cells formed by the megaspore. Near the entrance of the micropyle. Release chemicals that attract the pollen tube.
Term
Egg (plant)
Definition
A haploid cell formed by the megaspore. The female gamete. Resides near the entrance of the micropyle. Is fertilized to form a diploid zygote.
Term
Zygote (plant)
Definition
A diploid cell formed when the egg is fertilized by a sperm. It becomes the embryo. First it undergoes mitosis to form the basal cell and the terminal cell.
Term
Polyspermy
Definition
When more than one cell fertilizes the egg. In animals this causes identical twins.
Term
Sweet Corn
Definition
A breed of corn. There is standard sweet, sugary sweet, sugar enhanced, and triple sweet. To make sweet corn the corn must be pollinated only by other sweet corn, or the endosperm will become starchy. To get this, must be planted at least 250 feet away from any other corn. Yellow is the dominant colour in sweet corn.
Term
Embryo
Definition
Forms from the zygote. First two cells are the basal cell and the terminal cell. The seed forms around it until it is germinated. Then it grows into a plant.
Term
Basal Cell
Definition
A cell produced by the zygote. It produces a suspensor that anchors the embryo to the parent plant, receiving nutrients.
Term
Suspensor
Definition
Produced by the basal cell, it anchors the embryo to the parent plant. Nutrients from the parent plant pass to the embryo through it.
Term
Terminal Cell
Definition
Produced by the zygote. It grows into the rest of the plant.
Term
Seed Coat
Definition
The outer shell of a mature seed. Forms from the integuments.
Term
Dormancy
Definition
Germination is postponed. This increases the plant's chances of germinating during an optimal time. Some seeds can stay dormant for thousands of years. This sometimes a problem especially with weeds, which can stay dormant for up to 40 years. The oldest seed to germinate was 2000 years old. Some seeds, such as spinach, have no dormancy period. The seed water content drops to 5 to 15%. There are physical and physiological dormancy.
Term
Cotyledon
Definition
The first leaves of a plant. Produced by the terminal cell. Monocots have one, called the scutellum. Dicots have two. In dicot seeds they contain the food source.
Term
Hypocotyl
Definition
The embryonic axis below the cotyledons.
Term
Embryonic Axis
Definition
The core of the seed. Above the cotyledons it is the epicotyl, below it is the hypocotyl, and at the end it is the radicle.
Term
Epicotyl
Definition
The embryonic axis above the cotyledons.
Term
Radicle
Definition
The end of the hypocotyl. It is the first structure to emerge from the seed. It becomes the roots.
Term
Scutellum
Definition
The cotyledon in monocot seeds. It has this name because it is shield shaped.
Term
Coleoptile
Definition
The protective covering over the young shoot in a monocot seed. Helps in soil penetration at germination.
Term
Coleorhiza
Definition
The protective covering over the young root in a monocot seed.
Term
Physical Dormancy
Definition
Seed dormancy in which the seed coat is impervious to water. Germination occurs upon imbibition which occurs because of weathering or damage.
Term
Imbibition
Definition
When a dormant seed takes up water, causing germination.
Term
Scarification
Definition
The damaging of dormant seeds in attempt to cause imbibition and germination.
Term
Physiological Dormancy
Definition
The seed is not fully developed but the fruit is. The seed can leave the plant, but the seed cannot germinate until the seed is fully developed. This is controlled by chemicals that cause or inhibit germination.
Example: holly.
Term
Stratification
Definition
A period of warmth or cold required for certain seeds to germinate. Some seeds, such as wild leeeks, require complex alternating cold or warm periods.
This ensures that the seeds germinate in the appropriate season for growth (usually spring).
Term
Self-Fertilization
Definition
When a plant pollinates itself or when a hermaphrodite animal fertilizes its own eggs. A form of sexual reproduction, but it produces a clone. Some plants have barriers that prevent self-fertilization such as flower structure, self-incompatibility, or the timing of stamen or carpel development or the timing of flower opening. Farmers can prevent self-fertilization by removing the anthers or by breeding male-sterile plants.
Term
Dioecious
Definition
"Two houses". When a plant has staminate and carpelate flowers on separate plants. A way to prevent self-fertilization.
Term
Monoecious
Definition
"One house". When a plant has stamens and carpels on separate flowers. A way to prevent self-fertilization.
Term
Thrum
Definition
Flowers with the stamens taller than the carpels. A way to prevent self-fertilization.
Term
Pin
Definition
Flowers with the carpels taller than the stamens. A way to prevent self-fertilization.
Term
Self-Incompatibility
Definition
When a plant rejects its own pollen or the pollen of closely related plants. If it's own pollen pollinates a flower, the pollen will recognize its own S-gene with the matching allele and not grow a pollen tube. There are dozens of different S-genes.
Term
Rose Family
Definition
The plants have 5 separate petals on the flowers. A lot of fruit crops belong to this family including apples, pears, peaches, plums, strawberries, and roses.
Term
Bananas
Definition
Are triploid. They cannot produce seeds. Instead they reproduce vegetatively. They are the largest herbaceous plant in the world.
Term
Germination
Definition

When a seed imbibes enough water to become active. This can also be triggered by lighting, temperature, or chemicals. Phytochromes are active in light-sensitive germinations. Red light is the optimum light for germination, but far red light inhibits it; this is because of chromophore isomers. When light becomes optimal (perhaps a nearby tree died or a field was plowed)

The radicle emerges first. It pushes through the soil downward, sensing gravity with its statoliths. The shoot emerges next. In monocots they enter "flag" stage. In dicots, they enter "hook" stage. In hook stage the cotyledons are still underground, but the meristem is above the ground; this makes it vulnerable to herbicides or frost at this time. Light causes the hook to straighten.

Term
Corn
Definition

In corn the tassel part is the stamen, and the silks are the carpels. Corn would not survive without humans because it has no other method of spreading its seeds.

When using nitrogen fertilizers, lots of nitrogen is stored in the stalk. Stalk can no longer be used for animal feed, since nitrogen is fatal to animals (binds to hemoglobin).

Term
Achene
Definition
A tye of accessor fruit where the receptacle is on the inside and the ovaries on the outside. Includes strawberries and marijuana.
Term
Dry Fruit
Definition
A fruit that is dried out. Includes grains, maple keys, et cetera.
Term
Fleshy Fruit
Definition
A fruit that is fleshy and wet. Includes apples, peaches, pears, berries, et cetera.
Term
Seed Dispersal
Definition
Fruits are the main aid in seed dispersal. Methods include water, air, and animals.
Term
Castor Bean
Definition
A dicot bean that contains the poison ricin.
Term
Silique
Definition
A fruit that opens downward, spilling its seeds everywhere. Example: mustard, canola.
Term
Amyloplast
Definition
A plant organelle that contains starch.
Term
Statolith
Definition
An amyloplast found in root cap cells that uses the dense starch grains to sense gravity. It sinks to the bottom of the cell, redistributing calcium. Auxin goes to the top of the cell, causing rapid cell production that curves the root tip downwards.
Term
Agriculture
Definition
The most effective method of seed dispersal. Humans and plants form a sybiotic relationship in which the plants provide us with food and other products, and we spread their seeds.
Term
Sexual Reproduction
Definition
Reproduction that requires two haploid gametes. Usually requires two parents. Produces a genetically unique offspring, unless self-fertilization occurs. Passes on only half of each parents' genetic legacy. Bad in situations where there are no individuals around to reproduce with. Also  bad because seedlings/infants are very vulnerable to hazards. But good if the environment suddenly changes, favouring genetic diversity. Good in plants because it facilitates seed dispersal. In animals sexual reproduction increases population size much slower than asexual reproduction. More than 2 offspring per female must be produced to increase population size, however adaptation of a species to environment is quicker.
Term
Asexual Reproduction
Definition

Also called vegetative reproduction. Reproduction that skips the haploid stage. Only one parent is required. The offspring are genetically identical clones of the parent. Allows the parent to pass on its entire genetic legacy. Good in situations where there are few other plants around to reproduce with, or no pollinators, or if the parent is very well adapted to the environment. Bad if the environment suddenly changes, favouring genetic diversity.

In animals, asexual reproduction increases the population size much faster than sexual reproduction.

Term
Apomixis
Definition
Asexual reproduction from a diploid cell. Could be a megasporocyte or other ovary cell that developed into a seed.
Example: citrus, mangoes, and kentucky bluegrass.
Term
Parthenogenisis
Definition

In plants its when a fruit forms without seeds in it. Not a form of reproduction. Either from hybrid plants or plants that were produced asexually. Example: cucumbers, bananas.

In animals its when offspring are produced from eggs that are not fertilized. Offspring may be diploid or haploid.

Term
Stenospermocarpy
Definition
The early death of a plant embryo. Produces a seedless fruit. Example: seedless watermelon.
Term
Totipotent
Definition
Plant cells with the ability to generate the whole plant asexually when cut off from the rest of the plant.
Term
Callus
Definition
A mass of undifferentiated cells that forms from a cutting of totipotent cells.
Term
Grafting
Definition
The attachment of a scion to a stock to achieve higher quality fruits, disease or frost resistance, or faster fruits.
Term
Ontario Wine Grapes
Definition
French grapes grafted onto the stocks of Ontario grapes. Make better grapes for wine production with better resistance to frost and soil pathogens.
Term
Stock
Definition
What the scion is grafted onto. Provides the root system.
Term
Scion
Definition
The branches of a plant that are grafted onto a stock. Provide the desirable part of a grafting situation: the fruits.
Term
Plantlet
Definition
Small plants formed from the stem or leaves (as in the Kalanchoe) of the parent plant via asexual reproduction.
Term
Bulb
Definition
Fleshy underground leaves used for storage. Can asexually generate the whole plant.
Example: onion, tulip.
Term
Stolon
Definition
A form of asexual reproduction in which an above-ground stem reaches out and generates another plant.
Example: strawberries.
Term
Rhizome
Definition
A form of asexual reproduction in which an underground stem reaches out an generates another plant.
Example: quackgrass, day lily, ginger.
Term
Corm
Definition
A solid, rounded underground stem with nodes. As the original corm runs out or is damaged, smaller cormelles form, which can asexually generate the whole plant.
Example: Taro.
Term
Tuber
Definition
A modified stem used for storage. The buds, "eyes" can asexually reproduce the whole plant.
Example: potatoes.
Term
Plant Breeding
Definition
Has been done since the dawn of agriculture. Today natural mutation rates are too slow for farmers. This can be sped up with large amounts of seedlings and radiation. Plants are bred with wild and/or distant relatives to get desired traits. Breeding across genuses usually results in seed abortion Hybrids an.d GMOs are used today as well.
Term
Teosinte
Definition
The early ancestor of corn. The kernels and the cob are tiny. Its seeds fall of the cob naturally spreading its seeds, making it harder to harvest.
Term
Hybrid
Definition
A cross between two inbred parents, causing hybrid vigor. Hybrid plants have better disease and stress resistance. They are more uniform than other plants. However, using hybrids for breeding will produce highly varied plants.
Term
Triticale
Definition
A cross between wheat and rye (the name comes from a mash-up of their Latin names triticum aestivum and secalle cereale). A novelty grain. These plants are from different genera, so this is a big deal. Has wheat's high yields combined with rye's resistance to cold stress, moisture stress, and acidic soils.
Term
Embryo Rescue
Definition
When the embryo forms but not the endosperm. The embryo must be placed in a tissue culture.
Term
GMO
Definition
Genetically Modified Organism Organisms. Also called transgenic organism. Genetically modified by inserting DNA sequences via bacteria usually in an in vitro cloning situation.
Term
Meristem Tissue Culture
Definition
Removing the meristem and growing it in a tissue culture. The plant is then free from any viruses, bacteria, or fungi. This is used for viruses in asexually reproducing plants such as bananas.
Term
Garlic
Definition
A strictly asexually reproducing plant until recently when a student found a way to get true garlic seeds.
Term
Endoplasmic Reticulum
Definition
ER
An organelle. Membranous sacs and tubes surrounding nucleus. Manufactures membrane. Has rough and smooth regions. Rough ER has ribosomes attached to it.
Term
Nucleus
Definition
An organelle. A nuclear envelope containing the nucleolus.
Term
Nuclear Envelope
Definition
Surrounds the nucleolus in the nucleus. It is a porous double membrane attached to the ER.
Term
Nucleolus
Definition
In the nucleus. It makes ribosomes and contains chromatin.
Term
Chromatin
Definition
The substance of DNA and proteins in the nucleolus. Forms chromosomes when cell is dividing.
Term
Chromosome
Definition
The formation DNA takes when the cell is dividing.
Term
Plasma Membrane
Definition
The membrane surrounding a cell. It is 5 to 10 μm thick. It was discovered in the 1950s after being successfully stained.
Term
Ribosome
Definition
An organelle. Complexes that manufacture proteins. Free in the cytosol or attached to the ER or nuclear envelope.
Term
Cytosol
Definition
The fluid with in a cell.
Term
Golgi Apparatus
Definition
An organelle. Synthesizes, modifies, sorts, and secretes cell products.
Term
Lysosome
Definition
An organelle. Where food is hydrolyzed in intracellular digestion. Also digests worn out organelles.
Term
Mitochondrion
Definition
An organelle. Where cellular respiration occurs. ATP is generated.
Term
Peroxisome
Definition
An organelle. Has various functions including CO2 production during photorespiration. Produces H2O2, but then converts it into water.
Term
Microvilli
Definition
An organelle in some cells. Projections of the plasma membrane that increase cell surface area.
Term
Cytoskeleton
Definition
An organelle. Makes cell shape and movement. Made out of proteins. Has microfilaments, intermediate filaments, and microtubules. Microtubules meet at the centrosome, where two centrioles are.
Term
Centrosome
Definition
An organelle. Where all microtubules of the cytoskeleton meet. It has two centrioles.
Term
Flagellum
Definition
An organelle in some cells. A mobility structure. Microtubules surrounded by plasma membrane.
Term
Catabolic Reaction
Definition
Also called exergonic reactions. A "downhill" reaction. Releases stored energy by breaking complex molecules. Includes fermentation and aerobic respiration. Reactants have more potential energy than the products. The reaction may be spontaneous. It is energetically favourable but not necessarily fast. There is an activation energy that can be lowered by an enzyme.
Term
Fermentation
Definition
Sugars are broken down in the absence of oxygen.
Term
Aerobic Respiration
Definition
More efficient than fermentation. Sugars are broken down in the presence of oxygen.
Term
Glucose
Definition
The most commonly used fuel for cells. Produces 686 kcal of energy, 32 ATPs. Metabolized in many steps, or else all the energy would be released at once in an explosion.
Term
Cellular Respiration
Definition

Aerobic and anaerobic respiration, but mostly aerobic. 34% efficient (cars are 25%). Some steps are anabolic, but overal it is a catabolic process.

Organic compound + oxygen -> CO2 + H2O + Energy

Term
ATP
Definition
Adenosine tiphosphate. The energy "currency" of the cell. Very short term energy storage: only a few seconds. Your body uses a million in a second. Can be used to do many essential cell functions. Energy is obtained from food and stored in the phosphate-oxygen bonds. One ATP goes through tens of thousands of cycles a day. Made by aerobic or anaerobic respiration in the mitochondria. Never is used in reactions, it just goes between ATP and ADP.
Term
Redox Reaction
Definition
An electron is transferred from one molecule to another.
The electron donor is the reducing agent, and the electron recipient is the oxidizing agent. There is an activation energy require, but enzymes in the body lower this energy, allowing redox reactions.
Term
NADH
Definition
Goes back and forth between NAD+. Never gets used in reactions, just goes from one form to the other. A coenzyme that carries electrons. Requires dehydrogenase enzyme to pick up electrons.
Term
Electron Transport Chain
Definition
A series of proteins and non-proteins in the inner mitochondrial membrane. In prokaryotes, it occurs in the plasma membrane. Each protein is more electronegative than the last. Takes NADH electrons and puts them through a series of redox reactions. Makes a H+ gradient in the inner mitochondrial space as the electrons "fall" to lower energies. At the end, they reduce oxygen. No ATP is produced.
1. Flavin mononucleotide (FMN)
2. Iron-sulfur protein (FeS)
3. Ubiquinone (Coenzyme Q). Not a protein.
4. Various cytochromes.

In the chloroplasts, it is in the thylakoid membrane. It connects PS I and PS II. It starts with plastoquinone (Pq), then a cytochrome complex, and ends with plastocyanin (Pc). As the electron falls into a lower state, H+ ions are pumped across the thylakoid membrane.
Term
Glycolysis
Definition
"Sugar splitting". Occurs in the cytosol. Breaks glucose into two pyruvates. Makes NADH and 2 ATP total (2 input, 4 output). 10 steps with 10 different enzymes. Step 3 uses the enzyme phosphofructokinase.
Term
Pyruvate Oxidation
Definition
Pyruvate goes into the mitochondrion and Coenzyme A turns it into Acetyl A, releasing a CO2. 2 NADH are made.
Term
Citric Acid Cycle
Definition
Also called the Krebs cycle. Acetyl CoA is broken into carbon dioxide, producing 1 ATP, 1 FADH2, and 3 NADH each time around. 8 steps. Step 5 may make GDP instead of ATP.
Term
Oxidative Phosphorylation
Definition
ATP production inside the mitochondria. From citric acid cycle and the electron transport chain. 90% of ATP produced.
Term
Substrate Level Phosphorylation
Definition
ATP production in the cytosol. Fermentation and glycolysis.
Term
GDP
Definition
Similar to ATP. GTP can be used for work or to make ATP.
Term
Cytochrome
Definition
Proteins with an iron "heme" group that carries electrons.
Term
Chemiosmosis
Definition
ATP synthase protein uses the ion gradient in the mitochondrial inner membrane to spin its rotor, making ATP. The exact number of ATP per hydrogen ion is debated.
Term
Hibernation
Definition
Brown fat cells in mammals start to metabolize without producing ATP, just releasing body heat.
Term
Anaerobic Respiration
Definition
Some bacteria use SO4 2- instead of oxygen as an electron acceptor, producing H2S. Anaerobic respiration includes alcohol and lactic acid fermentation.
Term
Alcohol Fermentation
Definition
Glucose is turned into 2 pyruvates, releasing 2 ATP using 2 NAD+. Pyruvate is turned into acedaldehyde, releasing CO2. Acetaldehyde turns to ethanol, releasing NADH+. Bacteria that do alcohol fermentation are used in the making of alcoholic beverages and in baking.
Term
Lactic Acid Fermentation
Definition

Pyruvate turns into lactate. No CO2 is released. Bacteria that do lactic acid fermentation are used in cheesemaking. Occurs in muscles under strenuous exersize. 

This kind of fermentation may occur in the rumen if there is too much starch in the diet. This is very unhealthy for the animal.

Term
Obligate Anaerobe
Definition
An organism or cell that can only do anaerobic respiration, and will die if there is oxygen present.
Term
Facultative Anaerobe
Definition
An organism or cell that can do either anaerobic or aerobic repiration,
Term
Beta Oxidation
Definition
The breaking down of fatty acids into 2 carbon fragments.
Term
Anaerobic Pathway
Definition
Pathways that use ATP to make specific molecules not found in the diet: amino acids, fats, nucleic acid, et cetera.
Term
Feedback Mechanisms
Definition
When too much of a substance is made, the pathway making that substance shuts down. The end product inhibits an enzyme in an earlier stage of production.
Term
Phosphofructokinase
Definition
The enzyme in step 3 of glycolysis. ATP and citrate from the citric acid cycle inhibit it, reducing glycolysis. So that there are no overloads on ATP.
Term
Chloroplast
Definition
Organelles in a plant cell. Evolved from prokaryotes trapped inside eukaryotes. Found in all green parts of a plant, mostly in the mesophyll. Has two membranes. The fluid inside is called stroma. Contains thylakoids.
Term
Mesophyll
Definition
The spongy part of a leaf, where most chloroplasts are.
Term
Stomata
Definition

"Mouth". Pores in a leaf where carbon dioxide enters and oxygen exits and water. Generally open in the day during photosynthesis, and closed at night to prevent water loss. This is guided by light, CO2 levels, and an internal "clock". They open even in the dark. They have a Circadian rhythm.

The major site of water loss. Desert plants have much less stomata than marsh plants to conserve water. High light exposure and low CO2 levels in early development can decrease stomata density.

Term
Stroma
Definition
The thick fluid inside chloroplasts. Where the Calvin cycle takes place.
Term
Thylakoid
Definition
Membrane bound sacs inside chloroplasts. Formed into pancake-like stacks, grana. It is filled with chloropyll, making it green.
Term
Grana
Definition
Stacks of thylakoids inside the chloroplast.
Term
Photosynthesis
Definition
Energy + 6CO2 + 12H2O -> C6H12O6 + 6H2O + 6O2
Term
Sulfur Bacteria
Definition
If you look at the general equation,
Energy + 6CO2 + 12H2S -> C6H12O6 + 6H2O + 12S, it shows that in regular photosynthesis it is the water that is split to make O2, and not the CO2.
Term
C.B. Van Niel
Definition
The scientist who discovered that it was the CO2 and not the H2O that is split to make O2 in photosynthesis. Found this out using sulfur bacteria.
Term
Producer
Definition
An organism that takes carbon from CO2 in the air via photosynthesis. Carbon is made into larger molecules. Carbon is also released into the air as CO2 via cellular respiration. Plants.
Term
Primary Consumer
Definition
An organism that gets carbon from eating producers, plants. Carbon is also released into the air as CO2 via cellular respiration. Herbivores.
Term
Higher Level Consumer
Definition
An organism that gets carbon from eating primary consumers or other higher level consumers. Carbon is also released into the air as CO2 via cellular respiration. Carnivores.
Term
Decomposer
Definition
An organism that gets carbon from feces, or dead plant or animal material. Carbon is also released into the air as CO2 via cellular respiration. Fungi, bacteria, et cetera.
Term
Photosystem
Definition
2 kinds of proteins found in the thylakoid membrane connected by an electron transport chain. A reaction centre surrounded by pigment (chlorophyll and carotenoids) light harvesting complexes. There is Photosystem I (35%, in non-stacked thylakoid) and Photosystem II (65%, in stacked thylakoid).
Term
Calvin Cycle
Definition
Occurs in the stroma. CO2 combines with RuBP in a series of reactions that use up NADPH and ATP. A 3 carbon sugar, G3P is made.
Term
G3P
Definition
A 3 carbon sugar made in the Calvin cycle. It is either used to make RuBP or to build larger carbohydrates. Some are used by the mitochondria in cellular respiration.
Term
NADPH
Definition
The plant equivalent of NADH. It brings electrons from photosystems to the Calvin cycle. It is never used up in reactions, it just changes from NADPH to NADP+.
Term
Light
Definition
Electromagnetic waves. Light behaves as a wave and as a particle, photons. Can have different wavelengths. Visible light is between 380 micrometers (violet) and 750 micrometers (red). The shorter the wavelenth, the more energy.
Term
Burdock Fruit
Definition
Has tiny hooks that attach to fur or clothing to facilitate animal seed dispersal. The inspiration for Velcro.
Term
Mountain Bark Beetle
Definition
An example of global warming. It used to die in the winter but now it doens't because it isn't cold enough. Instead it is overpopulating and killing trees.
Term
Global Warming
Definition
The ice caps are melting, causing even faster heating since ice reflects heat.
The climate is always changing. The Sahara used to be lushly vegetated. Time frame is important when talking about climate change.
Will cause erratic weather patterns, floods, droughts, hurricanes, water stress, decrease in arable land, drop in yields, loss of food security.
Term
Climate
Definition
Long term averages in meteorological factors over large areas.
Term
Weather
Definition
Short term meteorological factors over small areas.
Term
Dirty Thirties
Definition
In the 1930s the prairies were very dry and were a big "dust bowl".
Term
Dickensian Winter
Definition
In the time of Charle's Dickens (early 1800s) winters were much much colder.
Term
The Little Ice Age
Definition
1350-1850 The "Dark Ages". Colder climate. Caused the North American fur trade to be in high demand.
Term
Vinland
Definition
"Grape Land". What Lief Ericson called Newfoundland. This implies that the climate was much warmer when he was there. During this time, Greenland was a green pastured land.
Term
Greenhouse Effect
Definition
Greenhouse gases reflect heat back to Earth, warming the planet.
Term
Greenhouse Gases
Definition
Carbon dioxide, methane, nitrous oxide, and water vapor among others.
Term
Cocoa Production
Definition
Land suitable for cocoa cultivation is shrinking. Chocolate prices predicted to rise.
Term
Africa
Definition
80% of population relies on wood or charcoal fuel, causing deforestation. Malaria is spreading.
Term
Rice Yield
Definition
High nighttime temperatures decrease yields.
Term
Wheat Yields in Europe vs. Canada
Definition
Higher in Europe because the climate is wetter and cooler.
Term
Cool Season Vegetables
Definition

Edible part is the root, leaves, stems, buds, or immature flowers. Frost tolerant. Can germinate at 4C to 5C. Store in the fridge, except potatoes, because the starches will turn to sugars.

Nitrate is stored in the roots.

Term
Warm Season Vegetables
Definition

Edible part is the fruit. Not frost tolerant. Germinates between 12C to 30C. Store at room temperature.

Nitrate is stored in the leaves.

Term
Vegetable Yields
Definition
Directly related to weather patterns. Growing season, mean temperature, precipitation, day and night temperatures, number of hot days (temperature over 30C). These types of losses cannot be made up for by irrigation or fertilizer.
Term
Regression Analysis
Definition
Independent variable is a solid value pre-decided.
Dependent variable is what is being measured.
Term
P Value
Definition
This value indicates significance. If it is below 0.05, it is significant.
Term
Adaptations to Global Warming
Definition
Reduce CO2 emissions, diversify crops, breed crops for drought resistance, irrigation, mulch, compost, protect forests, use animals for food security.
Term
Forest Protection
Definition
Copenhagen decided to give $3.5 billion into protecting the world's forests. This increases biodiversity.
Term
Onion Yields
Definition
Corona and Prince have most consistent yields. Yields increase with number of days with rain. Decrease with number of hot days.
Term
Viruses
Definition
Metabolically inert. Do not eat or need oxygen. DNA or RNA in a protein coat. Use living organisms to reproduce. Submicroscopic. Usually harmful, but some are beneficial such as viruses of tulips that causes the colours to be separated, causing a beautiful pattern
Term
Drip Irrigation
Definition
Used in dry climates to preserve water. A bucket is hung with a tube with holes in it next to plants. Conserves water.
Term
Field Capacity
Definition
The maximum amount of moisture soil can contain.
Term
Cucurbits
Definition
A family of vegetables that requires 15 to 20 visits from bees in order to be fully pollinated, or else the fruit will be small or deformed.
Term
Bees
Definition
Make $14.6 billion a year from honey and pollination. Considered livestock. They communicate to each other by dancing. One hive collects 66 pounds of pollen a year. Honey is made from nectar.
Term
Almonds
Definition
Require bees to produce nuts. However, their nectar is low quality and bees will only pollinate them if that is the only thing around to pollinate.
Term
Queen Bee
Definition
The only female bee that reproduces. Diploid, forms from fertilized eggs.
Term
Worker Bee
Definition
Most bees are worker bees. They are female bees that pollinate, make honey, care for eggs, larvae, and pupae, as well as protect the hive. Diploid, form from fertilized eggs but are infertile.
Term
Drone Bee
Definition
A male bee. He fertilizes the queen and then is kicked out of the hive and quickly dies. Haploid, forms by parthenogenisis.
Term
Colony Collapse Disorder
Definition
CCD
When worker bees just mysteriously vanish. Possible causes: global warming, low plant diversity, stress from travel, pesticides, diseases.
Term
Bee Decline
Definition
Bees not surviving the winter. On the rise. Could be because of bee stress or global warming.
Term
Varroa Mite
Definition
A mite that spreads viruses in bees. Some individual bees can resist them.
Term
Nosema Ceranae
Definition
A fungus that harms bees.
Term
Peptidoglycan
Definition
A sugar polymer in the cell wall of bacteria.
Term
Conjugation
Definition
Plasmid DNA transfer between bacteria.
Term
European Foul Brood
Definition
Bacterial infection of a bee larvae, causing the larvae to be corn yellow.
Term
Nutrition
Definition

Used by animals for energy, building blocks, and regulatory molecules. Acquisition, ingestion, digestion, absorption, metabolism, and waste disposal. Nutrients are minerals, vitamins, carbohydrates, proteins, or lipids. Eating too little, too much, or the wrong combinations of these things can cause health problems.

Exact human nutritional needs are hard to measure, especially in children because of ethics. Needs may vary person to person. Studies must be on nutritional defects or epidemics.

Term
Elements of the Body
Definition
Main elements: C, N, O, H
Minor elements: Ca, Na, Cl, Mg, P, K, S, Cr, Co, Cu, F, I, Fe, Mn, Mo, Se, Zn
Term
Macronutrients
Definition
1 to 1000 grams are required each day.
Term
Micronutrients
Definition
10^-12 to 10^-3 grams are required each day.
Term
Minerals
Definition
A nutrient. Inorganic materials. Maintain protein structure, used as ionic substances for controlling charges, in the electron transport chain, cofactors in metabolism, used in structural compenents (shells, bones, used as signal messengers.
Term
Vitamins
Definition
Organic molecules needed in small amounts. You die if you don't eat them. 13 essential vitamins for humans. Fat soluble or water soluble. Coenzymes, participate in redox reactions, precursors to other molecules, hormones, embryo development. If the diet is unbalanced in the 13 vitamins, supplements should be taken, although massive amounts may be harmful.
Term
Pigment
Definition
A substance that absorbs like of certain wavelengths. Must be a particular wavelength of light. Causes pigment to appear a certain colour. When a photon hits a pigment, it is elevated to a higher energy state (electrons move up an orbital). This is very unstable. Energy is usually emitted as light or heat.
Term
Chlorophyll a
Definition
A pigment. Participates directly in light reactions in photosynthesis. Absorbs violet-blue and red light; reflects blue-green light.
Term
Chlorophyll b
Definition
A pigment in light reactions in photosynthesis. Reflects olive green light.
Term
Carotenoids
Definition
Pigments in light reactions in photosynthesis. Absorb blue-green light; reflect yellow or orange light. Absorb harmful excessive light energy, preventing harm to the plant. Also in human eyes.
Term
P680
Definition
The chlorophyll a at the reaction center of Photosystem II. Absorbs 680 micrometer wavelengths.
Term
P700
Definition
The chlorophyll at the reaction center of Photosystem I. Absorbs 700 micrometer wavelengths.
Term
Photosystem II
Definition

When light hits a pigment in PS I the excited state is passed like a hot potato around until it reaches P680. P680 passes the electron to the primary electron acceptor, becoming P680+. In the reaction centre, a catalyst breaks water, releasing two electrons, two H+ ions, and one oxygen atom. The two electrons are returned to the P680 pair. The H+ ions are pumped into the thylakoid space. The oxygen is released into the air. The excited electron moves down the electron transport chain to photosystem II.

Its half life is 2 hours. Constantly being replaced. Moved to the non-stacked region of thylakoid and repaired.

Term
Photosystem I
Definition
When light hits a pigment in PS II the excited state is passed around until it reaches P700. P700 passes the electron to the primary electron acceptor, becoming P700+. P700+ fills its electron holes with the electron passed to PS II down the electron transport chain. The excited electron passes down a second electron transport chain ending in ferredoxin (Fd) that does not create a proton gradient. At the end NADP+ is turned into NADPH which is released into the stroma.
Term
Cyclic electron flow
Definition
Occurs in some photosynthetic bacteria, including purple bacteria and cyanobacteria. PS II is present, but not PS I. ATP is created, but not NADPH. This is good in low-light situations.
C4 plant bundle-sheath cells practice it to provide enough ATP for PEP production.
Term
Rubisco
Definition
The cube-shaped enzyme that catalyzes the attachment of CO2 to RuBP. The most common protein found in plants. So abundant because its reaction time is very slow.
Term
C3 Plants
Definition
Plants in which rubisco fixes CO2 to RuBP. Rice, wheat, soybeans. On hot, dry days the stomata close to preserve water, reducing CO2 intake, causing photorespiration.
Term
Photorespiration.
Definition
Occurs in C3 plants. On hot, dry days, the stomata are closed, and CO2 is scarce. Photorepsiration occurs. Instead of binding CO2, rubisco binds O2 to RuBP, making a 2-carbon compound instead of G3P. This compound is converted into CO2 in peroxisomes and mitochondria. This consumes ATP and decreases sugar production.
This process is a relic from a time when there was little O2 in the air, and it didn't matter if this happened. Nowadays there is so much O2 photorespiration is always occurring at least a little bit.
It protects plants against too much sunlight.
Term
C4 Plants
Definition

CO2 is pumped to bundle-sheath cells, where Calvin cycle takes place. Sugarcane, corn, other members of the grass family. More efficient use of nitrogen due to less need for rubisco. Have bundle-sheath cells around their leaf veins. All Calvin cycles occur here.

1. In the mesophyll cells, PEP carboxylase enzyme attaches CO2 to PEP, creating a 4-carbon compound oxaloacetate.

2. This is exported to the bundle-sheath cells through plasmodesmata.

3. In the bundle-sheath cells, CO2 is released from oxoalacetate and used in the Calvin cycle, releasing pyruvate, which is returned to the mesophyll. In the mesopyll ATP is used to turn pyruvate into PEP. To generate this ATP, the bundle-sheath cells undergo cyclic electron flow. Advantageous in hot arid climates.

Term
Bundle-Sheath Cells
Definition
Tightly packed cells around the leaf veins of C4 plants. The Calvin cycle only occurs in bundle-sheath cells of C4 plants. Oxaloacetate is delivered from mesophyll cells via plasmodesmata. CO2 is released, entering the Calvin cycle. Pyruvate is returned to the mesophyll.
Only have PS II. Must do cyclic electron flow.
Term
PEP carboxlase
Definition
An enzyme in C4 plant mesophyll cells that fixes CO2 to PEP, making oxaloacetate. It has a higher affinity for CO2 than rubisco, and it cannot fix O2.
Term
Succulent
Definition
A plant that stores water. Cacti, pineapple, et cetera. Open their stomata at night and close them in the day: opposite of other plants. CO2 is fixed using CAM.
Term
CAM
Definition
Crassulcean Acid Metabolism Occurs in succulents and xerophytes. CO2 is fixed at night (when stomata are open) into organic acids. This is stored in vacuoles until morning, when CO2 is released to enter the Calvin cycle.
Term
Microsporocyte
Definition
Also called the microspore mother cell. A diploid cell that undergoes meiosis, forming 4 haploid microspores.
Term
Spore Wall
Definition
The outer coat of a pollen grain. Has elaborate patterns unique to the species.
Term
Pollen Tube
Definition
A structure created by the tube cell of a pollen grain once it lands on a stigma. It grows down the style to the ovary. Grows very quickly.
Term
Integuments
Definition
Layers of protective tissue surrounding the megasporangium that develop into the seed coat.
Term
Megasporocyte
Definition
Also called the megaspore mother cell. A diploid cell that undergoes meiosis, forming 4 haploid megaspores.
Term
Fly Pollination
Definition

Pollen is tranfered from one plant to another via flies. The flowers are red and fleshy and have an odour like rotten meat. Flies mistake the flower for a rotting corpse and lay their eggs on it. They become dusted with pollen in the process. The eggs die when they hatch.

Term
Bat Pollination
Definition
Pollen is transfered from one plant to another via bat. The flower is light coloured and scented to attract bats at night when they are active. The bat feeds on the nectar and pollen.
Term
Suspensor
Definition
The string of cells formed by the basal cell that connect the embryo to the parent plant and imports nutrients.
Term
Pericarp
Definition
The peel or skin of the fruit. Develops from the ovary wall.
Term
Simple Fruit
Definition
Form from the carpel(s) of one flower. Dry simple fruits include pea pods. Fleshy simple fruits include nectarines.
Term
Aggregate Fruit
Definition
Forms from a single flower with more than one carpel. Each carpel forms a small "fruitlet". They cluster together on a single resceptacle. Raspberries.
Term
Multiple Fruit
Definition
Develops from an inflorescence.  As the walls of the ovaris thicen, they fuse together making one giant fruit. Pineapple.
Term
Bee Pollination
Definition
Pollen is tranfered from one plant to another via bees. Bees rely on nectar and pollen for food. 65% of angiosperms rely on insects. The flowers are brightly coloured (blue or yellow) and scented. Some have ultraviolet "landing strips" to guide bees.
Term
Moth Pollination
Definition
Pollen is transfered from one plant to another via moths. The flowers are yellow or white and scented to attract the moths at night, when they are active. The moths feed on the pollen or nectar. Some moths plant their eggs in the plants ovary and the larvae feed on the seeds.
Term
Butterfly Pollination
Definition
Pollen is transfered from one plant to another via butterflies. The flowers are brightly coloured and scented. The butterflies feed on the nectar or pollen.
Term
Bird Pollination
Definition
Pollen is transfered from one plant to another via birds. The birds feed on the nectar. The flower is brightly coloured (red or yellow) but not scented as birds have a poor sense of smell. Often the nectaries are shaped perfectly for the pollinator's beak.
Term
Ripeness
Definition
A fruit ripens at the same time as the seeds are fully developed. In dry fruits the fruit tissues dry completely out. In fleshy fruits hormones trigger the fruit's pulp to become soft by digesting cell walls in the fruit, making it edible. The colour of the fruit changes to become colourful. The fruit becomes sweet as starches are converted to sugars. This is to attract potential seed-spreaders.
Term
Water Seed Dispersal
Definition
Fruits are large and buoyant. They can sruvive months to years at sea. Coconuts.
Term
Wind Seed Dispersal
Definition
Fruits are light and have wind capturing structures like wings or parachutes. Some tumble along the ground releasing seeds. Includes maple, dandelion, and tumbleweed.
Term
Animal Seed Dispersal
Definition
Fruits use animals to disperse their seeds. Some have spikes or hooks and attach to fur or clothig (burdock, puncture vine). Some are edible and encourage squirrels to burry them for the winter, but they forget (nuts). Some are edible and the seeds require digestive fluids to activate them and they germinate in the feces.
Term
Fragmentation
Definition
When part of a plant may grow into an exact replica of the plant. A form of asexual reproduction.
Term
Organic Molecule
Definition
A molecule containing the element carbon.
Term
Fat Soluble Vitamin
Definition
A vitamin not soluble in water. A, D, E, and K. You can overdose on them. In absorption they are loaded into the lacteal system. Builds up in the liver and can reach toxic levels.
Term
Water Soluble Vitamin
Definition
A vitamin soluble in water. Cannot overdose on it. In absorption they are loaded into the bloodstream. Any extra dosage is excreted in the urine.
Term
Linoleic Acid
Definition
(18:2, n-6) An omega-6 fatty acid with 18 carbons and 2 double bonds (kinks). The first kink is at carbon number 6 counting from the tail end of the chain.
Term
Arachidonic Acid
Definition

(20:4, n-6) An omega-6 fatty acid with 20 carbons and 4 double bond kinks. The first kink is at carbon 6 counting from the tail end of the chain.

Essential to all members of the cat family. Meat is high in arachidonic acid. Cats cannot survive on a vegetarian diet or on dog food.

Term
Alpha Linoleic Acid
Definition
ALA. (18:3, n-3) An omega-3 fatty acid with 18 carbons and 3 double bonds. The first kink occurs on carbon 3 counting from the tail end of the chain.
Term
Eicosapentaenoic Acid
Definition
EPA. (20:5, n-3) An omega-3 fatty acid with 20 carbons and 5 double bonds. The first kink is at carbon 3 counting from the tail end of the chain.
Term
Docosahexaenoic Acid
Definition
DHA. (22:6, n-3) An omega-3 fatty acid with 22 carbons and 6 double bonds. The first kink is at carbon 3 counting from the tail end of the chain.
Term
Cholesterol
Definition
A steroid found in cell membranes. It adjusts cell membrane fluidity.
Term
Essential Amino Acids
Definition

Amico acids that humans cannot synthesize in the body, and must be obtained through the diet. 

Tryptophan, Valine, Threonine, Isoleucine, Leucine, Lysine, Phenylaline, and Methionine.

(TV TILL Past Midnight).

Methionine converts into cycstein. Infants also require histidine. Sheep need high cystein in their diet because they can't make this conversion.

If you don't have enough protein in the diet your body will start to eat itself. Animal proteins in meat, eggs, and milk are complete sources that contain all 8. Most plant proteins are incomplete, a variety of plants must be eaten. Some animals have ways to store amino acids in storage proteins.

Term
Vitamin K
Definition
Phylloquinone. Fat-Soluble. A  co-enzyme. Helps turn prothrombin into thrombin, which is important for blood clotting. Found in green vegetables, tea, and is produced by colon bacteria. Deficiency causes delayed blood clotting.
Term
Vitamin B3
Definition
Niacin. Water-soluble. Imortant for making NAD+. Found in nuts, meats, and grains. Deficiency effects the whole body, but the brain is the first symtom. Confusion, delirium, skin and gastrointestinal lesions.
Term
Vitamin B5
Definition
Pantothenic Acid. Water-soluble. Component of Coenzyme A from glycolysis and the citric acid cycle. Found in meat, dairy, whole grains, fruits, and vegetables. Deficiency causes fatigue, numbness, tingling in hands and feet.
Term
Vitamin D
Definition
A steroid, a hormone, and a vitamin; acts like all three. Fat-soluble. Essential in humans but can be made in the skin using sunlight. Light skin is better at making vitamin D. Evolved in cold places with less sunlight and more clothing. Dark skin is better at reducing skin cancer. Evolved in warm places with more sunlight and less clothing. Inuit people have high vitamin D in their diet from fish oils. Also found in dairy and egg yolk. Increases calcium in bones and cells; helps absorb calcium from the digestive system.
Term
Vitamin A
Definition
Retinoic acid or retinol. Fat-soluble. Consumed as beta-carotene. The body will only convert to vitamin A if it needs to. Important for vision and epithelial tissues. Found in dark green or orange vegetables and fruits and dairy. Deficiency, common in areas where rice is a major staple food, causes blindness, skin disorders, impaired immunity. The leading deficiency in the world. 1 to 2 million children die each year. Rice is low in beta-carotene, but Golden Rice (a GMO) is not.
Term
Cellulase
Definition
The enzyme that digests cellulose. Animals do not produce it. It is produced by bacteria in the herbivore's gut.
Term
Metabolism
Definition
Sum of all chemical reactions in a cell or organism.
Term
Kinetic Energy
Definition
The energy of motion.
Term
Potential Energy
Definition
Energy stored in objects due to its location or chemical structure. Example: a boulder on the top of a cliff.
Term
Heat
Definition
The random movement of atoms. It is a form of kinetic energy. It has the highest amount of entropy of any form of energy.
Term
Chemical Energy
Definition
Energy stored in molecules in its molecular structure. It is a form of potential energy.
Term
Anabolic Reaction
Definition
Also called endergonic reaction. An "uphill" reaction. The reactants have less potential energy than the products. Energy is added. Requires energy. Not energetically favourable. Larger molecules are made from smaller molecules.
Term
Activation Energy
Definition
EA. The energy needed to get a catabolic reaction going. Can be lowered by enzymes.
Term
FADH2
Definition
An electron carrier used in cellular respiration. Goes back and forth between FADH2 and FADH+. It contains vitamin B2.
Term
Omega-6 Fatty Acid
Definition

A fatty acid where the first kink occurs on the 6th carbon counting from the tail end of the chain.

Include arachidonic and linoleic fatty acids.

Term
Omega-3 Fatty Acid
Definition

A fatty acid where the first kink occurs on the 3rd carbon counting from the tail end. Includes alpha linoleic fatty acid, EPA, and DHA.

Very important for brain development. People may have evolved large brains due to eating fish, high in omega-3s. Breast milk contains omega-3 fatty acids.

Term
Trans Fatty Acid
Definition
In nature, most fatty acids are cis. Tras fatty acids are a result of hydrogenating vegetable oils to make them solid (margarin). They are very bad for you, worse than saturated fats.
Term
Estrogen
Definition
A "female" sex hormone. Dominant in females, but present in males as well. There are many types of estrogens, the most important one being estradiol. Responsible for development of secondary female characteristscs.
Term
Passive Transport
Definition

When molecules flow in or out of a cell via transport protein while following their concentration gradient. Called facilitated diffusion. No ATP is consumed.

Sometimes no protein is needed. This is called diffusion.

Term
Active Transport
Definition
When molecules move in or out of a cell via transport proteins while flowing against their concentration gradient. ATP is consumed.
Term
Photoautotroph
Definition
An organism that takes energy from light and carbon from CO2 in the air. Plants.
Term
Chemoautotrophs
Definition
Organsisms that take energy from inorganic molecules and carbon from CO2. Sulfur vent bacteria.
Term
Chemoheterotrophs
Definition
Organsims that take energy and carbon from organic compounds. Animals, bacteria, fungi.
Term
Mechanical Digestion
Definition
The physical breakup of nutrients. Chewing. Teeth, gizzards, stomach contractions. Food surface area increases, allowing for more enzyme action.
Term
Chemical Digestion
Definition
The chemical breakup of nutrients with enzymes. Macromolecules are hydrolized into smaller molecules.
Term
Suspension Feeder
Definition
Commonly aquatic animals. Animals that eat food that is caught from the water in its immediate surroundings. Cilia sweep the food into their mouths into a film of mucus. Clams, oysters.
Term
Substrate Feeders
Definition
Animals that live on or in the food they eat. Caterpillars live on leaves. Fly maggots burrow into animal carcasses.
Term
Fluid Feeders
Definition
Animals that suck liquid nutrients out of larger organisms. Mosquitoes suck blood from animals. Aphids suck phloem from plants. Hummingbirds suck nectar, but also pollinate the flower.
Term
Bulk Feeders
Definition
Animals that eat meals. Most animals. Often have food-capturing structures (tentacles, pincers, claws, teeth, et cetera). Snakes cannot chew and must swallow entire animals whole.
Term
Omnivore
Definition
An animal that eats other animals as well as plants. Alimentary canal is mid-length, having the ability to digest cellulose as well as being optimal length for meat digestion.
Term
Carnivore
Definition
An animal that eats other animals. Alimentary canal is relatively short. Meats do not require much digestion. Have large canines for tearing flesh. Jaws move up and down. Small masseter muscles, large temporalis muscle.
Term
Herbivore
Definition
An animal that eats plants. Alimentary canals are very long and may contain extra organs for fermentation. Plant material is difficult to digest due to cell walls. Teeth are high-crowned as they are prone to wear from chewing rought material. Jaws move side to side. Small temporalis muscle, large masster muscle.
Term
Frugivore
Definition
An animal that eats fruit.
Term
Detritivore
Definition
An animal that eats organic material from soil or dead plants or animals.
Term
Parasite
Definition
An animal that feeds off another organism while it is still alive, harming it, perhaps killing it.
Term
Extracellular Matrix
Definition
The fluid on the outside of a cell. Contains peptoglycan and collagen that holds the cells together.
Term
Energy
Definition
The capacity to cause change. There is potential energy and kinetic energy.
Term
First Law of Thermodynamics
Definition
Energy cannot be created or destroyed. Only moved around or transformed into a different kind of energy.
Term
Second Law of Thermodynamics
Definition
Entropy is always created. Some energy is always lost as heat. There is always less energy to do work with at the end than there was at the begining.
Term
Co-Enzyme
Definition
A chemical that helps enzymes work. Some vitamins are co-enzymes.
Term
Intracellular Digestion
Definition
When digestion occurs in individual cells by lysosomes. Food must be engulfed or imported by phagocytosis (solids) or pinocytosis (liquids) into food vacuoles. Then lysosomes fuse with the vacuole, starting chemical digestion. In animals only spounges digest this way.
Term
Extracellular Digestion
Definition
When digestion occurs outside the cells in a compartment of the organism. Larger food can be eaten than in intracellular digestion. Enzymes are released, food broken down, and then absorbed.
Term
Chylomicron
Definition
A small water-soluble package of fats with a coating of phospholipids, cholesterol, and proteins. It enters the lacteal from the small intestine.
Term
Lacteal
Definition
A vesle of the lymph system. Takes up chylomicrons from the small intestine. They lead to larger vessels of the lymph system and eventyally to the blood stream.
Term
Cutting
Definition
When a fragment of a plant is cut off and it then forms a callus and then grows into an identical plant. A form of asexual reproduction. Usually the stem or root is cut. African violets can reproduce from cuttings of the leaf. Barlett pairs and many apples are clones that have been asexually reproduced via cuttings for decades.
Term
Asexual Reproduction In Vitro
Definition
A small piece of a plant is cultured in growing medium with nutrients nd hormones.  The callus formed can be cut up to make thousands of exact copies. Transgenic genes can be introduced at this time.
Term
Protoplast Fusion
Definition
The cells of two plants are treated so that the cell wall is removed. They may then fuse together and combine DNA even if the two plants are normally sexually incompatible. The protoplasts then form cell walls and continue growth.
Term
Plant Domestication
Definition
Occured around 10,000 years ago. Unknowingly bred plants to have certain traits such as the seed staying on the plant (much easier to harvest) and better-tasting plants.
Term
Root
Definition
The part of a plant that is in the ground and absorbs water and nutrients. Root cells have root hairs that increase surface area. The epidermis is hydrophilic and attracts water. In root hairs soil solution (water and dissolved mineral ions) is absorbed. Everywhere else it flows in the extracellular spaces to the root cortex. Active transport facilitates the absorptions of minerals such as K against their concentration gradient.
Term
Plasmodesmata
Definition
A passage between plant cell walls that allow direct transfer of cytoplasmic material.
Term
Endodermis
Definition
The layer of cells surrounding the root cortex. Has plasmodesmata allowing in minerals and water from the root cells that traveled to the root cortx in the symplast. Minerals that traveled in the apoplast are met by the Casparian strip and stopped.
Term
Apoplast
Definition
The extracellular spaces between root cells. Water and minerals can travel to the root cortex but are stopped by the Casparian strip. They can enter the root cell only by going back and crossing a selective membrane in the endodermal cells.
Term
Symplast
Definition
The inside of cells in the root. Water and minerals can pass to the root cortex through plasmodesmata and are put directly into the root cortex.
Term
Casparian Strip
Definition
A waxy barrier made from suberin that surrounds the endodermis. It stops minerals and water that travelled to the root cortex in the apoplast, but allows minerals and water that travelled in the symplast. Keeps unneeded or toxic substances from spreading to the rest of the plant. Also prevents the xylem from emptying back into the root.
Term
Xylem
Definition

Water transporting vessels in plants. Dead cells that lack cell contents and are therefore part of the apoplast. The root vascular and endodermal cells dump their water and mineral contents into the apoplast using active transport. The Casparian strip prevents it from leaking back into the soil. Instead it pools in the xylem (now called xylem sap) and is delivered to the shoot via bulk flow. This mode of transport is much faster than diffusion.

Xylem are elastic. When transpiration is especially high, they shrink in diameter, causing a measurable decrease in tree diameters on hot, dry days.

Term
Transpiration
Definition

Water loss from the leaves. Facilitates the bulk of xylem flow from the roots. The air spaces in the mesophyll become moist from water brought by the xylem. This water then evaporates and leaves through the stomata. The water film between cells becomes concave, generating surface tension that drives xylem sap flow.

Water loss is controled by guard cells. The evaporation cools the leaves, preventing the protiens from denaturing.

Term
Xylem Sap Flow
Definition
Xylem sap is brought to the top of the plant by a combination of root pressure, leaf transpiration, and the properties of water adhesion and cohesion. If root pressure is greater than leaf transpiration, guttation occurs. Leaf transpiration and water cohesion "pull" the water up the xylem.
Term
Guttation
Definition
When root pressure is greater than leaf transpiration. Small droplets form on the edge of the leaf. Not dew, it is extra water exiting the leaf. This only occurs at night when transpiration is low.
Term
Adhesion
Definition
The tendency of water to stick to other polar substances. Water is adhesive to the cellulose molecules of xylem walls, facilitating xlem sap flow.
Term
Cohesion
Definition
The tendency of water molecules to stick to other water molecules. Due to hydrogen bonding. This facilitates xylem sap flow.
Term
Cavitation
Definition
The formation of air bubbles inside xylems. Stops the xylem sap flow since the cohesive chain in water is broken. Occurs more in wide xylem, especially during a drought or when it is very cold and the sap freezes. The rapid expansion of air bubbles produces a very quiet clicking noise that can be heard with a microphone. The empty xylem may be refilled or sometimes it is left empty because it is old and becomes part of the outer wood in trees, providing support.
Term
Guard Cells
Definition
Two cells around a stomata that open and close the stomata to regulate CO2 intake as well as water loss. The cells have radially arranged microfibrils. When the cells uptake water from other cells or from an ion gradient (usually K+) they becomes fat and the microfibrils push them both into a bent shape, opening the stomata. K+ intake is triggered by blue light detected by receptors in the membrane. When the cell loses water, they becomes skinny and the cells flatten, closing the stomata. This may be in response to ABA.
Term
Aquaporin
Definition
A transport cell in the cell wall of organisms that lets water in or out of the cell.
Term
Abscisic Acid
Definition
ABA. A plant hormone that emits from the roots when there is water deficiency to signal the closing of stomata to prevent water loss.
Term
Wilting
Definition
Water depletion in the leaves. Occurs with water deficiency. Can be slowed by the closing of the stomata, but only for short water deficiencies. When transpiration stops, the leaf heats up and the proteins can be denatured.
Term
Xerophyte
Definition

Plants adapted to dry conditions. Have CAM photosynthesis.

They may produce leaves only after a heavy rainfall (ocotillo). The stomata may be inside crypts that protect it from winds (oleander). It may have light-coloured structures such as bristles to reflect the sun (old man cactus). Leaves are usually much reduced in size, photosynthesis mostly in the stem. The stems may be fleshy and store water for long dry periods. Some have very deep taproots to acess the water table.

Term
Plant Water Needs
Definition
Water is needed for photosynthesis not only as a chemical input, but because water opens the stomata, allowing CO2 to enter. Transpiration also cools the leaf, preventing denaturing of proteins.
Term
Phloem
Definition
Specalized cells that facilitate the translocation of sugars from photosynthesis to other parts of the plant. Long seive tubes connected by seive plates. Phloem sap is very high in sugars and is thick and syrupy. May also contain amino acids, hormones, and minerals. Moves from sugar source to sugar sinks. Direction of flow depends on the fastest route from source to sink. All flow is driven by positive pressure of the sugar sources.
Term
Sugar Sink
Definition

A site on a plant that takes sugars from the phloem. Growing parts (roots, buds, stems, fruits). Storage organs when stockpiling nutrients in the summer.

Sugar is recieved from the nearest sugar source.

Term
Sugar Source
Definition

A part of a plant that is putting sugar into the phloem. Any part that is green. Leaves and sometimes stems. May also be storage organs like the roots, especially in the spring.

At the source sugars may travel to the phloem via symplast or apoplast or a combination. Active transport may be required to load sugar into the phloem.

Term
Self-Thinning
Definition
When a plant aborts sugar sinks such as flowers, seeds, or fruits because the sugar sources are not providing enough sugar. Sometimes farmers prune plants to get larger but fewer fruits.
Term
Rhizobacteria
Definition
Soil bacteria especially abundant in the areas of the soil where plant roots are. Species representation depends highly on plant species nearby. They are in a symbiotic relationship with plants. The roots secretes up to 20% of its sugars and nutrients which the bacteria eat. In return the bacteria provide growth-promoting chemicals, antibiotics to protect them from diseases, absorb toxic metals, or make nutrients for the plant. Rhizobacteria increase crop yields.
Term
The Nitrogen Cycle
Definition

No mineral is more limiting to plant growth than nitrogen. It is required in large amounts for photosynthesis. Nitrogen is abundant in the atmosphere as N2. It has a triple bond, making it impossible for plants to use it. Must be converted to NO3- by nitrogen fixation. The only organisms that can do this are bacteria.

Most soil nitrogen comes from bacterial activity from ammonifying bacteria, nitrogen-fixing bacteria, and nitrifying bacteria from the genus Rhizobium.

Term
Ammonifying Bacteria
Definition
Soil bacteria that convert release ammonia (NH3) by breaking down organic compounds in humus.
Term
Nitrogen-Fixing Bacteria
Definition
Turn nitrogen from the air (N2) into NH3. In soil, this forms NH4+.
Term
Nitrifying Bacteria
Definition
Bacteria that turn NH4+ from the soil first into nitrite (NO2-) to nitrate (NO3-), the form of nitrogen usable by plants.
Term
Denitrifying Bacteria
Definition
Soil bacteria that turn nitrate (NO3-) into gaseous nitrogen (N2) which is released into the air.
Term
Rhyzobium
Definition

The genus of bacteria that form symbiotic relationships with legumes. The plant provides a home and food suply. The bacteria supply usable nitrogen. Some are free-living but most live in the nodules of legumes where they form bacteroids which are contained inside vacuoles of legume root cells. Species are specific to specific legume species.

Rhizobium make much more usable nitrogen than industrial fertilizers. It provides the right amount of nitrogen at the right times with no costs to farmers. It also enriches the soil once the legume is done growing.

Term
Nodule
Definition

A swolen area of a legume root containing Rhyzobium bacteroids inside the cell vesicles. The bacteria require anaerobic conditions, but the surrounding plant cells need increased oxygen for cellular respiration; this is provided by leghemoglobin. This chemical makes the nodule appear red when opened.

In nodule development, first chemical signals are used to locate proper rhizobium bacteria in the soil. The root grows a thread which is infected by the bacteria. The infected threat enters the root cortex where the bacteria is surrounded by cells. The bacteria form bacteroids. The nodule forms, still connected to the root cortex. It has a lining of lignin cells to prevent oxygen from entering the nodule.

Term
Leghemoglobin
Definition
A chemical similar to hemoglobin containing iron. It appears red. It reversibly binds to oxygen. It supplies anaerobic conditions to rhizobium bacteria in legume nodules while providing oxygen for cellular respiration to the plant cells.
Term
Legume
Definition
A plant with root nodules containin rhizobium nitrogen-fixing bacteria. Peas, soybeans, alfalfa, peanuts. They are a good in between crop in crop rotation since the bacteria enrich the soil. Often used as a green manure.
Term
Azolla
Definition
A cyanobacteria found in rice paddies. It fixes nitrogen, benefitting the rice.
Term
Mycorrhizae
Definition
A fungus with in a symbiotic relationship with plants. The plant provides it with sugars. The fungus provides water, phosphates, minerals, growth stimulants, and anti-biotics which it is better at obtaining. Important in early plants first growing onto the land. Ectomycorrhizae and arbuscular mycorrhizae. It is present in the soil, and infects seeds. Lives beter in low phosphorus soils. Attach to other plants and fungi. Without fungal partners nearby, mycorrhiza will be innefective and a drain on the plant.
Term
Ectomycorrhizae
Definition
A mycorrhizae that forms a dense sheath around the plant's root. 10% of plants have this, including many trees. The hypae extend far out into the soil as well as into the root apoplast spaces, providing large surface area for nutrient exchange. Roots are thicker, shorter, more branced, and lack root hairs.
Term
Abuscular Mycorrhizae
Definition

Mycorrhizae that do not form mantles around the root, but break the cell walls of the root cortex cells, pressing against the cell membrane without breaking it, forming arbuscules (tree-shaped formations). This highly increases surface area for nutrient exchange.

They look like "normal" roots, but are not. 85% of plant families have it.

Term
Epiphyte
Definition
A plant that lives on another plant. It does not harm the host plant, they are only anchored to it. It absorbs water from the rain.
Term
Parasitic Plants
Definition
Plants that feed off of other plants. They tap into the host plant or its associated mycorrhizae, harnessing water and nutrients. Some are so dependant on their host that they lack chlorophyll, but they are still plants. Dodder, Indian pipe, and mistletoe.
Term
Carnivorous Plants
Definition
Plants that photosynthesize, but supplement their nutrients by capturing insects using various highly modified structures. Pitcher plants, Venus flytraps.
Term
Etiolation
Definition
The growth of pale, leafless shoots that grow through the ground in search of the surface. Minimize water loss and energy use (chloropyll takes lots of energy to make). Leaves would make breaking to the surface difficult. Once light is found, de-etiolation occurs. Potato shoots.
Term
De-Etiolation
Definition
Also called greening. When etiolation shoots reach light the stem elongation slows, leaves form, roots develop, and chlorophyll is made. This is triggered by phytochrome. Proteins involved in photosynthesis and chlorophyll production are activated. Hormones that cause stem elongation are slowed.
Term
Phytochrome
Definition
A pigment/protein that is sensitive to the quantity, wavelength, quality, and direction of light, triggering de-etiolation, seed germination, and shade avoidance. It is a receptor protein located in the cytosol. It is two identical subunits together. Each subunit has a non-protein chromophore in its photoreceptor activity zone and a kinase activity zone.
Term
Second Messengers
Definition
Small molecules that ampify very small or weak environmental triggers in plants. Includes Ca+ ions and cGMP. They only trigger particular cell activites, such as enzyme activity. This trigger is either post-transactional modification, or transcriptional.
Term
Calcium
Definition

Caclium ions are released when the plant egg is fertilized, preventing against polyspermy. They are also an important second messenger. Upon phytochrome activation, cytosol Ca+ concentrations increase 10x! This is necessary for de-etiolation.

A mineral found in dairy, dark green vegetables, and legumes. Used in bone and teeth formation, blood clotting, and nerve and muscle function. Deficiency causes impaired growth, and loss of bone mass.

Term
Cyclic GMP
Definition
A second messenger. The enzyme that produces it is activated by phytochrome activation. It is necessary for de-etiolation.
Term
Post-Translational Modification
Definition

The activation of pre-existing proteins by a second messenger. Often the protein is a kinase that is phosphorylated, thus activating it. The phosphorylated protein then phosphorylates another protein, causing a chain-reaction "cascade". This may activade or deactivate genes.

Protein phosphatases can de-phosphorylate the molecules if the environmental trigger is turned off. 

Term
Kinase
Definition
An enzyme that facilitates the passage of energy from ATP to a particular molecule.
Term
Phosphorylation
Definition
The addition of a phosphate group.
Term
Transcriptional Regulation
Definition
When a second messenger triggers trigger specific transcription factor proteins to bind to certain regions of the DNA control transcriptions for protein production. Transcription may be slowed or sped up.
Term
Hormone
Definition

A molecule produced in tiny amounts by an organism and then transported to other parts of the body where it binds to receptor proteins, triggering responses in target tissues.

In animals hormones are delivered by the blood.

In plants hormones are called plant growth regulators. They often do not travel far, and are sometimes made in very large amounts.

Term
Photomorphogenisis
Definition
Changes in plant morphology in response to light.
Term
Action Spectra
Definition
A graph depicting the effectiveness of wavelength of light on certain plant processes.
Term
Blue-Light Photoreceptors
Definition
Photoreceptors that are sensitive to blue light. They control the opening and closing of the stomata, and inhibition of stem elongation once a seedling shoot reaches the surface.
Term
Chromophore
Definition

The non-protein section of a phytochrome that is sensitive to light. It switches back and forth between two isomers. Pr form absorbs red light, Pfr form absorbs far red light; it switches accordingly. The Pr form is the form best used by plants. Sunlight has more far red light than red; it is this ratio that triggers seed germination. 

In darkness Pr gradually becomes dominant, it cannot convert back without light stimulation. Sudden production of Pfr sets biological "clocks".

Term
Plants and Shade
Definition

Shade avoidance phytochromes trigger trees to grow taller to overcome other trees that are shading it.

Plants can be obligate or facultative shade plants or obligates sun plants.

Term
Circadian Rhythm
Definition
A 24 hour cycle in plant movement and/or photosynthesis proteins not effected by light, humidity, or temperature. Timed to the plants "internal clock". Regulated by oscillations in amount and activity of mRNA that transcribe "clock genes". Changing light stimuli can desynchronize the rhythm, similar to jet lag. The clock is set by the sudden increase in Pfr chromophore at sunrise. Relative lengths of night and day set the time of year.
Term
Photoperiodism
Definition

Responses to day and night lengths in plants. Used to detect time of year for plant lifecycles (germination, flowering, leaves, et cetera). Night length is sensed by ratio of Pfr chromophores in the leaves. Sometimes other factors like vernalization also need to be sensed to activate activities.

In flowering there are short-day, long-day, and day-neutral plants. The plants are sensitive to red light, but far red light will undo any of this sensitivity. This may be used to produce flowers out of season. 

Term
Short-Day Plants
Definition
Plants that require long periods of darkness to flower. In nature this also means short days. Flower in the late summer, fall, or winter. Poinsettia, chrysanthemum, soybeans.
Term
Long-Day Plants
Definition
Plants that require short periods of darkness to flower. In nature, this also means long days. Tend to flower in the early spring or summer. Spinach, radishes, lettuce, irises, cereals.
Term
Day-Neutral Plants
Definition
Plants that are neither short-day or long-day plants. The length of the day does not effect flowering. Flower when they reach a certain stage of maturity. Tomatoes, rice, dandelions.
Term
Vernalization
Definition
A cold period a plant needs to be exposed to in order to germinate or flower. This is to ensure it happens only in the spring in nature. Winter wheat requires vernalization.
Term
Gravitropism
Definition
A plant's responses to gravity. Shoots grow up, roots grow down.
Term
Vitamin C
Definition
Ascorbic acid. Water-soluble. An antioxidant. All animals other than primates and guinea pigs have the ability to make Vitamin C in their bodies. The ability was lost from eating too much fruit. Used for making collagen. Found in citrus, fruits, broccoli, tomatoes. Deficiency is called scurvy. Skin and teeth degenerate, wound healing is delayed.
Term
Essential Nutrients
Definition

Nutrients essential for health. There are essential amino acids, fatty acids, vitamins, and minerals.

To make up for lack of minerals in the diet some herbivores lick rocks to obtain salts and minerals. Spiders switch prey to get all their requirements. Young children can die or have impaired mental and physical development if their diet is lacking in protein.

Term
Essential Fatty Acids
Definition
Fatty acids that the body cannot synthesize on its own. Linoleic acid is required for synthesis of phospholipids. Deficiencies are rare --fat is in most foods.
Term
Vitamin B1
Definition
Thiamine. Water-soluble. A coenzme used in removing CO2 from organic compounds. Found in pork, legumes, peanuts, and whole grains. Deficiency is called beriberi. Tingling, poor co-ordination, reduced heart function.
Term
Vitamin B2
Definition
Riboflavin. Water-soluble. A component of FAD and FMN. Found in dairy, meat, enriched grains, and vegetables. Deficiency causes skin lesions especially at the corners of the mouth.
Term
Vitamin B6
Definition
Pyridoxine. Water-soluble. Used in amino acid metabolism. Found in meat, vegetables, and whole grains. Deficiency causes irritability, convulsions, muscular twitching, and anemia.
Term
Vitamin B7
Definition
Biotin. Water-soluble. A coenzyme in the synthesis of fat, glycogen, and amino acids. Found in legumes, vegetables, and meat. Deficiency causes scaly skin, skin inflammation, and neuromuscular disorders.
Term
Vitamin B9
Definition
Folic acid. A coenzyme in nucleic acid and amino acid metabolism. Found in green vegetables, oranges, nuts, legumes, and whole grains. Deficiency causes anemia and neural tube birth defects in the children of pregnant women deficient. To prevent this, US puts folic acid in its bread products.
Term
Vitamin B12
Definition
Cobalamin. Water-soluble. Used in production of nucleic acids and red blood cells. Found in meat, eggs, and dairy. Deficiency causes anemia, numbness, and loss of balance.
Term
Vitamin E
Definition
Tocopherol. Fat-soluble. An antioxidant. Helps prevent damage to cell membranes. Found in vegetable oils, nuts, and seeds. Deficiency causes nervous system degeneration.
Term
Phosphorus
Definition

A mineral found in dairy, meat, and grains. Used in bone and teeth formation, pH balance, nucleotide synthesis. Deficiency causes weakness, loss of minerals from bones, and calcium loss.

In areas with low phosphorus in the soil, herbivores may develop fragile bones.

Term
Sulfur
Definition
A mineral found in proteins from many sources. Used as a component in amino acids. Deficiency causes impaired growth, fatigue, and swelling.
Term
Potassium
Definition
A mineral foun in meat, dairy, fruits, vegetables, and grains. Used in pH balance, water balance, and nerve function. Deficiency causes muscular weakness, paralysis, nausea, and heart failure.
Term
Chlorine
Definition

A mineral found in table salt. Used in pH balance, gastric juice, nerve function, and osmotic balance. Deficiency causes muscle cramps and reduced appetite.

Overdose causes high blood pressure. Common in the US where salt is in most foods.

Term
Sodium
Definition

A mineral found in table salt. Used in pH balance, water balance, and nerve function. Deficiency causes muscle cramps and reduced appetite.

Overdose causes high blood pressure. Common in the US where food is all high in salt.

Term
Magnesium
Definition
A mineral found in whole grains and green leafy vegetables. An enzyme co-facotor. Used in ATP. Deficiency causes nervous system disturbances.
Term
Iron
Definition

A mineral found in meat, eggs, legumes, whole grains, and green leafy vegetables. In hemoglobin and electron carriers. Is an enzyme cofactor. Deficiency is called iron-deficiency anemia. Weakness, impaired immunity.

In Africa well water is high in iron causing overdoses.

Term
Fluorine
Definition
A mineral found in drinking water, tea, and seafood. Used in the maintenance of tooth structure. Deficiency causes increase in tooth decay.
Term
Iodine
Definition
A mineral found in seafood and iodized salt. Used in thyroid hormones. Deficiency causes goiter (enlargement of the thyroid gland).
Term
Malnutrition
Definition

A diet that consistenty fails to supply enough chemical energy and/or enough essential nutrients. Very negative impacts on health and survival.

When there is undernutrition in chemical energy first the body starts to use up carbohydrates and fats in the body, then it uses its own proteins for fuel. Muscles shrink and the brain becomes protein-deficient. Then the animal dies. Even if they survive, some damages are irreparable.

In humans this happens during crises like floods, droughts, wars, or agricultural problems. Sometimes it happens as a result of an eating disorder.

Term
Ingestion
Definition
The first stage of nutrition. Eating. In mammals this occurs at the mouth.
Term
Digestion
Definition
The second step of nutrition. Food is physically and chemically broken up.
Term
Absorption
Definition
The third stage of nutrition. Food molecules pass into the cells.
Term
Elimination
Definition
Also called defecation. The fourth and last stage of nutrition. Undigested material is passed out of the digestive system. Controled by an outer and inner sphyncter and voluntary Valsalva maneuvers (holding breath and clenching abdominal muscles). The need to defecate is signaled by pressure in the large intestine and peristaltic waves. In humans elimination can occur from 12 to 24 hours after ingestion.
Term
Filter Feeder
Definition
Commonly aquatic animals. Animals that have water filtering structures that capture food. Whales use their baleen teeth to capture fish and small animals.
Term
Gastrovascular Cavity
Definition
The digestive compartment in simple animals such as hydra and some flatworms. Digestive enzymes are secreted. Food particles are engulfed and further digested intracellularly. Undigested materia is excreted through the mouth.
Term
Alimentary Canal
Definition

A digestive tube with separate openings for ingesting and elimination. Arranged into specialized compartments so that digestion occurs in a stepwise fashion. There area also accessory glands that produce enzymes. Food moves through the canal by peristalsis, the wavelike squishing of smooth muscles and sphincters.

Carnivores have relatively short alimentary canals; meat is simple to digest. Herbivores have very long alimentary canals; plants take longer to digest due to cell walls.

Term
Mouth
Definition

Also called the oral cavity. The site of ingestion. Mechanical digestion by teeth. Chemical digestion by saliva brought from the salivary glands which are triggered by nervous reflex (may be from learned associations as Pavlov proved).

The tongue is used to make a decision as to wether the food is fit for consumption. It then aids in chewing and swallowing of the bolus.

Term
Esophagus
Definition
The tube connecting the mouth to the stomach. In humans food takes 5 to 10 seconds to reach the stomach. In ruminants it is also used to regurgitate cud. It is topped by the pharynx which opens to the esophagus and the trachea to the lungs. The epiglottis closes over the trachea when swallowing to prevent choking. When acid from the stomach is spilled into the esophagus, it is called "heartburn".
Term
Stomach
Definition
A digestive compartment. For digestion and storage. This way much food can be taken in at once then slowly digested. Food takes 2 to 6 hours digesting in humans. In cows it is called the abomasum. In chickens the proventriculus. Has an elastic walls that can expand to 2L in humans. The stomach of carnivores may expand to a much larger size to accomodate for binges when an animal is caught. The stomach muscles mix the contents every 20 seconds. Gastric juice is excreted. It mixes food and gastric juices to make chyme. The epithelial cells are damaged by the harsh conditions and are constanly being replaced. When mucus fails to protect the cells as a result of bacterial infection, ulcers form. The chyme is metered into the small intestine at a rate it can handle.
Term
Saliva
Definition
A solution excreted into the mouth by salivary glands. The 5 salivary glands in animals are partoid, manibular, palatine, buccal, and sublingual. It contains amylase which begins chemical digestion by breaking down amylose (starch and glycogen). It lubricates food. It contains water, salts, cells, mucin, buffers, urea, antifrothing properties, and antimicrobial agents that protect the mouth against infections. In rumens it protects the rumen walls from the acids made in the rumen.
Term
Gastric Juice
Definition
Digestive juices released into the stomach. Contains hydrochloric acid and pepsinogen. The acid makes the pH very low, around 2. This kills all harmful bacteria and disrupts the extracellular matrix of foods, breaking cells apart, and denaturing proteins. It also activates the pepsinogen by breaking off a part, revealing its active cite. Pepsin may also activate other pepsinogens. Pepsin partially breaks up proteins.
Term
Gastric Gland
Definition
The inside of the stomach is lined with pits through which gastric glands release gastric juices. Mucuous cells secrete muucus that protects the lining of the stomach from being digested. Parietal cells release H+ and Cl- ions into the stomach using active transport. Chief cells secrete pepsinogen, which is then activated by the low HCl in the stomach.
Term
Small Intestine
Definition

The segment of the alimentary canal after the stomach. It is the longest segment; the name refers to its diameter. Food spends 5 to 6 hours passing through. The first 10 inches is the duodenum followed by jejunum and ileum. Here chyme mixes with juices from the gall bladder, liver, pancreas, and wall cells. The wall cells release disaccharidases (break disaccharides into monosaccharides), dipeptidases, carboxypeptidases, aminopepdidases (finnish protein breakdown into amino acids), and nucelotidases (finish nucleic acid breakdown into bases, sugars, and phosphates).

 Here food molecules are absorbed into the body. The inside of the small intestine is lined with vili to increase surfacea area of epithelial cells. Epithelial cells have microvili to increase absorption surface area. Together, one person has a surface area the size of a tennis court. Over this surface area, nutrients are transported by active, passive, or cotransport. They are then uploaded to the hepatic portal, bloodvessels leading directly to the liver. Fat and fat-soluble vitamins are loaded into the lacteals.

Term
Pancreas
Definition
A digestive accessory gland. Secretes an alkalene (neutralizes acid) solution of bicarbonate, amylase (digests polysaccharides) proteases (digest proteins), nucleases (digests nucleic acid), and lipase (digests fats) into the duodenum. The enzymes are only activated once they enter the duodenum.
Term
Liver
Definition

A digestive accessory gland. Prouces bile which is stored in the gallbladder.

Blood from the hepatic portal (from the small intestine) leads here. It is vey high in nutrients. The liver regulates the release of these nutrients to the rest of the body. It also removes any toxic substances or drugs that may have been consumed.

Term
Bile
Definition
A substance produced by the liver and stored in the gallbladder. Some animals lack gallbladders: bile is continuously excreted into the duodenum. Contains bile salts which emulsify lipids (turn large drops into tiny drops) to increase surface area for digestion. The liver uses bile as a way to get rid of pigment byproducts from red blood cell assembly. Disorder in this causes the pigment to build up in the skin, causing jaundice.
Term
Cotransport
Definition
When one molecule moving down its concentration gradient moves another molecule against its transportation gradient with specific proteins. Combined active and passive transport. Requires no ATP.
Term
Exocytosis
Definition
When a cell exports materials by fusing a vesicles membranes with the plasma mambrane, dumping the contents into the extracellular fluid.
Term
Endocytosis
Definition
When a cell imports material from the extracellular fluid by forming a vesicle out of the plasma membrane, capturing the import inside.
Term
Large Intestine
Definition

The section of the alimentary canal after the small intestine.  Includes the colon, cecum, and rectum.Its walls have no villi or microvilli. Very little nutrient absorption. The colon reabsorbed the water secreted into the alimentary canal. Around 7 liters are secreted, 90% of which is absorbed in the colon. Na+ ions are pumped into the colon, forcing water to diffuse back into the body. If the colon is infected or sick, less water may be diffused, causing diarrhea. If too much water is diffused, constipation. Many bacteria live in the colon, includin E. coli that digest fecal material and release offensive gases like methane, carbon dioxide, and hydrogen sulfide. Some produce vitamin K. One third to a half of the dry weight of feces is bacteria.

At the end of the large intestine is the rectum. There are two sphincters: one voluntary and one involuntary.

Term
Cecum
Definition
A dead-end juncture of the large intestine where fermentation occurs in herbivores. In humans it is very small and called the appendix. Proteins from bacteria are left undigested in monogastric animals since the large intestine cannot absorb proteins only amino acids.
Term
Dentition
Definition
Adaptations in an animals teeth. Teeth specialize depending on the diet of the animal. Carnviores have large, pointed incisors for killing/tearing flesh, and jagged molars for chewing. Herbivores have smaller incisors for tearing plants and large, flat molars for grinding the plant material. Omnivores have well-rounded dentition: both incisors and molars.
Term
Gastrointestinal Microbes
Definition
40 different species of ciliate protozoa, bacteri, and fungi. Species representation and concentration varies animal to animal. in a mutualistic relationship with herbivores (and termites). They may live in the crop, cecum, colon, or rumen. The herbivore houses and feeds the bacteria and the bacteria turn cellulose into digestible VFAs, make vitamin K and water-soluble vitamins, and provide protein as well as producing heat. Requre a warm, moist, dark, anaerobic environment with food suply and removal of wastes. In other words, the rumen.
Term
Rumino-Reticulum.
Definition
The first two stomachs of a ruminant: rumen and reticulum. Also called the paunch and honeycomb or hardware stomach. Roughly 20% of a ruminants body weight is rumen contents. Food passes freely between them. Used for fermentation and food storage. The ruminant periodically regurgitates cud for rechewing. Ruminants quickly fill the rumen then chew the cud in a safe place.  Bacteria and microbes turn cellulose from plant cell walls into VFAs which are absorbed through the rumen wall. The walls have papillae (finger-like projections) that increase the surface area of the rumen. The rumen contracts to mix the contents. The reticulum acts as a pacemaker. Small particles sink to the reticulum and pass to the omasum. Large particles are subject to remastication.
Term
Omasum
Definition
Also called the manyplies or Stockman's Bible. The third stomach of a ruminant after the rumen/reticulum. Water and VFAs are absorbed and the food is sorted for particle size. Only very small particles can pass through.
Term
Abomasum
Definition
The fourth and true stomach of a ruminant. Here the food is digested by the ruminant.'s enzymes.
Term
Gastrin
Definition
A hormone made in the stomach walls. Production is triggered by stretching the wall. It circulates back to the stomach, triggering the production of gastric juices.
Term
CCK
Definition
Cholecystokinin. A hormone released by the duodenum when chyme enters it. It triggers the gallbladder to release bile and the pancreas to release enzymes. It also acts on the stomach to slow the release of chyme into the duodenum.
Term
Secretin
Definition
A hormone relesed by the duodenum when chyme enters it. It signals the pancreas to release bicarbonate solution to raise the pH in the duodenum. It also acts on the stomach to slow release of chyme into the duodenum.
Term
Overnurishment
Definition
When an animal eats more calories than it expends first it is stored in liver and muscle cells as glycogen. When glycogen fills up, it is stored as fat in adipose tissue. As calories are used,  the adipose tissue is used up. Most healthy people have enough adipose tissue to last them several weeks without food. Too much adipose tissue is obestity. It can cause type 2 diabetes, cancer, and cardiovascular disease. 300,000 deaths per year in the US are linked to obesity.
Term
Insulin
Definition
A hormone secreted by the beta cells of the pancreas when glucose levels in the blood rise. It signals the liver to turn glucose into glycogen. Works in concert with glucagon. It also supresses the appetite. Type 1 diabetes is the inability to make insulin. Type 2 diabetes is when the liver doesn't take up glucose.
Term
Glucagon
Definition
A hormone released by the alpha cells of the pancreas when blood glucose levels are low. Signals the liver to break up glycogen. Works in concert with insulin.
Term
Ghrelin
Definition
A hormone released by the stomach when it is empty. Signals the brain to cause the feeling of hunger. It is suppressed by PPY.
Term
Leptin
Definition

A hormone released by adipose tissue that decreases the appetite. When body fat decreases, leptin levels fall, causing an increase in appetite. 

The ob gene in mice makes leptin and the db gene makes leptin receptors. If either of these are absent, obesity occurs.

Term
PPY
Definition
A hormone released by the small intestine when it is full that supresses the hormone ghrelin. This way you only feel hungry if there really is no food in your system.
Term
Simple Endocrine Pathway
Definition
A stimulus triggers a hormone to be released which acts directly on the target cells, triggering a response.
Term
Simple Neuroendocrine Pathway
Definition
A stimulus stimulates neurons which trigger the brain to release hormones that trigger responses in the target cells.
Term
Oxytocin
Definition

A hormone released by the posterior pituitary gland when the teats are stimulated. Causes the mammary glands to secrete milk. It also causes contractions in the uterus during childbirth.

Used to help with dystocia.

Term
Negative Feedback
Definition
When the response of a hormone pathway reduces the initial stimulus, for examle the secretin pathway (stimulus is low pH, response causes high pH). It will then reach homeostasis.
Term
Positive Feedback
Definition
When the response of a hormone pathway increases the stimulus. For example the oxytocin pathway. Teat stimulus causes milk release, which causes further teat stimulus until the baby is done nursing.
Term
Stress Response
Definition
Short term stress causes the hypothalamus to stimulate the adrenal medulla via nerves to secrete epinephrine and norephinephrine. Long terms stress causes the hypothalamus to stimulate the adrenal cortex via the hormone ACTH to release minerlocorticoids and glucocorticoids.
Term
Epinephrine and Norephinephrine
Definition
Hormones released by the adrenal medulla during short term stress. Causes glycogen breakup, glucose blood levels raise, blood pressure increases, breathing rate increases, metabolic rate increases, blood flow patterns change to increase alertness and decrease digestive, excretory, and reproductie system activity.
Term
Mineralocorticoids
Definition
A corticosteroid released by the adrenal cortex during long term stress. Includes aldosterone, which may also be produced in a negative feedback system stimulated by low lood pressure. Causes retention of sodium ions and water by the kidneys, and increased blood volume and pressure.
Term
Glucocorticoids
Definition
A corticosteroid released by the adrenal cortex during long term stress. Causes proteins and fats to be broken down and converted to glucose, raising blood glucose levels, and partial supresion of the immune system. Because of this, they are used to treat inflammatory diseases like arthritis, but long-term use has negative effects.
Term
Androgen
Definition

A "male" sex hormone. It is dominant in males, but present in females as well. Plays a role in female sex drive. The main one is testosterone. Without testosterone, all mammal fetuses develop into females. At puberty testosterone causes development of secondary male characteristics: hair growth, muscle mass. Use as a muscle enhancer also causes severe acne, liver, damage, and drop in sperm count and testicle size. 

Stimulates growth of penis, ducts, and glands, and development of secondary male characteristics and behaviour such as mounting, libido, and aggression.

Term
Progesterone
Definition

A "female" sex hormone. Produced by the corpus luteum and sometimes the placenta. Responsible in preparing and maintaining uterus tissues required to suppord growth of an embryo. Maintains pregnancy.

Can be administered to a cow with a vaginal implant. Prevents pregnancy, then when removed triggers ovulation.

Progesterone in the milk is indicative that a cow is pregnant.

Term
Sex Hormone
Definition
Androgens, estrogens, and progestins. Produced in small amounts in the adrenal cortex, but mostly in the testes or ovaries. Synthesis is triggered by gonadotropins (FSH and LH) made in the anterior pituitary gland. Secretion of gonadotropins is controled by GnRH (gonadotropin-releasing hormone). Sex hormones play a crucial role in sex differentiation in fetal development and in animal behaviour.
Term
DES
Definition
A synthetic estrogen prescribed between 1938 and 1971 to pregnant women. An endocrine disruptor. Causes reproductive organ abnormalities, vaginal and cervical cancer, and increased miscarriages in the daughters born from these pregnancies.
Term
Endocrine Disruptor
Definition
A chemical that disrupts the natural hormone balance in the body. DES is one. Other chemicals in the environment can act as endocrine disruptors, such as soybeans and certian plastics.
Term
Melatonin
Definition
A hormone produced in the pineal gland in the brain. It is a modified amino acid. It uses light levels to change the levels of pigment in the skin. It is secreted at night (more in the winter since nights are longer). It promotes sleep. It works in concert with suprachiasmatic nucleus (SCN) in the eyes.
Term
Reproductive Cycle
Definition
Cycles such as ovulation that are effected by day length, temperature, rainfall, and/or lunar cycles. They assure that offspring are developed and born into times of year that are optimal. Global warming is effecting these cycles. Some animals switch from asexual to sexual reproduction based on season.
Term
Hermaphroditism
Definition
When aimals have both male and female sexual reproductive structures and abilities. Common in species where finding a mate is difficult such as barnacles and earthworms. Any two individuals can successfully mate. Both individuals produce offspring after sexual intercourse. They may also self-fertilize.
Term
Parthenogenic Lizards
Definition
Lizards that have both male and female sexual behaviours based on hormone levels. They mount each other accordingly, but actually they reproduce by parthenogenisis and are truly sexless. They evolved from sexual lizards, leaving behind their sexual behaviours.
Term
Sex Reversal
Definition
Some fish and frogs have the ability to change sexes. In bluebead wrasse one female per school turns male when the male protector dies. He then protects and fertilizes the entire school. Oysters change from male to female when they reach a certain stage in development.
Term
Fertilization
Definition
When the sperm meets the egg. Can occur internally or externally.
Term
External Fertilization
Definition
When fertilization occurs outside of both parents. Only occurs in moist or underwater environments. This way the gametes don't dry out and the sperm can swim to the egg. Timing is cruicial for this. This may be controlled by temperature or day length. When all the members of the species release gametes suddenly at once it is called spawning. Sometimes two mates get together and privately excrete gametes. Much more gametes must be produced than in internal fertilization.
Term
Internal Fertilization
Definition
When fertilization occurs in the female reproductive tract. It is much more efficient than external fertilization, much less gametes are produced than in external fertilization, and does not require a moist environment. Gametes, embryos, and offspring are protected by parents. Requires cooperative befaviour in both parties and sophisticated reproductive organs. Mating animals use pheremones.
Term
Pheremone
Definition
A volatile or water-borne substance emited by mating animals in small amounts to alter the behaviour of other animals. Usually used to find a mate.
Term
Gamete
Definition
Sperm or egg. Produced from precursor cells that sit dormant in the animals gonads until puberty.
Term
Gonad
Definition
An organ that produces gametes. Some produce both sperm and eggs. Some release the gametes directly into the enironment. Some have elaborate tube systems to store, protect, and release gametes at appropriate times. Sperm develop in testes. Eggs develop in ovaries.
Term
Spermathecae
Definition
Storage sacks in the reproductive tracts of the females of some species. Sperm is stored here for long periods of time after copulation. This way mating does not need to occur regularly.
Term
Cloaca
Definition
A common orfice for feces and urine as well as reproduction. Present in birds.
Term
Uterus
Definition

Where embryos develop in mammals. The uterus is very thick-walled and elastic. Must expand to carry the fetus. The wall cells (endometrium) are packed with capillaries. The smooth muscle surrounding it is called the myometrium. The uterus opens into the vagina via the cervix. The oviducts connect to the uterus.

Types of uteri

Duplex: two uterine horns with distinct lumens. Two cervixes. Rodents.

Bipartite: Two uterine horns and a fused uterine body divided by a partial septum. Single cervix. Produces litters.

Bicornuate: Similar to bipartite but without a septum. Cows.

Simplex: No uterine horns, large uterin body. Women.

Term
Ovary (animal)
Definition
The female gonads flanking the uterus. The outer layer is packed with follicles each consisting of an oocyte.
Term
Follicle
Definition
In the ovary. Tissues that contain and nourish the oocyte, partially developed egg. The oocyte sits in the follicular lumen and is surrounded by zone pelludica. There is an inner granulosa cell layer surrounded by a theca cell layer. At birth female humans have around 1 to 2 million follicles. Initially they are granulosa cells surounding many, many ova. They grow into primary follicles with theca cells. FSH stimulates it to grow to a preovulatory follicle which protrudes from the ovary. It then releases estradiol. After ovulation it becomes the corpus lutem.
Term
Corpus Luteum
Definition
"Yellow body". A structure in the ovary formed after the follicle releases an egg. It releases estradiol and progesterone. If fertilization of the egg does not occur, the corpus luteum degenerates and the cycle continues. During pregnancy it produces progesterone and relaxin.
Term
Oviducts (mammals)
Definition
Also called the Falopian tubes. Infundibulum cilia encase the ovary. When an egg is released into the abdominal cavity they gently sweep the egg into the tube and deliver it to the uterus. The cavity in the tube may be as thin as a human hair.
Term
Vulva
Definition
Collective term for female outer genitalia surrounding the opening of the vagina. Labia, clitoris, glans, and prepuce. During sexual stimulation all engorge with blood and the vestibular glands release lubricating fluid.
Term
Mammary Gland
Definition

Glands present in both sexes but only active in females. Number of glands and location varies species to species. Epithelial cells screte milk which drains into tree-like ducts opening to the teat. The leaves are alveoli.

At parturition estradiol, prolactin, glucocorticoids, and oxytocin trigger the mammary glands to release colostrum and then milk.

Some milk is stored in the cistern between milkings. It recieves milk from the gland at milk let-down. Very small volume.

Term
Testes
Definition
The male gonads encased in the scrotum. They develop inside the body and drop into the scrotum just prior to birth. This is essentil to sperm production. Some mammals withdraw them when it is not mating season. In some animals they remain internal for the entire lifespan. Scrotum regulates temperature by holding the testes close or far from the body in order to optimize temperature for sperm production. Sperm is produced in seminiferous tubules. Leydig cells produce testosterone and other androgens. Sperm then pass into the epididymis where they complete maturation.
Term
Sperm (animal)
Definition

The male gamete. Much smaller than the egg. A head with an acrosome containing enzymes for entering the egg. The flagellum is surrounded by mitochondira that power it forward. They are produced in the testes and mature in the epididymis. They become motile, but cannot fertilize an egg until they are exposed to fluids from the seminal vesicles (only after ejaculation). The vas deferens take sperm from the epididymis and deliver them to the urethra during ejaculation. Sperm development is continuous for the male's entire life.

Mammal sperm are only able to fertilize up to 30 hours after ejaculation. Bird sperm can last up to 2 weeks.

Term
Semen
Definition
Ejaculatory fluid. Contains sperm but by volume it is 60% seminal vesicle, prostate, (ampulla), and bulbourethral gland products. Alkalene. Contains fructose for the sperm to eat, a coagulating enzyme, vitamin C, and postaglandins which cause the contraction of the female reproductive tract. Prostate cancer is the most common cancer. Bulborurethral glands clear the urethra of any urine prior to ejaculation. It may bring sperm with it as it goes, which is why the pull-out method of contraception is poorly advised. In some species semen forms a gel once ejaculated, and meters sperm into the cervix gradually.
Term
Penis
Definition
The male reproductive organ. Most animals keep it inside a protective sheath. Corpus cavernosum is spoungy tissue surrounding the urethra. Upon sexual arousal it engorges with blood. Many mammals also have a baculum, a bone in the penis. As it swells drainage of this blood is blocked, causing an erection, allowing insertion into the vagina. The tip of the penis has thinner skin and is more sensitive. Erectile disfunction may be treated with nitric oxide (Viagara), which relaxes the smooth muscles in the penis, causing an erection. In circumsision, the prepuce (foreskin) is removed.
Term
Egg (animal)
Definition
Developed from an oocyte in the follicle. Must be larger than sperm since it contains food for the very early embryonic delopment. All meiosis occurs before birth, but the eggs don't mature until they are needed.
Term
Spermatogenesis
Definition
The production of sperm. Occurs continually throughout adolescence and adulthood of the male. Inside the seminiferous tubes cells turn into spermatogonia which turn into spermatocytes by mitosis. Spermatocytes undergo meisos to form 4 diploid spermatids. The spermatids undergo extensive changes in cell shape to become sperm.
Term
Oogenesis
Definition
Production of egg cells. Begins in the female embryo. Oogonia are produced and then divide by mitosis to produce cells that partially undergo meiosis. These partially divided cells are calld primary oocytes which are stored in the follicle. After puberty FSH hormone triggers them to mature at a rate of one each month. It undergoes partialy meiosis again but will only complete if it is fertilized by a sperm. The polar bodies created degenerate.
Term
Monogastric
Definition

An animal with one stomach. Carnivores, omnivores, and hind-gut fermenters. They do not chew cud. Fermentation is of less quality since much of the nutrients have already been absorbed in the small intestine. They cannot absorb protein from bacteria in their cecum since the large instestine can only absorb amino acids not proteins. To make up for this some animals practice cecotrophy.

 

Term
Ruminant
Definition

An animal with a rumen. Cows, goats, deer, the majority of farm animals. Fore-gut fermenters. May also have a cecum. They use cellulose as a source of energy. The rumen is filled rapidly then the animal sits down and chews its cud. This greatly reduces the particle size of food and increases surface area. Higher silage in the diet means more rumination. 

Advantages: Can eat thinks like hay and corncobs. Disadvantages: Cannot absorb dietary vitamin, fat, or protein supplements. Very low weight gain to feed ratio. Prone to digestive problems.

Term
Prehension
Definition
The means by which an animal brings food to its mouth.
Term
Mastication
Definition
Chewing. Vertial and lateral action of the jaw to crush food. Ruminants remasticate their food after initial swallowing by regurgitating it.
Term
Salivary Glands
Definition

Where saliva is produced. The 3 main salivary glands are:

Parotid (below the ear)

Mandibular (at the base of the toungue)

Sublingual (under the toungue)

Term
Rennin
Definition
An enzyme that hydrolizes injested milk proteins. Secreted into the stomach.
Term
Cecotrophy
Definition
The consumption of soft (not pelleted) feces that has been fermented in the cecum. Practiced by some monogastric herbivores. This way protein from the cecal bacteria may be supplemented to the diet. Rabbits not allowed to practice this may suffer from malnutrition.
Term
Feces
Definition
Undigested material expelled in elimination. Cointains undigested food, digestive enzymes, sloughed cells from intestinal/stomach walls, and bacteria. Poorly digestible foods will produce more feces.
Term
Micturation
Definition
Urination. Mammal urine contains nurea. Bird urine contains uric acid, which requires less water for the body to excrete. There are also minerals and water. The kidney keeps the body hydrated and removes wastes through urine.
Term
Digestion in Pigs
Definition
Pigs are omnivorous monogastrics. Saliva has a pH of 7.4. The pig is the only farm animal with amylase in its saliva, however it is of little use since it is very weak and cannot work in the stomach's acidity. The stomach has a capacity of 2 gallons. Pigs do not excrete rennin. The stomach takes up to 24 hours to digest. The small intestine is around 60 feet long with a capacity of 2.5 gallons. The large intesting is 16 feet long with a capacity of 2.5 gallons. The cecum is 9.5 inches in length with a capacity of 0.5 gallons.
Term
Digestion in Cattle
Definition
Cattle are herbivore ruminants. Prehension with toungue, bottom teeth, and dental pad. The capacity of the rumino-reticulum and omasum come to about 50 gallons, most of which is in the rumen.
Term
Forestomach
Definition
The rumen, reticulum, and omasum. Do not produce any digestive fluids, but house microbes. After the forestomachs the alimentary canal of ruminants is the same as monogastrics.
Term
Reticular Groove
Definition
A structure present in young ruminants that pushes milk away from the rumen and straight into the omasum. If a calf drinks to quickly or if the groove is deformed, milk will enter the rumen and rot. This causes diarrhea which removes much of the animal's fermenting bacteria and the production of toxins in the rumen.
Term
VFA
Definition

Volatile Fatty Acid. Produced from cell walls by microbes in the forestomachs. Absorbed by the rumen and omasum walls. Provide up to 70% of the animals energy needs.

Acetate, propionate, butyrte, isobutyrate, valerate, and isovalerate.

Term
Eructation
Definition
Belching. Important for ruminants. Ruminal bacteria produce gases which must exit through the mouth.
Term
Digestion in Birds
Definition
Unlike other animals, birds do not have any teeth and very limited saliva excretion. No digestion occurs in the mouth. The stomach is called the proventriculus. There is a grinding organ called the gizzard to make up for lack of mastication at the mouth. Chemical digestion also occurs here. The same enzymes as in mammals are secreted in the small intestine except for a complete lack of lactase. Some water absorption and microbial fermentation occurs in the ceca, which is larger in herbivorous birds. After the long intestine waste is eliminated through the cloaca.
Term
Crop (digestive organ)
Definition
A dilation of the esophagus in birds. Acts as a storage compartment and to moisten food. Pigeons produce "crop milk" here which is regurgitated to feed young. In some species fermentation occurs in the crop.
Term
Proventriculus
Definition
The stomach of birds. pH of 4. Time spent in the proventriculus is very small. Little digestion occurs except in carnivorous birds.
Term
Gizzard
Definition
Also called the ventriculus. A grinding digestive organ in birds to make up for the lack of mastication at the mouth. Wild birds have grit in their gizzards to grind food. Domestic birds may not since food is pre-ground. Enzymes from the proventriculus come into action.
Term
Digestion in Horses
Definition
Horses are monogastric. Require higher quality feed than ruminants. Fermentation occurs in the cecum. Prehension with their teeth and upper lips. Horses have both lateral and vertical jaw motion. Can only chew on one side at a time since the upper jaw is wider than the lower jaw. The saliva contains no enzymes, however copious amounts are secreted. Horse stomachs are surprisingly small and have less muscular contractions. Horses are prone to stomach problems, called colic. Horses do not have gallbladders. Bile is excreted continually. Small inestine is 25 feet long, 60% of total gut capacity. Very large cecum where water absorption occurs and contains VFA and vitamin making bacteria. Only 66% as effective at fibre digestion than cattle because of a poor rapid passage. Protein from bacteria cannot be digested. Horses on poor diets may practice coprophagy.
Term
Male Characteristics
Definition

XY or XXY chromosomes in mammals. ZZ chromosomes in birds.

Large amounts of gametes produced. Large amounts of androgens produced, particularily testosterone. Penis and acessory organs (exception is birds). Mounting. Aggression. Crowing in roosters. Libido.

Secondary characteristics: comb, wattle, spurs, snood, pheremones, antlers.

Term
Female Characteristics
Definition

XX or X0 chromosomes in mammals. WZ chromosomes in birds.

Production of eggs. Larger amounts of estrogen, particularily estradiol. Female reproductive tract. Sexual behaviours. Maternal behaviours. Libido. Willingness to mate. Lack of male secondary characteristics.

Term
Ampulla
Definition
A male accessory organ that makes semen additives. Important in stallions, but abesnt in boars.
Term
Castration
Definition
The removal of the testes lowers testosterone in the body, getting rid of such behaviours as mounting, libido, aggression, and spraying.
Term
Cervix
Definition
Separates the vagina from the uterus. Normally constricted to prevent infections. During estrous it relaxes to allow in sperm. During pregnancy it is tightly sealed. Before parturition the connective tissues break.
Term
Male Bird Reproductive Organs
Definition
Birds lack penises and accessory glands. The testes are inside the body. Sperm is expelled through the cloaca. Spermatozoa are stored by the female in glands in the vaginal wall.
Term
Female Bird Reproductive Organs
Definition

Both oviducts and ovaries develop, but the right-hand one regresses, leaving just one. Their ovaries lack corpus luteums since birds do not have pregnancies. Follicles may reach up to a centimeter in diameter. The gamete eggs are fertilized and diploid egg developed in different segments of the oviduct. The egg is expelled through the cloaca.

In hens this cycle repeats every day. Ovulation occurs 45 minutes after an egg is laid, to allow spermatazoa to swim to and fertilize gamete eggs.

Term
Oviduct (birds)
Definition

The female reproductive tract in birds. Has 5 regions (starting from ovary):

1. Infundibulum: Engulfs ovulated ovum. Fertilization occurs here. 15 to 30 minutes.

2. Magnum: Adds concentrated egg white proteins and membranes to the zygote. 2 to 3 hours.

3. Isthmus: Adds fluids to the egg white. 1 to 2 hours.

4. Uterus: Adds a calcium carbonate shell to the egg from Ca+ and HCO3- ions from the blood. 20 to 26 hours.

5. Vagina: Expells egg out of the cloaca with muscular contractions. The site for insemination and spermatazoa storage.

Term
Molting
Definition
The regression then full development of the oviduct in birds. After molting hens are much more productive. Molting is triggered by day length and diet.
Term
Primordial Germ Cells
Definition
The precursor cells to gonads in the fetus. Develop into either oogonia or spermatogonia.
Term
Sry Gene
Definition
A gene located on the short arm of the Y chromosome that is essential to the development of male characteristics. Causes the bipotential gonads in fetuses to develop into testes.
Term
Mullerian and Wolffian Ducts
Definition
Both develop in embryos but when sex is determined the Mullerian duct develops into female parts and the Wolffian duct develops into male parts and the other one degenerates.
Term
GnRH
Definition

Gonadotropin-Releasing Hormone or LH releasing hormone. Release is triggered by estradiol. Stimulates the release of LH and FSH.

Can be used in concert with prostglandin to stimulate ovulation in animals.

Term
GnIH
Definition

Gonadotropin Inhibitory Hormone.

Inhibits teh release of LH and FSFI.

Term
LH
Definition

Leteinizing Hormone.

Produced in the anterior pituitary gland. Stimulates the testes to make androgen. Stimulates the ovaries to ovulate and produce the corpus luteum.

Term
FSH
Definition

Follicle-Stimulating Hormone.

Produced in the anterior pituitary gland. Stimulates sperm production or follicle development.

Used in animals to cuse large number of follicles for superovulation.

Term
Prostglandin
Definition

A hormone that either causes contractions of the uterus or a bird to lay an egg. Causes disintigration of the corpus luteum. Cause miscarriages. 

Used to time animal estrous cycles, cause parturition, and induce abortions or terminate pseudopregnancies.

Term

Estrous Cycle

 

Definition

A cycle set by receptive behaviours and symptoms: swelling of vulva, discharge from the vulva, release of pheremones, standing being mounted, seeking out males. Some animals will mate at any time in the estrous cycle (humans). Some will only release LH after coitus, preventing the need for an estrous cycle. There are polyestrous cycles and monoestrous cycles

Two stages: 

Follicular Phase: Proestrous. The follicle develops, releasing estradiol, causing "heat" behaviours. Estradiol and LH levels increase and progesterone decreases.

Luteal Phase: Metestrus and Diestrus. The corpus luteum forms and is maintained, releasing progesterone. Estradiol and LH levels low. 

 Separated by ovulation, when LH and estradiol levels spike and progesterone drops. The egg is released.

Term
Zona Pellucida
Definition
A membrane layer surrounding the egg that prevent it from being fertilized by sperm from another species. Once fertilizes, the proteins change preventing against polyspermy.
Term
Polyestrous
Definition

Having more than one estrous cycle a year. Cows are polyestrous.

Seasonally polyestrous is when multiple estrous cycles occur but only at a certain time of year, usually spring. Mares are seasonally polyestrous.

Term
Monoestrous
Definition
Having only one estrous cycle a year. Bitches are monoestrous.
Term
Artificial Insemination
Definition

The placing of semen into the reproductive tract of domestic animals by humans.

Benefits are better paternity, ability for one male to inseminate many more females, no risk of injury to female or people working with animals, no risk of venereal disease (as long as semen is tested). Semen must be collected and stored at 4C or frozen by liquid nitrogen.

Sperm may be sorted to achieve gender biases in children.

Term
Zygote (animal)
Definition
When the sperm ferilizes the the first thing that happens is cell division within the zona pellucida until it "hatches", becoming a blastocyst. Then cell differentiation occurs: endoderm, mesoderm, and ectoderm. The zona pellucida is shed and the blastocyst attaches to the endometrium.
Term
Fetal Membranes
Definition
Membranes form around the early fetus: the chorion and amnion (ectoderm + mesoderm), and the allantois and yolk sac (endoderm + mesoderm). Between membranes are fluid-filled theamniotic and amniotic cavities that protect the embryo from physical shock.
Term
Placenta
Definition

The place of contact between mother and fetus. Nutrients, gases, and wastes are exchanged. Produces progesterone in some animls, and estradiol whic prepares the uterus for parturition. Placentas are categorized by:

Chorioviteline: formed from choiron and yolk sac. Pigs, horses.

Chorioallantoic: formed from the chorion and allontois. Cattle, sheep, dogs, cats.

Diffuse, cotyledonary, zonary, discoid placentas (shape).

Number of maternal/embryo layers.

Term
Placentome
Definition
A serios of binucleate embryonic cells and a caruncle from the endometrius. They release hormones that signal placental formation. The removal of even one placentome causes reduced fetal growth. There are from 60 to 80 of them.
Term
Pregnancy Hormones
Definition

Progesterone: Produced by placenta or corpus luteum. Maintains pregnancy.

Placental Lactogen: Produced by placenta. Triggers mammary gland development.

Relaxin: Produced by the corpus luteum. Prepres cervix for parturition.

Estradiol: Produced by the placenta. Prepares uterus for parturition.

Term
Relaxin
Definition

A pregnancy hormone. It relaxes the uterine walls, disallowing contractions, and it relaxes the birth canal and the cervix at parturition.

Detection of relaxin in bitches is a signal she is pregnant.

Term
Parturition
Definition

Giving birth. The myopial muscles arrane the child head-first. The uterus contracts and cervix dilates. The child is passed through the birth canal and then followed by the placenta and fetal membranes.

Progesterone levels drop, estradiol levels increase. A lot of oxytocin is produced.

Term
Reproductive Problems
Definition

Anatomic, genetic, nutritional, environmental, toxicological, or disease.

Dystocia: Difficult parturition due to large fetus or twins, or a small/young mother. Increases chance of stillbirth.

Brucellosis: A bacterial infection that can be venereal. Causes abortion or delayed fetal development.

Leptospirosis: A bacterial infection. Causes fever, kidney problems, and abortion.

Cryptorchidism: A genetic problem found often in companion animals.

Freemartinism: Occurs when twins are opposite genders. The female twin is infertile with small ovaries due to mixing of brother's genes during fetal development.

Term
Melengestrol Acetate
Definition
A progesterone-like hormone. Fed to beef heifers to prevent the estrous cycle and to increase growth rate.
Term
Persisitency
Definition
The ability of an animal to have a prolonged peak in milk production. Depends on genetics, nutrition, disease, milking frequency, and time of conception.
Term
Dairy Cow Breeds
Definition

Holstein: Produces maximum amount of milk.

Jersey + Guernsey: Less milk, but higher milk solid content. Milk appears yellowish due to coloured vitamin A. Other cows have colourless.

Ayrshire + Brown Swiss: Intermediate milk yield and solid content.

Limousin + Simmental: A beef cow also bred for milking.

Goats: Goat's milk feeds more people in the world than cow's. Milk composition is similar.

Ewe: Milk is mostly used to make cheese and yogurt. Richer in fat and protein. Produce more when suckling twins.

Term
Sow Lactation
Definition

Sow's milk is higher in protein and fat than cow's. Piglets born earlier get first pick of the teats and recieve superior nutrition.

Sows have two rows of teats, idealing 14 total. Each teat is served by two canals and cisterns. Front teats are the better and wider spaced than rear teats.

Term
Mare Lactation
Definition

Mare's milk is lower in protein and fat than cow's, but higher in lactose. Heavier draft breeds produce more milk than pleasure breeds.

Mares have 2 teats each served by two streak canals and cisterns. The udder is broader and flatter than a cow's.

Term
Cow Lactation
Definition

Some heifers have extra teats located behind anterior teats. These are commonly removed to avoid mastitis. Udders vary greatly in size and shape. The two sides of the udder are separated by the meial suspensory ligament, and the front and back glands separated by lateral suspensory ligaments. They give support to the udder. Rear quarters are usually a little larger.

Insufficient vitamins and minerals in the diet will cause calcium from the cow's bones to go into the milk, causing health problems for the cow. Certain feeds can give the milk distinct flavours and odors.

Term
Alveolus
Definition
Were milk is made in the mammary gland. Spherical lumen surrounded by epithelial cells that excrete tiny amounts of milk into the lumen. Lumen is connected to the ductal system. Alveoli are surrounded by many capillaries and myoepithelial cells. Oxytocin triggers the myoepithelial cells to contract the alveoli. If the cow is stressed this does not occur. As milk pressure in the lumen builds, less milk is formed, which is why frequent milking increases milk yield.
Term
Milk
Definition
Produced in the epithelial cells of an alveoli. Contains: water, vitamins, minerals (pass directly from blood to lumen), casein, lactose, and milk fat (produced in the epithelial cells).
Term
Casein
Definition
The main protein found in milk. They are formed in the epithelial cells from amino acids from the blood or from amino acids synthesized in the cells. Protein percentage is negatively correlated with milk volume.
Term
Milk Fat
Definition
Formed in the epithelial cells. As milk pressure builds up, less fat is released. When milk pressure drops (from milking) it is released, causing milk from the latter part of milking to be higher in fat. Fat percentage is negatively correlated with milk volume. Type of milk fat can be altered by altering the cow's diet.
Term
Colostrum
Definition
Early milk high in vitamins to get the newborn off to a good start. High in gamma globulin which boosts the baby's immune system.
Term
Mastitis
Definition

An infection of the teat. Causes inflammation of mammary gland. Flecks in the milk. Milk is high in leucocytes, dead epithelial cells, and somatic cells. Milk may form a gel.

Prevented by sanitizing all milking equipment repeatedly.

Term
(Cet)artiodactyla
Definition
Also called ruminants. Even toed ungulates with foregut fermentation. Whales were recently added. 60% efficient at breaking down cellulose. Fermentation baceria may be used for protein. Plants may be detoxified before digestion. Water requirements low, digestion is slow. Better on low quality (high fibre) feeds, can survive arid climates.
Term
Perissodactyla
Definition
Odd-toed ungulates with hind-gut fermentation. Monogastrics. Digestive system is similar to a omnivore or carnivore. Only difference is a large cecum, where fermentation occurs. Protein from bacteria is unavailable. Cannot detox plants before digestion. 45% efficient at digesting cellulose. Water requirements are high and digestion is fast. Do better on high quality (low fibre) feeds. Do poorly in arid climates.
Term
Propanoic Acid
Definition
A volatile fatty acid produced by fermentation microbes in ruminants. It is converted to glucose in the liver. Very important to milk production.
Term
Acetic Acid
Definition
A volatile fatty acid produced by fermentation microbes in ruminants.
Term
Butyric Acid
Definition
A volatile fatty acid produced by fermentation microbes in ruminants.
Term
Plant Defenses Agains Predators
Definition
Thorns, poisons, cilica barbs, mutual association with fire ants. Poison may be unpleasant or lethal. Some poisons are animal-specific. Clover causes liver damage to horses.
Term
Photosensitization
Definition
Occurs in herbivores. Photons are absorbed by chlorophyll that has been digested. Without operating photosystems, the free radicals wreak havoc on the animal. Hair loss and rashes on skin around face, back, and teat. Liver is impaired.
Term
Endophyte
Definition

A fungus that lives in symbiotic relationship with plants. It provides the plant with protection from herbivores (poisonous), and disease and drought tolerance. The plant gives it a home and food. It lives in the above-ground apoplast spaces. It transfers to offspring by infecting seeds.

Causes major health problems in animals that eat the plant. Poor reproduction and productivity. Sheep get the staggers and fall over. Placed in trenches to keep them upright (so that rumen contents don't enter the lungs). May take up to 4 weeks to recover.

Term
Push-Pull Systems
Definition
A growing system that incorporates a push that pushes away predators, and a pull, that pulls predators away from crops. Example: stemborers (moths) and striga (parasitic plants) are very bad pests in Africa. Napier grass is planted to attract the borers. The grass is not as negatively affected by the larvae than corn is, and kills the larvae. Desmodium is planted between corn crops. This chokes out striga and deters away stemborers. Napier grass can be harvested and used as animal feed.
Term
Aphids
Definition
Parasites on many crops. Feed on the phloem and spread viruses. They release pheremones when they are being attacked to warn other aphids to run away. The pheremone ironically attracts predators. GMO wheat with this pheremone exists, but is still under extensive research.
Term
Cyanide
Definition

A common poison found in plants. Cassava, many fruit seeds. There are several types of cyanides.

Cyanide compound precursors are stored in a vacuole and the enzymes that make it poisonous are in the cytosol. They are only combined if the cell is damaged.

In animals cyanide blocks a stage in the electron transport chain, potentially fatal. Some plants and fungi are immune to cyanide. The electron transport step is bypassed, however there is less ATP yield.

Term
Mouldy Sweet Clover
Definition
A mould in sweet clover that causes delayed blood clotting and even death in animals. Farmers were having this problem in animals after dehornings, castrations, or even just ear notch operations. Dr. Frank Schofield was the one who discovered this was caused by mouldy clovers in feed. The mould contains an anti vitamin-A. University of Wisonsin marketed a solution to this problem: low coumarin varieties of clover. Gave them enough money to build the WARF building.
Term
Phytoestrogens
Definition
Estrogen-like compounds found in legumes. Very high-quality forage that is self-seeding. Causes abortion, birthing problems, and lactation in pre-pubescent ewes or even wethers!
Term
Mammary Gland Development
Definition

Development is triggered by progesterone, STH, insulin, and glucocorticoids. 

Mammogenesis: Starts wih a mammary cell streak. Duct cells form, but not mammary cells. At puberty sex hormones trigger ductal tissue growth to speed up. Pregnancy hormones cause seretory tissues to form.

Lactogenesis: Initiation of milk production.

Galactogenesis: Maintenance of mammary glands.

Amount of secretory tissue roughly follows a lactation curve.

Supporting users have an ad free experience!